cluster # 6574

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Oryza sativa
cluster # 6574 cluster # 6574 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6574#0 length = 559 sequences # 1
consensus_6574#1 length = 417 sequences # 1

consensus_6574#2 length = 279 sequences # 1
consensus_6574#3 length = 164 sequences # 1

consensusID : consensus_6574#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [ACCCTCGTGTCTCTCCCTACAGATGGCGACGGCTGGTGGGAGAATCGAGTTCGGCGTTGGAACGCGGGTGATCGACGACGAGCGAGCCANGCGGCACAGAATAATGAGTCGTCACGCTGGCGCCTGGCACCCACCCGGATGGGACCGGCTGGAGTCTCGGACTCAGCACGGATGCGGTTTCCTTCGGCGAGCGTTNTCCCCCTCCCCCGTCGTCGTCGTTCGGCTTTCTTGCTATGGATTTGGATGCGGCGAGTTCCTGTTCTCTGACAAAAAGGTCATGTGTGTGTCTCTGATGGGCTCTCGGAGCCAAAGAAGGTAGTGCGCGAACCGGTGAAGTCAGCAGGCCCCACCCCCGTCTCTCCTCCACGCATGTATTTTTCCAAGGTGGATAAAGATTGCCACACGTCACCTCACCGTATTGTGAATGGCCATAGGGATAACTGCAGTTACAGGTGGACCGCTTATCCCTCCGCTCGTTTCCTTTTCTCCGTTGTATAGATGTAAAGAGAATTTATTTTCCAGTGATTTGCCATGGGTACTTGATGTCCCAAAAAAAAAA]

[+] EMBL BQ906714             [ACCCTCGTGTCTCTCCCTACAGATGGCGACGGCTGGTGGGAGAATCGAGTTCGGCGTTGGAACGCGGGTGATCGACGACGAGCGAGCCANGCGGCACAGAATAATGAGTCGTCACGCTGGCGCCTGGCACCCACCCGGATGGGACCGGCTGGAGTCTCGGACTCAGCACGGATGCGGTTTCCTTCGGCGAGCGTTNTCCCCCTCCCCCGTCGTCGTCGTTCGGCTTTCTTGCTATGGATTTGGATGCGGCGAGTTCCTGTTCTCTGACAAAAAGGTCATGTGTGTGTCTCTGATGGGCTCTCGGAGCCAAAGAAGGTAGTGCGCGAACCGGTGAAGTCAGCAGGCCCCACCCCCGTCTCTCCTCCACGCATGTATTTTTCCAAGGTGGATAAAGATTGCCACACGTCACCTCACCGTATTGTGAATGGCCATAGGGATAACTGCAGTTACAGGTGGACCGCTTATCCCTCCGCTCGTTTCCTTTTCTCCGTTGTATAGATGTAAAGAGAATTTATTTTCCAGTGATTTGCCATGGGTACTTGATGTCCCAAAAAAAAAA]




>consensus_6574#0
ACCCTCGTGTCTCTCCCTACAGATGGCGACGGCTGGTGGGAGAATCGAGTTCGGCGTTGG
AACGCGGGTGATCGACGACGAGCGAGCCANGCGGCACAGAATAATGAGTCGTCACGCTGG
CGCCTGGCACCCACCCGGATGGGACCGGCTGGAGTCTCGGACTCAGCACGGATGCGGTTT
CCTTCGGCGAGCGTTNTCCCCCTCCCCCGTCGTCGTCGTTCGGCTTTCTTGCTATGGATT
TGGATGCGGCGAGTTCCTGTTCTCTGACAAAAAGGTCATGTGTGTGTCTCTGATGGGCTC
TCGGAGCCAAAGAAGGTAGTGCGCGAACCGGTGAAGTCAGCAGGCCCCACCCCCGTCTCT
CCTCCACGCATGTATTTTTCCAAGGTGGATAAAGATTGCCACACGTCACCTCACCGTATT
GTGAATGGCCATAGGGATAACTGCAGTTACAGGTGGACCGCTTATCCCTCCGCTCGTTTC
CTTTTCTCCGTTGTATAGATGTAAAGAGAATTTATTTTCCAGTGATTTGCCATGGGTACT
TGATGTCCCAAAAAAAAAA

consensusID : consensus_6574#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence

                              [TGGAGCTCGGACTCAGCACCGGATGCGGTTTCTTCGGCGAGCTTTCCCCCTCCCCCTCTCTCTTCGGCTTTCTTGCTATGGATTTGGATGCGGCGATTCCTTTCTCTGACAAAAAGTCATTTTTCTCTGATGGGCTCTCTCGGAGCCACAAGAAGTATGCGCGAACCCGGTGAAGTCACCACGGCCCCATCGCCCCGTCTCTCCTCCACCGCCACTGTATTTTTCCAAGGTGGATAAAGATTGCCACACGTCACCTCACCGTATTGTGAATGGCCATAGGGATAACTGCAGTTACAGGTGGACCGCTTATCCCTCCGCTCGTTTCCTTTTCTCCGTTGTATAGATGTAAAGAGAATTTATTTTCCAGTGATTTGCCATGGGTATTGATGTCCNAAGAATGGTCAAACACATGCAAAA]

[+] EMBL BQ908457             [TGGAGCTCGGACTCAGCACCGGATGCGGTTTCTTCGGCGAGCTTTCCCCCTCCCCCTCTCTCTTCGGCTTTCTTGCTATGGATTTGGATGCGGCGATTCCTTTCTCTGACAAAAAGTCATTTTTCTCTGATGGGCTCTCTCGGAGCCACAAGAAGTATGCGCGAACCCGGTGAAGTCACCACGGCCCCATCGCCCCGTCTCTCCTCCACCGCCACTGTATTTTTCCAAGGTGGATAAAGATTGCCACACGTCACCTCACCGTATTGTGAATGGCCATAGGGATAACTGCAGTTACAGGTGGACCGCTTATCCCTCCGCTCGTTTCCTTTTCTCCGTTGTATAGATGTAAAGAGAATTTATTTTCCAGTGATTTGCCATGGGTATTGATGTCCNAAGAATGGTCAAACACATGCAAAA]




>consensus_6574#1
TGGAGCTCGGACTCAGCACCGGATGCGGTTTCTTCGGCGAGCTTTCCCCCTCCCCCTCTC
TCTTCGGCTTTCTTGCTATGGATTTGGATGCGGCGATTCCTTTCTCTGACAAAAAGTCAT
TTTTCTCTGATGGGCTCTCTCGGAGCCACAAGAAGTATGCGCGAACCCGGTGAAGTCACC
ACGGCCCCATCGCCCCGTCTCTCCTCCACCGCCACTGTATTTTTCCAAGGTGGATAAAGA
TTGCCACACGTCACCTCACCGTATTGTGAATGGCCATAGGGATAACTGCAGTTACAGGTG
GACCGCTTATCCCTCCGCTCGTTTCCTTTTCTCCGTTGTATAGATGTAAAGAGAATTTAT
TTTCCAGTGATTTGCCATGGGTATTGATGTCCNAAGAATGGTCAAACACATGCAAAA

consensusID : consensus_6574#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 279
fasta sequence

                              [CTCGGAGCCCACACATGACACGCTATGCGCGAACCGGCTGAAGTCAACAGNCCCCACCCCCGTCTCTCTCTCCACGCATGTATTTTTCCAGAGGTGGATAAAGATTGCCACACGTCACCTCACCGGTATGTGTGAATGGCCCATAGGTGATAACTGCAGTTTACAGGTGGACCCGACTTTATCCCTCCGCATCGCTTTCCATTTTNTCCGTTGTATAGATGTAAAGAGAATTTATTTTCCAGTGATTTGCCATGGGTATTGANGTCCACAAAAAAAAAA]

[+] EMBL BQ906636             [CTCGGAGCCCACACATGACACGCTATGCGCGAACCGGCTGAAGTCAACAGNCCCCACCCCCGTCTCTCTCTCCACGCATGTATTTTTCCAGAGGTGGATAAAGATTGCCACACGTCACCTCACCGGTATGTGTGAATGGCCCATAGGTGATAACTGCAGTTTACAGGTGGACCCGACTTTATCCCTCCGCATCGCTTTCCATTTTNTCCGTTGTATAGATGTAAAGAGAATTTATTTTCCAGTGATTTGCCATGGGTATTGANGTCCACAAAAAAAAAA]




>consensus_6574#2
CTCGGAGCCCACACATGACACGCTATGCGCGAACCGGCTGAAGTCAACAGNCCCCACCCC
CGTCTCTCTCTCCACGCATGTATTTTTCCAGAGGTGGATAAAGATTGCCACACGTCACCT
CACCGGTATGTGTGAATGGCCCATAGGTGATAACTGCAGTTTACAGGTGGACCCGACTTT
ATCCCTCCGCATCGCTTTCCATTTTNTCCGTTGTATAGATGTAAAGAGAATTTATTTTCC
AGTGATTTGCCATGGGTATTGANGTCCACAAAAAAAAAA

consensusID : consensus_6574#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 164
fasta sequence

                              [ATAGTAAGTATGCGTCGAACCCGCGTGAAGTCATCAGGCCCCACCCCCGTCTCTCCTCCACGCATGTAGTTTTTCCAAGGTGGATAAAGATTGCACACATCGTCACCTCACCGTATTGATGAATGGCCATAGGGATAACTGCAGTTACCAGGTGGACCGCTTAT]

[-] EMBL BU667051             [ATAGTAAGTATGCGTCGAACCCGCGTGAAGTCATCAGGCCCCACCCCCGTCTCTCCTCCACGCATGTAGTTTTTCCAAGGTGGATAAAGATTGCACACATCGTCACCTCACCGTATTGATGAATGGCCATAGGGATAACTGCAGTTACCAGGTGGACCGCTTAT]




>consensus_6574#3
ATAGTAAGTATGCGTCGAACCCGCGTGAAGTCATCAGGCCCCACCCCCGTCTCTCCTCCA
CGCATGTAGTTTTTCCAAGGTGGATAAAGATTGCACACATCGTCACCTCACCGTATTGAT
GAATGGCCATAGGGATAACTGCAGTTACCAGGTGGACCGCTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6574#1      ------------------------------------------------------------
consensus_6574#3      ------------------------------------------------------------
consensus_6574#0      ACCCTCGTGTCTCTCCCTACAGATGGCGACGGCTGGTGGGAGAATCGAGTTCGGCGTTGG 60
consensus_6574#2      ------------------------------------------------------------
                                                                                  

consensus_6574#1      ------------------------------------------------------------
consensus_6574#3      ------------------------------------------------------------
consensus_6574#0      AACGCGGGTGATCGACGACGAGCGAGCCANGCGGCACAGAATAATGAGTCGTCACGCTGG 120
consensus_6574#2      ------------------------------------------------------------
                                                                                  

consensus_6574#1      ------------------------------TGGAGCTCGGACTCAGCACCGGATGCGGTT 30
consensus_6574#3      ------------------------------------------------------------
consensus_6574#0      CGCCTGGCACCCACCCGGATGGGACCGGCTGGAGTCTCGGACTCAGCACGGATGCGGTTT 180
consensus_6574#2      ------------------------------------------------------------
                                                                                  

consensus_6574#1      TCTTCGGCGAGCTTTCCCCCTCCCCC------TCTCTCTTCGGCTTTCTTGCTATGGATT 84
consensus_6574#3      ------------------------------------------------------------
consensus_6574#0      CCTTCGGCGAGCGTTNTCCCCCTCCCCCGTCGTCGTCGTTCGGCTTTCTTGCTATGGATT 240
consensus_6574#2      ------------------------------------------------------------
                                                                                  

consensus_6574#1      TGGATGCGGCGATTCCTT--TCTCTGACAAAAAGTC---ATTTTTCTCTGATGGGCTCTC 139
consensus_6574#3      ------------------------------------------------------------
consensus_6574#0      TGGATGCGGCGAGTTCCTGTTCTCTGACAAAAAGGTCATGTGTGTGTCTCTGATGGGCTC 300
consensus_6574#2      ------------------------------------------------------CTCGGA 6
                                                                                  

consensus_6574#1      TCGGAGCCACAAGAAGTA-TGCG-CGAACCCG-GTGAAGTCACCACGGCCCCATCGCCCC 196
consensus_6574#3      --------ATAGTAAGTA-TGCGTCGAACCCGCGTGAAGTCATCA-GGCCCCACC--CCC 48
consensus_6574#0      TCGGAGCCAAAGAAGGTAGTGCG-CGAACCGG--TGAAGTCAGCA-GGCCCCACC--CCC 354
consensus_6574#2      GCCCACACATGACACGCTATGCG-CGAACCGG-CTGAAGTCAACA-GNCCCCACC--CCC 61
                              *    * *   **** ****** *  ******** ** * ***** *  ***

consensus_6574#1      GTCTCTC-CTCCACCGCCACTGTATTTTTCCAAGGTGGATAAAGATTGC-CACA-CGTCA 253
consensus_6574#3      GTCTCTC-CTCCACG--CATGTAGTTTTTCCAAGGTGGATAAAGATTGCACACATCGTCA 105
consensus_6574#0      GTCTCTC-CTCCACG--CATGT-ATTTTTCCAAGGTGGATAAAGATTGC-CACA-CGTCA 408
consensus_6574#2      GTCTCTCTCTCCACG--CATGTATTTTTCCAGAGGTGGATAAAGATTGC-CACA-CGTCA 117
                      ******* ******   **     **** *  ***************** **** *****

consensus_6574#1      CCTCACCG-TATTG-TGAATGGCC-ATAGG-GATAACTGCAGTTAC-AGGTGGACCG--- 305
consensus_6574#3      CCTCACCG-TATTGATGAATGGCC-ATAGG-GATAACTGCAGTTACCAGGTGGACCG--- 159
consensus_6574#0      CCTCACCG-TATTG-TGAATGGCC-ATAGG-GATAACTGCAGTTAC-AGGTGGACCG--- 460
consensus_6574#2      CCTCACCGGTATGTGTGAATGGCCCATAGGTGATAACTGCAGTTTACAGGTGGACCCGAC 177
                      ******** ***   ********* ***** *************   *********    

consensus_6574#1      CTTATCCCTCCGCT---CGTTTCCTTTTCTCCGTTGTATAGATGTAAAGAGAATTTATTT 362
consensus_6574#3      CTTAT------------------------------------------------------- 164
consensus_6574#0      CTTATCCCTCCGCT---CGTTTCCTTTTCTCCGTTGTATAGATGTAAAGAGAATTTATTT 517
consensus_6574#2      TTTATCCCTCCGCATCGCTTTCCATTTTNTCCGTTGTATAGATGTAAAGAGAATTTATTT 237
                       ****                                                       

consensus_6574#1      TCCAGTGATTTGCCATGGGTA-TTGATGTCCNAAGAATGGTCAAACACATGCAAAA 417
consensus_6574#3      --------------------------------------------------------
consensus_6574#0      TCCAGTGATTTGCCATGGGTACTTGATGTCCCAAAAAAAAAA-------------- 559
consensus_6574#2      TCCAGTGATTTGCCATGGGTA-TTGANGTCCACAAAAAAAAAA------------- 279