cluster # 6576

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Oryza sativa
cluster # 6576 cluster # 6576 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6576#0 length = 611 sequences # 2

consensus_6576#1 length = 583 sequences # 2

consensusID : consensus_6576#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 611
fasta sequence

                              [CAGCGAACGAGAACTCCCGTCTTCAGACGCAACCGCGAAAATATCCGGCCGACTCGCCGGAGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGGAGATTCCGACGACCCAGCAATCGTGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCGCTCCTCGTCCCCGCCGGTCGCGCCACCTCCGCTGCTGCTCCGGCGGCGGGGACCCGGGCCAGCCCCCGCAGGAGGCCGTGCTCGAGGCCATCTCCAAGGTAGCCAGGTCTAAAGGAAGGGTTGCACTCACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCTTATG]

[+] EMBL AK070265             [CAGCGAACGAGAACTCCCGTCTTCAGACGCAACCGCGAAAATATCCGGCCGACTCGCCGGAGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGGAGATTCCGACGACCCAGCAATCGTGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCGCTCCTCGTCCCCGCCGGTCGCGCCACCTCCGCTGCTGCTCCGGCGGCGGGGACCCGGGCCAGCCCCCGCAGGAGGCCGTGCTCGAGGCCATCTCCAAGGTAGCCAGGTCTAAAGGAAGGGTTGCACTCACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCTTATG]
[+] EMBL CA767312             [                                                                                                                                                                                                                                                                                          CTCACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCTTATG]




>consensus_6576#0
CAGCGAACGAGAACTCCCGTCTTCAGACGCAACCGCGAAAATATCCGGCCGACTCGCCGG
AGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGGAGATTCCGACGACCCAGCAATCG
TGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCGCTCCTCGTCCCCGCCGGTCGCGC
CACCTCCGCTGCTGCTCCGGCGGCGGGGACCCGGGCCAGCCCCCGCAGGAGGCCGTGCTC
GAGGCCATCTCCAAGGTAGCCAGGTCTAAAGGAAGGGTTGCACTCACAACAAACATGGTC
CTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGGTA
AATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTC
CAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTG
TCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTA
GTTTCCAGCGAGCAGGTCCAAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAG
TATTTCTTATG

consensusID : consensus_6576#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 583
fasta sequence

                              [GAAAATTCCGGCCGACTCGCCGGAGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGGAGATTCCGACGACCCAGCAATCGTGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCGCTCCTCGTCCCCGACCACCCCCGCGCCGCCGGTCGCGCCACCTCCGCTGCTGCTCCGGCGGCGGGGACCCGGGCCAGCCCCCGCAGGAGGCCGTGCTCGAGGCCATCTCCAAGGTAGCCAGGTCTAAAGGAAGGGTTGCACTCACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATNTCTTATGA]

[+] EMBL CB636489             [GAAAATTCCGGCCGACTCGCCGGAGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGGAGATTCCGACGACCCAGCAATCGTGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCGCTCCTCGTCCCCGACCACCCCCGCGCCGCCGGTCGCGCCACCTCCGCTGCTGCTCCGGCGGCGGGGACCCGGGCCAGCCCCCGCAGGAGGCCGTGCTCGAGGCCATCTCCAAGGTAGCCAGGTCTAAAGGAAGGGTTGCACTCACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATNTCTTATG ]
[-] EMBL CB636490             [                                                                                                                                                                                                                                                                                                                       GAATGGCTTGTTTTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTGTTTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGCCGTGTATCGTGCCATGAGAAGTGATAATAGGATGAAGTATTTCTTATGA]




>consensus_6576#1
GAAAATTCCGGCCGACTCGCCGGAGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGG
AGATTCCGACGACCCAGCAATCGTGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCG
CTCCTCGTCCCCGACCACCCCCGCGCCGCCGGTCGCGCCACCTCCGCTGCTGCTCCGGCG
GCGGGGACCCGGGCCAGCCCCCGCAGGAGGCCGTGCTCGAGGCCATCTCCAAGGTAGCCA
GGTCTAAAGGAAGGGTTGCACTCACAACAAACATGGTCCTTGGTGGCACTGTGACAGATG
ATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGGTAAATTCATACCCCACAAATAGAG
GATTTACAGCAATTGGTACTGGAGGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTG
AATCTGTTCTTCAAGAACCCATTCCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGG
GGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAGCCGTGTA
TCGTGCCATGAGAAGTGATAATAGGATGAAGTATNTCTTATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6576#0      CAGCGAACGAGAACTCCCGTCTTCAGACGCAACCGCGAAAATATCCGGCCGACTCGCCGG 60
consensus_6576#1      ------------------------------------GAAAAT-TCCGGCCGACTCGCCGG 23
                                                          ****** *****************

consensus_6576#0      AGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGGAGATTCCGACGACCCAGCAATCG 120
consensus_6576#1      AGAGGAGGAGAGAGAAGGCATCGCCGGCCGCCGGCGGAGATTCCGACGACCCAGCAATCG 83
                      ************************************************************

consensus_6576#0      TGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCGCTCCTCGTCCCCG---------- 170
consensus_6576#1      TGCGATGGCGTGCTGCCGGGCCCTCGCGCTCCGCTCGCTCCTCGTCCCCGACCACCCCCG 143
                      **************************************************          

consensus_6576#0      -----CCGGTCGCGCCACCTCCGCTGCTGCTCCGGCGGCGGGGACCCGGGCCAGCCCCCG 225
consensus_6576#1      CGCCGCCGGTCGCGCCACCTCCGCTGCTGCTCCGGCGGCGGGGACCCGGGCCAGCCCCCG 203
                           *******************************************************

consensus_6576#0      CAGGAGGCCGTGCTCGAGGCCATCTCCAAGGTAGCCAGGTCTAAAGGAAGGGTTGCACTC 285
consensus_6576#1      CAGGAGGCCGTGCTCGAGGCCATCTCCAAGGTAGCCAGGTCTAAAGGAAGGGTTGCACTC 263
                      ************************************************************

consensus_6576#0      ACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTT 345
consensus_6576#1      ACAACAAACATGGTCCTTGGTGGCACTGTGACAGATGATGCAAGTGATGAATGGCTTGTT 323
                      ************************************************************

consensus_6576#0      CTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGA 405
consensus_6576#1      CTGGATCAGAAGGTAAATTCATACCCCACAAATAGAGGATTTACAGCAATTGGTACTGGA 383
                      ************************************************************

consensus_6576#0      GGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATT 465
consensus_6576#1      GGTGATGATTTTGTCCAGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATT 443
                      ************************************************************

consensus_6576#0      CCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATT 525
consensus_6576#1      CCCAAGGGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATT 503
                      ************************************************************

consensus_6576#0      GGACCAATTCGTGTAGTTTCCAGCGAGCAGGTCCAAGCCGTGTATCGTGCCATGAGAAGT 585
consensus_6576#1      GGACCAATTCGTGTAGTTTCCAGCGAGCAG-------CCGTGTATCGTGCCATGAGAAGT 556
                      ******************************       ***********************

consensus_6576#0      GATAATAGGATGAAGTATTTCTTATG- 611
consensus_6576#1      GATAATAGGATGAAGTATNTCTTATGA 583
                      ****************** *******