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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6577#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 811 fasta sequence
[TGCCCGTCGCACCCGATTGCCATCCCTACAAGCGAGGTAACGCAAGAATCCCCCATCACCAAAACCCAGAGACTTCTCTCCTCTTGCTCCTCCTCGACGCCATGGCCCCCAGATCGGACAGCGCCACCGGCGGCGCGGCCGCCGCCCAGGCCCACGGATCCGACTTCGACTCCATAGATCCCCTCTTCC-ACGTCCTCCGCGTGCTCCCCTTCTCCTTCCT-CCGGCCGCC-GCGCACCCGCCTGAGGCTGCCCTCCAACCTGGCGCTCCCCTCCCCCATGACCGTCTTCGCCCTCATCCTCCTCACCTACTTCGCCGTCGTCTCCGGCCTCGTCTACGACGTCATCGTCGAGCCCCCCGGCATCGGCAGCGTCCAGGACCCCGCCACCGGCGCCGTCCGCCCCGTCGTCTTCCTCCCCGGCCGCGTCAACGGCCAGTACATCATCGAGGGGCTCTCCTCCGGCATCATGTTCGTCATCGGCGGCATCGGGATCATCCTCCTCGACCTCGCCGTCGACCGCAACAGGCCCCGGAGCCTTCGCGTCTCCTTCGGTGGCTCCGGCGTCGCCGCCATCGTCATCGCGTACGCTATGGCCATGCTCTTCCTCCGCATCAAGATCCCGGGCTACCTATGGTGAGGAACAAGCTTCTTTACTTTGATCGTTAGATCAGATCTGTAACAAGATTCTCTACCTCTAGATCTGTTTGCTGTTGCTGAGGAACTATTGCGCTTCCTAATGATGTTATTGTAAAATTCTGGATGATTTTGAGTTTAAATTAGTTATCTGAAGATTATCGTTTTGAAATAGAAAAA]
[+] EMBL AK071564 [TGCCCGTCGCACCCGATTGCCATCCCTACAAGCGAGGTAACGCAAGAATCCCCCATCACCAAAACCCAGAGACTTCTCTCCTCTTGCTCCTCCTCGACGCCATGGCCCCCAGATCGGACAGCGCCACCGGCGGCGCGGCCGCCGCCCAGGCCCACGGATCCGACTTCGACTCCATAGATCCCCTCTTCC ACGTCCTCCGCGTGCTCCCCTTCTCCTTCCT CCGGCCGCC GCGCACCCGCCTGAGGCTGCCCTCCAACCTGGCGCTCCCCTCCCCCATGACCGTCTTCGCCCTCATCCTCCTCACCTACTTCGCCGTCGTCTCCGGCCTCGTCTACGACGTCATCGTCGAGCCCCCCGGCATCGGCAGCGTCCAGGACCCCGCCACCGGCGCCGTCCGCCCCGTCGTCTTCCTCCCCGGCCGCGTCAACGGCCAGTACATCATCGAGGGGCTCTCCTCCGGCATCATGTTCGTCATCGGCGGCATCGGGATCATCCTCCTCGACCTCGCCGTCGACCGCAACAGGCCCCGGAGCCTTCGCGTCTCCTTCGGTGGCTCCGGCGTCGCCGCCATCGTCATCGCGTACGCTATGGCCATGCTCTTCCTCCGCATCAAGATCCCGGGCTACCTATGGTGAGGAACAAGCTTCTTTACTTTGATCGTTAGATCAGATCTGTAACAAGATTCTCTACCTCTAGATCTGTTTGCTGTTGCTGAGGAACTATTGCGCTTCCTAATGATGTTATTGTAAAATTCTGGATGATTTTGAGTTTAAATT ]
[+] EMBL AU101273 [ CTTNGACTCCATAGATCCCCTTTTCCAAGGTCCTCCGCGTGCTCCCCTTCTCCTTCCTNCGGGCCGCCGGCGCACCCGCCTGAGGCTGCCCTCCAACCTGGCGCTCCCCTCCCCCATGACCGTCTTCGCCCTCATCCTCCTCACCTACTTCGCCGTCGTCTCCGGCCTCGTCTACGACGTCATCGTCGAGCCCCCCGGCATCGGCAGCGTCCAGGACCCCGCCACCGGCGCCGTCCGCCCCGTCGTCTTCCTCCCCGGCCGCGTCAACGGCCAGTACATCATCGAGGGGCTCTCCTCCGGCATCATGTTCGTCATCGGCGGCATCGGGATCATCCTCCTCGACCTCGCCGTCGACCGCAACAGGCCCCGGAGCCTTCGCGTCTCCTTCGGTGGCTCCGGCGTCGCCGCCATCGTCATCGCGTACGCTATGGCCATGCTCTTCCTCCGCATCAAGATCCCGGGCTACCTATGGTGAGGAACAAGCTTCTTTACTTTGATCGTTAGATCAGATCTGTAACAAGATTCTCTACCTCTAGATCTGTTTGCTGTTGCTGAGGAACTATTGCGCTTCCTAATGATGTTATTGTAAAATTCTGGATGATTTTGAGTTTAAATTAGTTATCTGAAGATTATCGTTTTGAAATAGAAAAA]
[+] EMBL AU225317 [ gccgctCTTCTTTACTTTGATCGTTAGATCAGATCTGTAACAAGATTCTCTACCTCTAGATCTGTTTGCTGTTGCTGAGGAACTATTGCGCTTCCTAATGATGTTATTGTAAAATTCTGGATGATTTTGAGTTTAAATTAGTTATCTGAAGATTAGCGg ]
consensusID : consensus_6577#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence
[TTCTCTTCTCTTGCTCCTCCTCGACGCCATGGCCCCCAGATCGGACAGCGCCACCGGCGGCGCGGCCGCCGCCCAGGCCCACGGATCCGACTTCGACTCCATAGATCCCCTCTTCCACGTCCTCCGCGTGCTCCCCTTCTTCTTCCTCCGGCCGTCGCGCACCCGACTGAGGCTGACCTTCAACCTGGCGCTCCCCTTCCCCATGACCGTATTCGTCCTCATTCTTCTTACCTACTTCGCCGACGTTTTCGGACTTGTTTACGACGTTATCGTCTAGCCCCCCGGTATCGGTAGTGTACAGGACCCCGATACCGGTGCCGTTCGTCTCGAGTATAATCTCACGGTCGTGTCAACGGTCAGCATATTATTTAGGGGCCCTCCACCGGTATTATTGTTTTGAATTGGTGGCACCGGGATCATTCCCCCCACTCTTTTTCGTCTTTCGTTCCAGTGCCTCGTAGTTCACCTGCCCACTACCGCGGGTTTCGGCTGAATACGTCTATTCGTTTTTCTTTATCGCTAATGGCTCTTGCCCTTCTTTTCTATCATAGATCTCGGTTCCTTCTATGGAGTGGGCACCAAGTCCCTCCACCTCTGTTCGCTTAATTCACTCTCTGCTCAAGATCTTTCCTGACTTTTCATTCGATTTGCTTGTGCACGCTGACCCTCTGCACTTTCTAAT]
[+] EMBL BE041091 [TTCTCTTCTCTTGCTCCTCCTCGACGCCATGGCCCCCAGATCGGACAGCGCCACCGGCGGCGCGGCCGCCGCCCAGGCCCACGGATCCGACTTCGACTCCATAGATCCCCTCTTCCACGTCCTCCGCGTGCTCCCCTTCTTCTTCCTCCGGCCGTCGCGCACCCGACTGAGGCTGACCTTCAACCTGGCGCTCCCCTTCCCCATGACCGTATTCGTCCTCATTCTTCTTACCTACTTCGCCGACGTTTTCGGACTTGTTTACGACGTTATCGTCTAGCCCCCCGGTATCGGTAGTGTACAGGACCCCGATACCGGTGCCGTTCGTCTCGAGTATAATCTCACGGTCGTGTCAACGGTCAGCATATTATTTAGGGGCCCTCCACCGGTATTATTGTTTTGAATTGGTGGCACCGGGATCATTCCCCCCACTCTTTTTCGTCTTTCGTTCCAGTGCCTCGTAGTTCACCTGCCCACTACCGCGGGTTTCGGCTGAATACGTCTATTCGTTTTTCTTTATCGCTAATGGCTCTTGCCCTTCTTTTCTATCATAGATCTCGGTTCCTTCTATGGAGTGGGCACCAAGTCCCTCCACCTCTGTTCGCTTAATTCACTCTCTGCTCAAGATCTTTCCTGACTTTTCATTCGATTTGCTTGTGCACGCTGACCCTCTGCACTTTCTAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6577#0 TGCCCGTCGCACCCGATTGCCATCCCTACAAGCGAGGTAACGCAAGAATCCCCCATCACC 60
consensus_6577#1 ------------------------------------------------------------
consensus_6577#0 AAAACCCAGAGACTTCTCTCCTCTTGCTCCTCCTCGACGCCATGGCCCCCAGATCGGACA 120
consensus_6577#1 -------------TTCTCTTCTCTTGCTCCTCCTCGACGCCATGGCCCCCAGATCGGACA 47
****** ****************************************
consensus_6577#0 GCGCCACCGGCGGCGCGGCCGCCGCCCAGGCCCACGGATCCGACTTCGACTCCATAGATC 180
consensus_6577#1 GCGCCACCGGCGGCGCGGCCGCCGCCCAGGCCCACGGATCCGACTTCGACTCCATAGATC 107
************************************************************
consensus_6577#0 CCCTCTTCCACGTCCTCCGCGTGCTCCCCTTCTCCTTCCTCCGGCCGCCGCGCACCCGCC 240
consensus_6577#1 CCCTCTTCCACGTCCTCCGCGTGCTCCCCTTCTTCTTCCTCCGGCCGTCGCGCACCCGAC 167
********************************* ************* ********** *
consensus_6577#0 TGAGGCTGCCCTCCAACCTGGCGCTCCCCTCCCCCATGACCGTCTTCGCCCTCATCCTCC 300
consensus_6577#1 TGAGGCTGACCTTCAACCTGGCGCTCCCCTTCCCCATGACCGTATTCGTCCTCATTCTTC 227
******** *** ***************** ************ **** ****** ** *
consensus_6577#0 TCACCTACTTCGCCGTCGTCTCCGGCCTCGTCTACGACGTCATCGTCGAGCCCCCCGGCA 360
consensus_6577#1 TTACCTACTTCGCCGACGTTTTCGGACTTGTTTACGACGTTATCGTCTAGCCCCCCGGTA 287
* ************* *** * *** ** ** ******** ****** ********** *
consensus_6577#0 TCGGCAGCGTCCAGGACCCCGCCACCGGCGCCGTCCGCCCCGTCGTCTTCCTCCCCGGCC 420
consensus_6577#1 TCGGTAGTGTACAGGACCCCGATACCGGTGCCGTTCGTCTCGA-GTATAATCTCACGGTC 346
**** ** ** ********** ***** ***** ** * ** ** * * *** *
consensus_6577#0 GCGTCAACGGCCAGTACATCATCGAGGGGCTCTCCTCCGGCATCAT-GTTCGTCATCGGC 479
consensus_6577#1 GTGTCAACGGTCAGCATATTATTTAGGGGCCCTCCACCGGTATTATTGTTTTGAATTGGT 406
* ******** *** * ** ** ****** **** **** ** ** *** ** **
consensus_6577#0 GGCATCGGGATCATCCTCCTCGACCTCGC-CGTCGACCGCAACAG-GCCCCGGAGCCTTC 537
consensus_6577#1 GGCACCGGGATCATTCCCCCCACTCTTTTTCGTCTTTCGTTCCAGTGCCTCGTAGTTCAC 466
**** ********* * ** * ** **** ** *** *** ** ** *
consensus_6577#0 GCGTCTCCTTCGGTGG-CTCCGGC--GTCGCCGCCAT-CGTCATCGCGTA-CGCTA-TGG 591
consensus_6577#1 CTGCCCACTACCGCGGGTTTCGGCTGAATACGTCTATTCGTTTTTCTTTATCGCTAATGG 526
* * ** * * ** * **** * * ** *** * ** ***** ***
consensus_6577#0 C-CATGCTCTTCCTCCGCATCA-AGATCCCGGG-CTACCTATGG--TGAGGAACAAGCTT 646
consensus_6577#1 CTCTTGCCCTTCTTTTCTATCATAGATCTCGGTTCCTTCTATGGAGTGGGCACCAAGTCC 586
* * *** **** * **** ***** *** * ****** ** * * ****
consensus_6577#0 CTTTACTT-TGATCGTTAGATCAGATCTGTAA-CAAGATTCTCT---ACCTCTAGATCTG 701
consensus_6577#1 CTCCACCTCTGTTCGCTTAATTCACTCTCTGCTCAAGATCTTTCCTGACTTTTCATTCGA 646
** ** * ** *** * ** *** * ****** * ** * * **
consensus_6577#0 TTTGCTGTTGC-TGAGGAACTATTGCGCTTCCTAATGATGTTATTGTAAAATTCTGGATG 760
consensus_6577#1 TTTGCTTGTGCACGCTGACCCTCTGCACTTTCTAAT------------------------ 682
****** *** * ** * *** *** *****
consensus_6577#0 ATTTTGAGTTTAAATTAGTTATCTGAAGATTATCGTTTTGAAATAGAAAAA 811
consensus_6577#1 ---------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||