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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6585#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1535 fasta sequence
[ACCCGAACCCTCTCAACCCATGGCACTCTCCGCCGCTCGCCGGCTCTCCTCCGCCGCCGGCGGCGACGCCGCGCGGCC-TG-GGACGCTCTCTTCCCTCTTCGCGCCTCGAAGCTCTCCGAAGCCTCGCGCCCCGCGGCCGGAGCCCGGGGATGGGCCACCGCAGGAGCGGAGGAAGCCGAGGGCGA-GGCCGAGGCCGAGGTCGAGGCAGCCGTGGGGGGAGGAGGCGGCGGCGCTGCTCCGGAGGTTCTACGACGGCGGGTACCTCCCGGGGCCTGACTTGTCGGTGGCGCCGCACGT-CTTGTCCCCCGACGTCGT-CAAGGGCGCGGCCGAGCGGTTCGGTCATGATCACCAGGTCGTCGCCAAATGGTTATCTGGAAGTGACTTGAAGAAGGTTGCGTTGTTTGGTTGTCCATCTGTTGAGCGAAGAACAGTTTTTGCATCAAAAAGACTACGAGCTTTCTTTAAAATCCAGGAAGCTAAAATATGCGGCTCTTGTAAGATGAGAAATTCATGCCAGTTTGTTAACCAGGAAGTATCTAGGCATGATAAAGTGATCCTGTCAGATACTATGAGAATTCTTACTTTATTCGTCCTGGATACATGTCCTCAGCAACTCAAGGTTACTCCTGAATTGAAAGCTAGCATTTGCAAGCTTGTCAAGGACACCATAAACCTAAGCCAATAATTACTAAGCAGATCATTTGTAACTGTAGAAGGTACTTGAAGTATACCAGAGAGGTGACCAAATTTATTTGGATCAAATGGATGAAGCTCATATTTTGTTTGCAAATACTACCTGAAGCAACTCAACCTGATTGCACCGCAGAAGCAGATGCGCTGAAGCTAAGATGCAGTGGTTCACCCAGGAATCTTGCATCAGTCAGACTCCCCATGTGATGTTGTTTAGCTAGCTGTAAACCGTTTAGTTTGGACAAGGGAGAGGAACAGTTTGGCTTCAGACTAACTGGACTGCTTCTCTGCATGGCACCTCTCTTGTAGAATAATCCAGGATAGCTGGTTTCCTGAGGCGAGGTCGGTAGGTCACTTCATCTATGTGATAATGTGAACCCTTCCATATTGCCGCCTGATGAGAACTGAATCTTCTACGGAAGTGATGCTCTACTCTCTACTCTGTTTTTTTTTCCTTTTGGTTTCTTTTCCCTAATCTCTTGGACAGTTCAGTTTTGATGGATTCTTCTGGCCTCGTGTTGATGATCAAAGTATTCAAGTCGTCGTCTCGTGCTGATGGCTGCTTGCTTGATTTTAAACTTCGGCTGAAACTCGGAGCCTCTTTCACATTTGTCCGGTCAGCGATTGCTTTTCTTCTCTCCCCCGGTTTGCCGCTTGCATGGTAGTGCCTGCCACTAGTAATCTAATAGCATAGGTCTTCTTGTTAACTTCTCTCACATAATAAGTCAAGTAGTAGTACTTCAGTTAAGCAAGATTGATCATGTCAGAAAGCATGCTATTTGAACGTTTTGAAAGGTTGAATCACAGGAGCGTGATGCATGCATCTCACTGATGCAGCAGAGAAT]
[+] EMBL AK106329 [ACCCGAACCCTCTCAACCCATGGCACTCTCCGCCGCTCGCCGGCTCTCCTCCGCCGCCGGCGGCGACGCCGCGCGGCC TG GGACGCTCTCTTCCCTCTTCGCGCCTCGAAGCTCTCCGAAGCCTCGCGCCCCGCGGCCGGAGCCCGGGGATGGGCCACCGCAGGAGCGGAGGAAGCCGAGGGCGA GGCCGAGGCCGAGGTCGAGGCAGCCGTGGGGGGAGGAGGCGGCGGCGCTGCTCCGGAGGTTCTACGACGGCGGGTACCTCCCGGGGCCTGACTTGTCGGTGGCGCCGCACGT CTTGTCCCCCGACGTCGT CAAGGGCGCGGCCGAGCGGTTCGGTCATGATCACCAGGTCGTCGCCAAATGGTTATCTGGAAGTGACTTGAAGAAGGTTGCGTTGTTTGGTTGTCCATCTGTTGAGCGAAGAACAGTTTTTGCATCAAAAAGACTACGAGCTTTCTTTAAAATCCAGGAAGCTAAAATATGCGGCTCTTGTAAGATGAGAAATTCATGCCAGTTTGTTAACCAGGAAGTATCTAGGCATGATAAAGTGATCCTGTCAGATACTATGAGAATTCTTACTTTATTCGTCCTGGATACATGTCCTCAGCAACTCAAGGTTACTCCTGAATTGAAAGCTAGCATTTGCAAGCTTGTCAAGGACACCATAAACCTAAGCCAATAATTACTAAGCAGATCATTTGTAACTGTAGAAGGTACTTGAAGTATACCAGAGAGGTGACCAAATTTATTTGGATCAAATGGATGAAGCTCATATTTTGTTTGCAAATACTACCTGAAGCAACTCAACCTGATTGCACCGCAGAAGCAGATGCGCTGAAGCTAAGATGCAGTGGTTCACCCAGGAATCTTGCATCAGTCAGACTCCCCATGTGATGTTGTTTAGCTAGCTGTAAACCGTTTAGTTTGGACAAGGGAGAGGAACAGTTTGGCTTCAGACTAACTGGACTGCTTCTCTGCATGGCACCTCTCTTGTAGAATAATCCAGGATAGCTGGTTTCCTGAGGCGAGGTCGGTAGGTCACTTCATCTATGTGATAATGTGAACCCTTCCATATTGCCGCCTGATGAGAACTGAATCTTCTACGGAAGTGATGCTCTACTCTCTACTCTGTTTTTTTTTCCTTTTGGTTTCTTTTCCCTAATCTCTTGGACAGTTCAGTTTTGATGGATTCTTCTGGCCTCGTGTTGATGATCAAAGTATTCAAGTCGTCGTCTCGTGCTGATGGCTGCTTGCTTGATTTTAAACTTCGGCTGAAACTCGGAGCCTCTTTCACATTTGTCCGGTCAGCGATTGCTTTTCTTCTCTCCCCCGGTTTGCCGCTTGCATGGTAGTGCCTGCCACTAGTAATCTAATAGCATAGGTCTTCTTGTTAACTTCTCTCACATAATAAGTCAAGTAGTAGTACTTCAGTTAAGCAAGATTGATCATGTCAGAAAGCATGCTATTTGAACGTTTTGAAAGGTTGAATCACAGGAGCGTGATGCATGCATCTCACTGATGCAGCAGAGAAT]
[+] EMBL OSR23882A [ TCTCAACCCATGGCACTCTCCGCNGCTCGCCGGCTCTCCTCCGNCGCCG GGCGACGCCG NCGGCCNTGNGGACGCTCTCTTCCCTCTTCGCGCCTCGAAGCTCTCCGAAGNCTCGCGNCCCGTGGCCGGAGCCCGGGGATGGGCCACCGCA GAGCGGAGGAAGCCGAGGGCGATGGCCGAGGCCGAGGTCGAGGCAGCCGTNGGGGGAGGAGGCGGCGGCGCTGCTCCGGAGGTTCTACGACGGCGGGTACCTCCCGGGGNCTGACTTGTCGGTGGCGCCGCACGTNTTTGTNCCCCGACGTCGTNAAAGGGCGCGGCC AACGGTTCGGTAATGATCAACAGGTCGTCGCa ]
consensusID : consensus_6585#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[AGAGGACGAGCCAAGGGGGGATGAAGCTCATATTTGTTTGCAAATACTACCTGAAGAAGCAGATGCCCTGAAGCTAAGATGCAGTGGTTCACCCAGGAATCTTGCATCAGTCAGACTCCCCATGTGATGTTGTTTAGCTAGCTGTAAACCATTTAGTTTGGACAAGGTTTTGTTGGCCATATTATATTCGAAGCCCTATGGTTCATGTGCCCCTGAAGCTCCAATTGGCATGGATCCCCTTATCCTATCAGCGCATGCTAACTTGGTAAAATATGATGCAGTAGAAAAAGGGAGGCCCTTTTCAGACCAATGCCCCGTCACTTTCTACCTTTACCTTGTAGCCACGAGCTTTTCTTTTCCTTCATATGATGGAGATTCTTGTGCTGTATTCTTGTCCAACCATGGAACACTGGGTCTTTAGCAACCATTGTCACGTAGTGATGTAGTCGACAGGATCAAGAGTTCGTTTTCAGACTGACTGGAAACACTGATCTTTGGTGTGTTGTGCAGGGAGAGGAACAGTTTGGCTTCAGACTCACTGGACTGCTTCTTTGCATGGCACCTCTCTTGTAGAATAATCCCGGATAGCTGGTCTCCTGAGGCGAGGTCGGTAGGTCCCTTTATCTAGGTGATAATGTGAACCCTTCCATATTGCCGCCTGAAAAAAAAAAAAAAAAAAAAAAGA]
[-] EMBL CA759775 [AGAGGACGAGCCAAGGGGGGATGAAGCTCATATTTGTTTGCAAATACTACCTGAAGAAGCAGATGCCCTGAAGCTAAGATGCAGTGGTTCACCCAGGAATCTTGCATCAGTCAGACTCCCCATGTGATGTTGTTTAGCTAGCTGTAAACCATTTAGTTTGGACAAGGTTTTGTTGGCCATATTATATTCGAAGCCCTATGGTTCATGTGCCCCTGAAGCTCCAATTGGCATGGATCCCCTTATCCTATCAGCGCATGCTAACTTGGTAAAATATGATGCAGTAGAAAAAGGGAGGCCCTTTTCAGACCAATGCCCCGTCACTTTCTACCTTTACCTTGTAGCCACGAGCTTTTCTTTTCCTTCATATGATGGAGATTCTTGTGCTGTATTCTTGTCCAACCATGGAACACTGGGTCTTTAGCAACCATTGTCACGTAGTGATGTAGTCGACAGGATCAAGAGTTCGTTTTCAGACTGACTGGAAACACTGATCTTTGGTGTGTTGTGCAGGGAGAGGAACAGTTTGGCTTCAGACTCACTGGACTGCTTCTTTGCATGGCACCTCTCTTGTAGAATAATCCCGGATAGCTGGTCTCCTGAGGCGAGGTCGGTAGGTCCCTTTATCTAGGTGATAATGTGAACCCTTCCATATTGCCGCCTGAAAAAAAAAAAAAAAAAAAAAAGA]
consensusID : consensus_6585#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence
[TTGAAAGCTAGCATTTGCAAGCTTGTCAAGGACACCATAAACCTAAGCCAATAATTACTAAGCAGATCATTTGTAACTGTAGAAGGTACTTGAAGTATACCAGGTAGACAAGCATTCATGTTTCGTACATTTTATTTACTTGATACTATGTGACAAGGTNTAAAACATAATTATAACATGTTTTTTTTTNTGGTGCTTTTGCCAGAGAGGTGACCAAATTTATTTGGATCAAATGGATGAAGCTCATATTTTGTTTGCAAATACTACCTGAAGGTTAGAGCGCTGACCTCGCATATTTATATTGTGTGTAACTTCTGTTGAGGCAGGGGTATGTGAACCTGACTGAGTAGCAATTGACGATAGCTGTAAACTGCCAAGCTCATACTGTTTGAATACATTATTTGATTCCTTTAAGTCCAAAAAAAAAAAA]
[+] EMBL AU173352 [TTGAAAGCTAGCATTTGCAAGCTTGTCAAGGACACCATAAACCTAAGCCAATAATTACTAAGCAGATCATTTGTAACTGTAGAAGGTACTTGAAGTATACCAGGTAGACAAGCATTCATGTTTCGTACATTTTATTTACTTGATACTATGTGACAAGGTNTAAAACATAATTATAACATGTTTTTTTTTNTGGTGCTTTTGCCAGAGAGGTGACCAAATTTATTTGGATCAAATGGATGAAGCTCATATTTTGTTTGCAAATACTACCTGAAGGTTAGAGCGCTGACCTCGCATATTTATATTGTGTGTAACTTCTGTTGAGGCAGGGGTATGTGAACCTGACTGAGTAGCAATTGACGATAGCTGTAAACTGCCAAGCTCATACTGTTTGAATACATTATTTGATTCCTTTAAGTCCAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6585#0 ACCCGAACCCTCTCAACCCATGGCACTCTCCGCCGCTCGCCGGCTCTCCTCCGCCGCCGG 60
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 ------------------------------------------------------------
consensus_6585#0 CGGCGACGCCGCGCGGCCTGGGACGCTCTCTTCCCTCTTCGCGCCTCGAAGCTCTCCGAA 120
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 ------------------------------------------------------------
consensus_6585#0 GCCTCGCGCCCCGCGGCCGGAGCCCGGGGATGGGCCACCGCAGGAGCGGAGGAAGCCGAG 180
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 ------------------------------------------------------------
consensus_6585#0 GGCGAGGCCGAGGCCGAGGTCGAGGCAGCCGTGGGGGGAGGAGGCGGCGGCGCTGCTCCG 240
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 ------------------------------------------------------------
consensus_6585#0 GAGGTTCTACGACGGCGGGTACCTCCCGGGGCCTGACTTGTCGGTGGCGCCGCACGTCTT 300
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 ------------------------------------------------------------
consensus_6585#0 GTCCCCCGACGTCGTCAAGGGCGCGGCCGAGCGGTTCGGTCATGATCACCAGGTCGTCGC 360
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 ------------------------------------------------------------
consensus_6585#0 CAAATGGTTATCTGGAAGTGACTTGAAGAAGGTTGCGTTGTTTGGTTGTCCATCTGTTGA 420
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 ------------------------------------------------------------
consensus_6585#0 GCGAAGAACAGTTTTTGCATCAAAAAGACTACGAGCTTTCTTTAAAATCCAGGAAGCTAA 480
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 -AGAGGACGAGCCAAGGGGGGATGAAGCTCATATTTGTTTGCAAATACTACCTGAAGAAG 59
consensus_6585#0 AATATGCGGCTCTTGTAAGATG-AGAAATTCATGCCAGTTTGTTA-ACCAGGAAGTATCT 538
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 CAGATGCCCTGAAGCTAAGATGCAGTGGTTCACCCAGGAATCTTGCATCAGTCAGACTCC 119
consensus_6585#0 AGGCATGATAAAGTGATCCTGTCAGATACTATGAGAATTCTTACTTTATTCGTCCTGGAT 598
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 CCATGTGATGTTGTTTAGCTAGCTGTAAACCATTTAGTTTGGACAAGGTTT-TGTTGGCC 178
consensus_6585#0 ACATGTCCTCAGCAACTCAAGGTTACTCCTGAATTGAAAGCTAGCATTTGCAAGCTTGTC 658
consensus_6585#2 ---------------------------------TTGAAAGCTAGCATTTGCAAGCTTGTC 27
consensus_6585#1 ATATTATATTCGAAGCCCTATGGTTCATGTGCCCCTGAAGCT-------CCAA--TTGGC 229
***** *** *** *
consensus_6585#0 AAGGACACCATAAACCTA--AGCCAATAATTACTAAGCAGATCATTTGTAACTGTAGAAG 716
consensus_6585#2 AAGGACACCATAAACCTA--AGCCAATAATTACTAAGCAGATCATTTGTAACTGTAGAAG 85
consensus_6585#1 ATGGATCCCCTTATCCTATCAGCGCATGCTAACTTGGTAAA--ATATGATGCAGTAGAAA 287
* *** ** * * **** *** ** * *** * * * ** ** * ******
consensus_6585#0 GTACTTGAAGTATACCAGAGAGGTGACCAAATTTATT-TGGATCAAATGGATGAAGCTCA 775
consensus_6585#2 GTACTTGAAGTATACCAGGTAGACAAGCATTCATGTT-TCGTACATTTT-ATTTACTTGA 143
consensus_6585#1 AAGGGAGGCCCTTTTCAGACCAATGCCCCGTCACTTTCTACCTTTACCTTGTAGCCACGA 347
* * *** * ** * * *
consensus_6585#0 TATTTTGTTTGCAAATACTACCTGAAGCAACTCAACCTGATTGCACCGCAGAAGCAGATG 835
consensus_6585#2 TACTATGTGACAAGGTNTAAAACATAATTAT--AACATGTTTTTTTTTNTGGTGCT--TT 199
consensus_6585#1 GCTTTTCTTTTCCTTCATATGATGGAGATTCTTGTGCTGTATTCTTGTCCAACCATGGAA 407
* * * * ** *
consensus_6585#0 CGCTGAAGCTAAGATGCAGTGGTTCACCCAG--GAATCTTGCATCAGTCAGACTCCCCAT 893
consensus_6585#2 TGCCAGAG---AGGTGACCAAATTTATTTGG--ATCAAATGGATGAAGCTCATATTTTGT 254
consensus_6585#1 CACTGGGTCTTTAGCAACCATTGTCACGTAGTGATGTAGTCGACAGGATCAAGAGTTCGT 467
* * * * * * * *
consensus_6585#0 GTGATGTTGTTTAGCTAGCTGTAAACCGTTTAGTTTGGACAAGGGAGAGGAACAGTTTGG 953
consensus_6585#2 TTGCAAATACTACCTGAAGGTTAGAGCGCTGACCTCGCATATTTATATTGT---GTGTAA 311
consensus_6585#1 TTTCAGACTGACTGGAAACACTGATCTTTGGTGTGTTGTGCAGGGAGAGGAACAGTTTGG 527
* * * * ** *
consensus_6585#0 CTTCAGACTAACTGGACTGCTTCTCTGCATGGCACCTCTCTTGTAGAATAATCCAGGATA 1013
consensus_6585#2 CTTCTGTTGAGGCAGGG---------GTATGTGAACCTGACTGAGTAGCAATTGACGATA 362
consensus_6585#1 CTTCAGACTCACTGGACTGCTTCTTTGCATGGCACCTCTCTTGTAGAATAATCCCGGATA 587
**** * * * *** * * ** * *** ****
consensus_6585#0 GCTGGTTTCCTGAGGCGAGGTCGGTAGGTCACTTCATCTATGTGATAATGTGAACCCTTC 1073
consensus_6585#2 GCTGTAAACT---GCCAAGCTCA------TACTGTTTGAATAC-ATTATTTGATTCCTTT 412
consensus_6585#1 GCTGGTCTCCTGAGGCGAGGTCGGTAGGTCCCTTTATCTAGGTGATAATGTGAACCCTTC 647
**** * * * ** ** ** * * ** ** *** ****
consensus_6585#0 CATATTGCCGCCTGATGAGAACTGAATCTTCTACGGAAGTGATGCTCTACTCTCTACTCT 1133
consensus_6585#2 AA-------GTCCAAAAAAAAAAAA----------------------------------- 430
consensus_6585#1 CATATTGCCGCCTGAAAAAAAAAAAAAAAAAAAAAAGA---------------------- 685
* * * * * ** *
consensus_6585#0 GTTTTTTTTTCCTTTTGGTTTCTTTTCCCTAATCTCTTGGACAGTTCAGTTTTGATGGAT 1193
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 ------------------------------------------------------------
consensus_6585#0 TCTTCTGGCCTCGTGTTGATGATCAAAGTATTCAAGTCGTCGTCTCGTGCTGATGGCTGC 1253
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 ------------------------------------------------------------
consensus_6585#0 TTGCTTGATTTTAAACTTCGGCTGAAACTCGGAGCCTCTTTCACATTTGTCCGGTCAGCG 1313
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 ------------------------------------------------------------
consensus_6585#0 ATTGCTTTTCTTCTCTCCCCCGGTTTGCCGCTTGCATGGTAGTGCCTGCCACTAGTAATC 1373
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 ------------------------------------------------------------
consensus_6585#0 TAATAGCATAGGTCTTCTTGTTAACTTCTCTCACATAATAAGTCAAGTAGTAGTACTTCA 1433
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 ------------------------------------------------------------
consensus_6585#0 GTTAAGCAAGATTGATCATGTCAGAAAGCATGCTATTTGAACGTTTTGAAAGGTTGAATC 1493
consensus_6585#2 ------------------------------------------------------------
consensus_6585#1 ------------------------------------------------------------
consensus_6585#0 ACAGGAGCGTGATGCATGCATCTCACTGATGCAGCAGAGAAT 1535
consensus_6585#2 ------------------------------------------
consensus_6585#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||