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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 927 fasta sequence
[CGCCGCCGCCCGCCGCGCCGCCTTCTCTCGCCTCTAGGGTTCCGCCGTTTTCCGCGGCGCGCCACCGCCGCCGCGGCGCCGCCCGTCACCGCAGGAGCCGGCAATGAAGCGTCCACCGCCACGCGAAGACGGCGCTGGAAGCGGAGGAGGAGACGGGGCCAAGAAAGGGAAGGGGAGGTGGGGCGGCGGAGGGAGGAGGCGGAACGAGCAGCGGCTGGGGAGCGGCGGCGGCGGCGCCCTGTCCCTCGCCGCCTTCGCCTACGCCAAGTCCAGGAACACCGGCTACAACCCGGCCCTCATCAAGAAGCAGAAAGAGTTCTACAAGAATGCTAAATTGATTAGCAAGTACAAGAGGTCAAAGAAGCAACAAAATCAGTCAAGCAATCCTCCACCATTTCCAATTCCAAAGGAAGGAGGTGATGATGCAAACAATGCATCAAAGCTGCATAGCAAGAAGAAGAAGCGCGTTGCACCAAGCTTAA-ACGAAGAGTATGAGAAAAAACGGGCAGAGGATGAGAAGGCA-AAGAAGGAGCGGGAAGCGATAATTCAGGCAAAGAGGGAGGAGCGGGAGAGGTCTGAAGCAAGGCGGAGAGATTTAAGGGAGAAGATGTTCAAGAAAACAAGATCTGGGCA-GCCTGTGATGAAATACAGGATCCAGCATCTGTTGGAGACTGCATTAGAAAGCTCAAACAAGTAAATGTTGCTACAAAAATGCTGTACTGATTGCTATAAGCAAATTTTGTAGATCAATGCAGTGACCTGTTTGTTTCAACTGGCTTCTGTAACTCTAGCACTCTACCATGTAAATCTTTGGTGATTTTCATTTCCATGCTGATGGTGCACGCACTTTTGGTTTCTCTCTCATACGATGCAAGATGATTGGATAATAAAGAAA-CAGAGATGA-CTGGATTGCCCAGTGAAAAAAAA]
[+] EMBL AK109170 [CGCCGCCGCCCGCCGCGCCGCCTTCTCTCGCCTCTAGGGTTCCGCCGTTTTCCGCGGCGCGCCACCGCCGCCGCGGCGCCGCCCGTCACCGCAGGAGCCGGCAATGAAGCGTCCACCGCCACGCGAAGACGGCGCTGGAAGCGGAGGAGGAGACGGGGCCAAGAAAGGGAAGGGGAGGTGGGGCGGCGGAGGGAGGAGGCGGAACGAGCAGCGGCTGGGGAGCGGCGGCGGCGGCGCCCTGTCCCTCGCCGCCTTCGCCTACGCCAAGTCCAGGAACACCGGCTACAACCCGGCCCTCATCAAGAAGCAGAAAGAGTTCTACAAGAATGCTAAATTGATTAGCAAGTACAAGAGGTCAAAGAAGCAACAAAATCAGTCAAGCAATCCTCCACCATTTCCAATTCCAAAGGAAGGAGGTGATGATGCAAACAATGCATCAAAGCTGCATAGCAAGAAGAAGAAGCGCGTTGCACCAAGCTTAA ACGAAGAGTATGAGAAAAAACGGGCAGAGGATGAGAAGGCA AAGAAGGAGCGGGAAGCGATAATTCAGGCAAAGAGGGAGGAGCGGGAGAGGTCTGAAGCAAGGCGGAGAGATTTAAGGGAGAAGATGTTCAAGAAAACAAGATCTGGGCA GCCTGTGATGAAATACAGGATCCAGCATCTGTTGGAGACTGCATTAGAAAGCTCAAACAAGTAAATGTTGCTACAAAAATGCTGTACTGATTGCTATAAGCAAATTTTGTAGATCAATGCAGTGACCTGTTTGTTTCAACTGGCTTCTGTAACTCTAGCACTCTACCATGTAAATCTTTGGTGATTTTCATTTCCATGCTGATGGTGCACGCACTTTTGGTTTCTCTCTCATACGATGCAAGATGATTGGATAATAAAGAAA CAGAGATGA CTGG ]
[+] EMBL BI800948 [ tGTTGCCCCAAGCTTAATACGAAGAGTATGAGAAAAAAC GTCAGAGGATGAGAA GCACAAGAAGGA CGGGAAGCGATAATTCA GCCAAGAGGGAGGATCGGGAGAGGTCTGAAGCAAGGCGGAGAGATTTAAGGGAGAAGATGTTCAAGAAAAC AGATCT GGCACGCCTGTGATGAAATACAGGATCCAGCATCTGTTGGAGACTGCATTAGAAAGCTCAAACAAGTAAATGTTGCTACCAAAATGCTGTACTGATTGCTATAA CCAATTTTGTAGATC AT CAGTGACCTGTTTGTTTCAACTGGCTTCTGTAACTCTAGCACTCTACCATGTAAATCTTTGGTGATTTTCATTTCCATGCTGATGGTGCACGCACTTTTGGTTTCTCTCTCATACGATGCAAGATGATTGGATAATAAGGAAACCAGAGATGACCTGGATTGCCCAGTGAAAAAAAA]
consensusID : consensus_6573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence
[GAGGAGGAGACGGGGCCAAGAAAGGGAAGGGGAGGTGGGGCGGCGGAGGGAGGAGGCGGAACGAGCAGCGGCTGGGGAGNGGCGGCGGCGGCGCCCTGTCCCTCGCCGCCTTCGCTTACGCCAAGTCCAGGAACACCGGCTACAACCCGGCCCTCATCAAGAAGCAGAAAGAGTTCTACAAGAATGCTAAATTGATTAGCAAGTACAAGAGGTCAAAGAAGCAACAAAATCAGTCAAGCAATCCTCCACCATTTCCAATTCCAAAGGAAGGAGGTGATGATGCAAACAATGCATCAAAGCTGCATAGCAAGAAGAAGAAGCGCGTTGCACCAAGCTTAAACGAAGAGTATGAGAAAAAACGGGCAGAGGATGAGAAGGCAAAGAAGGAGCGGGAAGCGATAATTCAGGCAAAGAGGGAGGAGCGGGAGAGGTCTGAAGCAAGGCGGAGAGATTTAAGGGAGAAGATGTTCAAGAAAACAAGATCTGGGCAGCCTGTGATGAAATACAGGATCCAGCATCTGTTGGAGACTGCATTAGAAAGCTCAAACAAGTAAATGTTGCTACAAAAATGCTGTACTGATTGCTATAAGCAAATTTTGTAGATCAATGCAGTGCCCTGTTTGTTTCAACTGGCTTCTGTAACTCTAGCACTCTACCATGTAAATCTTTGGTGATTTGCATTTCCATGCTGATGGTGCACGCAAAAAAAAATAAAAAGA]
[-] EMBL CB681485 [GAGGAGGAGACGGGGCCAAGAAAGGGAAGGGGAGGTGGGGCGGCGGAGGGAGGAGGCGGAACGAGCAGCGGCTGGGGAGNGGCGGCGGCGGCGCCCTGTCCCTCGCCGCCTTCGCTTACGCCAAGTCCAGGAACACCGGCTACAACCCGGCCCTCATCAAGAAGCAGAAAGAGTTCTACAAGAATGCTAAATTGATTAGCAAGTACAAGAGGTCAAAGAAGCAACAAAATCAGTCAAGCAATCCTCCACCATTTCCAATTCCAAAGGAAGGAGGTGATGATGCAAACAATGCATCAAAGCTGCATAGCAAGAAGAAGAAGCGCGTTGCACCAAGCTTAAACGAAGAGTATGAGAAAAAACGGGCAGAGGATGAGAAGGCAAAGAAGGAGCGGGAAGCGATAATTCAGGCAAAGAGGGAGGAGCGGGAGAGGTCTGAAGCAAGGCGGAGAGATTTAAGGGAGAAGATGTTCAAGAAAACAAGATCTGGGCAGCCTGTGATGAAATACAGGATCCAGCATCTGTTGGAGACTGCATTAGAAAGCTCAAACAAGTAAATGTTGCTACAAAAATGCTGTACTGATTGCTATAAGCAAATTTTGTAGATCAATGCAGTGCCCTGTTTGTTTCAACTGGCTTCTGTAACTCTAGCACTCTACCATGTAAATCTTTGGTGATTTGCATTTCCATGCTGATGGTGCACGCAAAAAAAAATAAAAAGA]
consensusID : consensus_6573#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[GTCCCTCGCCGCATTCGCTTACGCCAAGTCCAGGAACCCCGGATACAACCCGGCCCTCATCAAGAAGCAGAAAGAGTTCTACAAGAATGCTAAATTGATTAGCAAGTACAAGAGGTCAAAGAAGCAACAAAATCAGTCAAGCAATCCTCCCCCATTTCCAATTCCAAAGGAAGGAGGTGATGATGCAAACAATGCATCAAAGCTGCATAGCAAGAAGAAGAAGCGCGTCGCCCCAAGCTTAATCGAAGAGTATGCGAAAAAACGGGCAGAGGATGAGAAGGCAAAGAAGGAGCGGGAAGCGATAATTCAGGCAAAGAGGGAGGAGCGGGAGAGGTCTGAACCAAGCGGCACCGCCGCCGCTCCCCAGCCGCTGCTCGTTCCGCCTCCTCCCTCCGCCGCCCCACCTCCCCTTCCCTTTCTTGGCCCCGTCTCCTCCTCCGCTTCCAGCGCCGTCTTCGCGTGGCGGTGGACGCTTCATTGCCGGCTCCTGCGGTGACGGGCGGCGCCGCGGCGGCGGTGGCGCGCCGCGGAAAACGGCGGAACCCTAGAGGCGAGAGAAGGCGGCGCGGCGGGCGGCGGCGCTGGA]
[-] EMBL CB681484 [GTCCCTCGCCGCATTCGCTTACGCCAAGTCCAGGAACCCCGGATACAACCCGGCCCTCATCAAGAAGCAGAAAGAGTTCTACAAGAATGCTAAATTGATTAGCAAGTACAAGAGGTCAAAGAAGCAACAAAATCAGTCAAGCAATCCTCCCCCATTTCCAATTCCAAAGGAAGGAGGTGATGATGCAAACAATGCATCAAAGCTGCATAGCAAGAAGAAGAAGCGCGTCGCCCCAAGCTTAATCGAAGAGTATGCGAAAAAACGGGCAGAGGATGAGAAGGCAAAGAAGGAGCGGGAAGCGATAATTCAGGCAAAGAGGGAGGAGCGGGAGAGGTCTGAACCAAGCGGCACCGCCGCCGCTCCCCAGCCGCTGCTCGTTCCGCCTCCTCCCTCCGCCGCCCCACCTCCCCTTCCCTTTCTTGGCCCCGTCTCCTCCTCCGCTTCCAGCGCCGTCTTCGCGTGGCGGTGGACGCTTCATTGCCGGCTCCTGCGGTGACGGGCGGCGCCGCGGCGGCGGTGGCGCGCCGCGGAAAACGGCGGAACCCTAGAGGCGAGAGAAGGCGGCGCGGCGGGCGGCGGCGCTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6573#0 CGCCGCCGCCCGCCGCGCCGCCTTCTCTCGCCTCTAGGGTTCCGCCGTTTTCCGCGGCGC 60
consensus_6573#1 ------------------------------------------------------------
consensus_6573#2 ------------------------------------------------------------
consensus_6573#0 GCCACCGCCGCCGCGGCGCCGCCCGTCACCGCAGGAGCCGGCAATGAAGCGTCCACCGCC 120
consensus_6573#1 ------------------------------------------------------------
consensus_6573#2 ------------------------------------------------------------
consensus_6573#0 ACGCGAAGACGGCGCTGGAAGCGGAGGAGGAGACGGGGCCAAGAAAGGGAAGGGGAGGTG 180
consensus_6573#1 -----------------------GAGGAGGAGACGGGGCCAAGAAAGGGAAGGGGAGGTG 37
consensus_6573#2 ------------------------------------------------------------
consensus_6573#0 GGGCGGCGGAGGGAGGAGGCGGAACGAGCAGCGGCTGGGGAGCGGCGGCGGCGGCGCCCT 240
consensus_6573#1 GGGCGGCGGAGGGAGGAGGCGGAACGAGCAGCGGCTGGGGAGNGGCGGCGGCGGCGCCCT 97
consensus_6573#2 ------------------------------------------------------------
consensus_6573#0 GTCCCTCGCCGCCTTCGCCTACGCCAAGTCCAGGAACACCGGCTACAACCCGGCCCTCAT 300
consensus_6573#1 GTCCCTCGCCGCCTTCGCTTACGCCAAGTCCAGGAACACCGGCTACAACCCGGCCCTCAT 157
consensus_6573#2 GTCCCTCGCCGCATTCGCTTACGCCAAGTCCAGGAACCCCGGATACAACCCGGCCCTCAT 60
************ ***** ****************** **** *****************
consensus_6573#0 CAAGAAGCAGAAAGAGTTCTACAAGAATGCTAAATTGATTAGCAAGTACAAGAGGTCAAA 360
consensus_6573#1 CAAGAAGCAGAAAGAGTTCTACAAGAATGCTAAATTGATTAGCAAGTACAAGAGGTCAAA 217
consensus_6573#2 CAAGAAGCAGAAAGAGTTCTACAAGAATGCTAAATTGATTAGCAAGTACAAGAGGTCAAA 120
************************************************************
consensus_6573#0 GAAGCAACAAAATCAGTCAAGCAATCCTCCACCATTTCCAATTCCAAAGGAAGGAGGTGA 420
consensus_6573#1 GAAGCAACAAAATCAGTCAAGCAATCCTCCACCATTTCCAATTCCAAAGGAAGGAGGTGA 277
consensus_6573#2 GAAGCAACAAAATCAGTCAAGCAATCCTCCCCCATTTCCAATTCCAAAGGAAGGAGGTGA 180
****************************** *****************************
consensus_6573#0 TGATGCAAACAATGCATCAAAGCTGCATAGCAAGAAGAAGAAGCGCGTTGCACCAAGCTT 480
consensus_6573#1 TGATGCAAACAATGCATCAAAGCTGCATAGCAAGAAGAAGAAGCGCGTTGCACCAAGCTT 337
consensus_6573#2 TGATGCAAACAATGCATCAAAGCTGCATAGCAAGAAGAAGAAGCGCGTCGCCCCAAGCTT 240
************************************************ ** ********
consensus_6573#0 AAACGAAGAGTATGAGAAAAAACGGGCAGAGGATGAGAAGGCAAAGAAGGAGCGGGAAGC 540
consensus_6573#1 AAACGAAGAGTATGAGAAAAAACGGGCAGAGGATGAGAAGGCAAAGAAGGAGCGGGAAGC 397
consensus_6573#2 AATCGAAGAGTATGCGAAAAAACGGGCAGAGGATGAGAAGGCAAAGAAGGAGCGGGAAGC 300
** *********** *********************************************
consensus_6573#0 GATAATTCAGGCAAAGAGGGAGGAGCGGGAGAGGTCTGAAGCAAGGCGGAGAGATTTAAG 600
consensus_6573#1 GATAATTCAGGCAAAGAGGGAGGAGCGGGAGAGGTCTGAAGCAAGGCGGAGAGATTTAAG 457
consensus_6573#2 GATAATTCAGGCAAAGAGGGAGGAGCGGGAGAGGTCTGAACCAAG-CGG-------CACC 352
**************************************** **** *** *
consensus_6573#0 GGAGAAGATGTTCAAGAAAACAAGATCTGGGCAGCCTGTGATGAAATACAGGATCCAGCA 660
consensus_6573#1 GGAGAAGATGTTCAAGAAAACAAGATCTGGGCAGCCTGTGATGAAATACAGGATCCAGCA 517
consensus_6573#2 GCCGCCGCTCCCCAGCCGCTGCTCGTTCCGCCTCCTCCCTCCGCCGCCCCACCTCCCCTT 412
* * * * ** * * * * * * ***
consensus_6573#0 TCTGTTGGAGACTGCATTAGAAAGCTCAAACAAGTAAATGTTGCTACAAAAATGCTGTAC 720
consensus_6573#1 TCTGTTGGAGACTGCATTAGAAAGCTCAAACAAGTAAATGTTGCTACAAAAATGCTGTAC 577
consensus_6573#2 CCCTTTCTTGGCCCCGTCTCCTCCTCCGCTTCCAGCGCCGTCTTCGCGTGG-CGGTGGAC 471
* ** * * * * * ** * * ** **
consensus_6573#0 TGATTGCTATAAGCAAATTTTGTAGATCAATGCAGTGACCTGTTTGTTTCAACTGGCTTC 780
consensus_6573#1 TGATTGCTATAAGCAAATTTTGTAGATCAATGCAGTGCCCTGTTTGTTTCAACTGGCTTC 637
consensus_6573#2 GCTTCATTGCCGGC---TCCTGCGGTGACGGGCGGCGCCGCGGCGGCGGTGGCGCGCCGC 528
* * ** * ** * ** * * * * * * ** *
consensus_6573#0 TGTAA-CTCTAGCACTCTACCA-TGTAAATCTTTGGTGATTTTCATTTCCATGCTGATGG 838
consensus_6573#1 TGTAA-CTCTAGCACTCTACCA-TGTAAATCTTTGGTGATTTGCATTTCCATGCTGATGG 695
consensus_6573#2 GGAAAACGGCGGAACCCTAGAGGCGAGAGAAGGCGGCGCGGCGGGCGGCGGCGCTGGA-- 586
* ** * * ** *** * * ** * * ****
consensus_6573#0 TGCACGCACTTTTGGTTTCTCTCTCATACGATGCAAGATGATTGGATAATAAAGAAACAG 898
consensus_6573#1 TGCACGCA-----------------AAAAAAAATAAAAAGA------------------- 719
consensus_6573#2 ------------------------------------------------------------
consensus_6573#0 AGATGACTGGATTGCCCAGTGAAAAAAAA 927
consensus_6573#1 -----------------------------
consensus_6573#2 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||