These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6585#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1535 fasta sequence [ACCCGAACCCTCTCAACCCATGGCACTCTCCGCCGCTCGCCGGCTCTCCTCCGCCGCCGGCGGCGACGCCGCGCGGCC-TG-GGACGCTCTCTTCCCTCTTCGCGCCTCGAAGCTCTCCGAAGCCTCGCGCCCCGCGGCCGGAGCCCGGGGATGGGCCACCGCAGGAGCGGAGGAAGCCGAGGGCGA-GGCCGAGGCCGAGGTCGAGGCAGCCGTGGGGGGAGGAGGCGGCGGCGCTGCTCCGGAGGTTCTACGACGGCGGGTACCTCCCGGGGCCTGACTTGTCGGTGGCGCCGCACGT-CTTGTCCCCCGACGTCGT-CAAGGGCGCGGCCGAGCGGTTCGGTCATGATCACCAGGTCGTCGCCAAATGGTTATCTGGAAGTGACTTGAAGAAGGTTGCGTTGTTTGGTTGTCCATCTGTTGAGCGAAGAACAGTTTTTGCATCAAAAAGACTACGAGCTTTCTTTAAAATCCAGGAAGCTAAAATATGCGGCTCTTGTAAGATGAGAAATTCATGCCAGTTTGTTAACCAGGAAGTATCTAGGCATGATAAAGTGATCCTGTCAGATACTATGAGAATTCTTACTTTATTCGTCCTGGATACATGTCCTCAGCAACTCAAGGTTACTCCTGAATTGAAAGCTAGCATTTGCAAGCTTGTCAAGGACACCATAAACCTAAGCCAATAATTACTAAGCAGATCATTTGTAACTGTAGAAGGTACTTGAAGTATACCAGAGAGGTGACCAAATTTATTTGGATCAAATGGATGAAGCTCATATTTTGTTTGCAAATACTACCTGAAGCAACTCAACCTGATTGCACCGCAGAAGCAGATGCGCTGAAGCTAAGATGCAGTGGTTCACCCAGGAATCTTGCATCAGTCAGACTCCCCATGTGATGTTGTTTAGCTAGCTGTAAACCGTTTAGTTTGGACAAGGGAGAGGAACAGTTTGGCTTCAGACTAACTGGACTGCTTCTCTGCATGGCACCTCTCTTGTAGAATAATCCAGGATAGCTGGTTTCCTGAGGCGAGGTCGGTAGGTCACTTCATCTATGTGATAATGTGAACCCTTCCATATTGCCGCCTGATGAGAACTGAATCTTCTACGGAAGTGATGCTCTACTCTCTACTCTGTTTTTTTTTCCTTTTGGTTTCTTTTCCCTAATCTCTTGGACAGTTCAGTTTTGATGGATTCTTCTGGCCTCGTGTTGATGATCAAAGTATTCAAGTCGTCGTCTCGTGCTGATGGCTGCTTGCTTGATTTTAAACTTCGGCTGAAACTCGGAGCCTCTTTCACATTTGTCCGGTCAGCGATTGCTTTTCTTCTCTCCCCCGGTTTGCCGCTTGCATGGTAGTGCCTGCCACTAGTAATCTAATAGCATAGGTCTTCTTGTTAACTTCTCTCACATAATAAGTCAAGTAGTAGTACTTCAGTTAAGCAAGATTGATCATGTCAGAAAGCATGCTATTTGAACGTTTTGAAAGGTTGAATCACAGGAGCGTGATGCATGCATCTCACTGATGCAGCAGAGAAT] [+] EMBL AK106329 [ACCCGAACCCTCTCAACCCATGGCACTCTCCGCCGCTCGCCGGCTCTCCTCCGCCGCCGGCGGCGACGCCGCGCGGCC TG GGACGCTCTCTTCCCTCTTCGCGCCTCGAAGCTCTCCGAAGCCTCGCGCCCCGCGGCCGGAGCCCGGGGATGGGCCACCGCAGGAGCGGAGGAAGCCGAGGGCGA GGCCGAGGCCGAGGTCGAGGCAGCCGTGGGGGGAGGAGGCGGCGGCGCTGCTCCGGAGGTTCTACGACGGCGGGTACCTCCCGGGGCCTGACTTGTCGGTGGCGCCGCACGT CTTGTCCCCCGACGTCGT CAAGGGCGCGGCCGAGCGGTTCGGTCATGATCACCAGGTCGTCGCCAAATGGTTATCTGGAAGTGACTTGAAGAAGGTTGCGTTGTTTGGTTGTCCATCTGTTGAGCGAAGAACAGTTTTTGCATCAAAAAGACTACGAGCTTTCTTTAAAATCCAGGAAGCTAAAATATGCGGCTCTTGTAAGATGAGAAATTCATGCCAGTTTGTTAACCAGGAAGTATCTAGGCATGATAAAGTGATCCTGTCAGATACTATGAGAATTCTTACTTTATTCGTCCTGGATACATGTCCTCAGCAACTCAAGGTTACTCCTGAATTGAAAGCTAGCATTTGCAAGCTTGTCAAGGACACCATAAACCTAAGCCAATAATTACTAAGCAGATCATTTGTAACTGTAGAAGGTACTTGAAGTATACCAGAGAGGTGACCAAATTTATTTGGATCAAATGGATGAAGCTCATATTTTGTTTGCAAATACTACCTGAAGCAACTCAACCTGATTGCACCGCAGAAGCAGATGCGCTGAAGCTAAGATGCAGTGGTTCACCCAGGAATCTTGCATCAGTCAGACTCCCCATGTGATGTTGTTTAGCTAGCTGTAAACCGTTTAGTTTGGACAAGGGAGAGGAACAGTTTGGCTTCAGACTAACTGGACTGCTTCTCTGCATGGCACCTCTCTTGTAGAATAATCCAGGATAGCTGGTTTCCTGAGGCGAGGTCGGTAGGTCACTTCATCTATGTGATAATGTGAACCCTTCCATATTGCCGCCTGATGAGAACTGAATCTTCTACGGAAGTGATGCTCTACTCTCTACTCTGTTTTTTTTTCCTTTTGGTTTCTTTTCCCTAATCTCTTGGACAGTTCAGTTTTGATGGATTCTTCTGGCCTCGTGTTGATGATCAAAGTATTCAAGTCGTCGTCTCGTGCTGATGGCTGCTTGCTTGATTTTAAACTTCGGCTGAAACTCGGAGCCTCTTTCACATTTGTCCGGTCAGCGATTGCTTTTCTTCTCTCCCCCGGTTTGCCGCTTGCATGGTAGTGCCTGCCACTAGTAATCTAATAGCATAGGTCTTCTTGTTAACTTCTCTCACATAATAAGTCAAGTAGTAGTACTTCAGTTAAGCAAGATTGATCATGTCAGAAAGCATGCTATTTGAACGTTTTGAAAGGTTGAATCACAGGAGCGTGATGCATGCATCTCACTGATGCAGCAGAGAAT] [+] EMBL OSR23882A [ TCTCAACCCATGGCACTCTCCGCNGCTCGCCGGCTCTCCTCCGNCGCCG GGCGACGCCG NCGGCCNTGNGGACGCTCTCTTCCCTCTTCGCGCCTCGAAGCTCTCCGAAGNCTCGCGNCCCGTGGCCGGAGCCCGGGGATGGGCCACCGCA GAGCGGAGGAAGCCGAGGGCGATGGCCGAGGCCGAGGTCGAGGCAGCCGTNGGGGGAGGAGGCGGCGGCGCTGCTCCGGAGGTTCTACGACGGCGGGTACCTCCCGGGGNCTGACTTGTCGGTGGCGCCGCACGTNTTTGTNCCCCGACGTCGTNAAAGGGCGCGGCC AACGGTTCGGTAATGATCAACAGGTCGTCGCa ] consensusID : consensus_6585#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [AGAGGACGAGCCAAGGGGGGATGAAGCTCATATTTGTTTGCAAATACTACCTGAAGAAGCAGATGCCCTGAAGCTAAGATGCAGTGGTTCACCCAGGAATCTTGCATCAGTCAGACTCCCCATGTGATGTTGTTTAGCTAGCTGTAAACCATTTAGTTTGGACAAGGTTTTGTTGGCCATATTATATTCGAAGCCCTATGGTTCATGTGCCCCTGAAGCTCCAATTGGCATGGATCCCCTTATCCTATCAGCGCATGCTAACTTGGTAAAATATGATGCAGTAGAAAAAGGGAGGCCCTTTTCAGACCAATGCCCCGTCACTTTCTACCTTTACCTTGTAGCCACGAGCTTTTCTTTTCCTTCATATGATGGAGATTCTTGTGCTGTATTCTTGTCCAACCATGGAACACTGGGTCTTTAGCAACCATTGTCACGTAGTGATGTAGTCGACAGGATCAAGAGTTCGTTTTCAGACTGACTGGAAACACTGATCTTTGGTGTGTTGTGCAGGGAGAGGAACAGTTTGGCTTCAGACTCACTGGACTGCTTCTTTGCATGGCACCTCTCTTGTAGAATAATCCCGGATAGCTGGTCTCCTGAGGCGAGGTCGGTAGGTCCCTTTATCTAGGTGATAATGTGAACCCTTCCATATTGCCGCCTGAAAAAAAAAAAAAAAAAAAAAAGA] [-] EMBL CA759775 [AGAGGACGAGCCAAGGGGGGATGAAGCTCATATTTGTTTGCAAATACTACCTGAAGAAGCAGATGCCCTGAAGCTAAGATGCAGTGGTTCACCCAGGAATCTTGCATCAGTCAGACTCCCCATGTGATGTTGTTTAGCTAGCTGTAAACCATTTAGTTTGGACAAGGTTTTGTTGGCCATATTATATTCGAAGCCCTATGGTTCATGTGCCCCTGAAGCTCCAATTGGCATGGATCCCCTTATCCTATCAGCGCATGCTAACTTGGTAAAATATGATGCAGTAGAAAAAGGGAGGCCCTTTTCAGACCAATGCCCCGTCACTTTCTACCTTTACCTTGTAGCCACGAGCTTTTCTTTTCCTTCATATGATGGAGATTCTTGTGCTGTATTCTTGTCCAACCATGGAACACTGGGTCTTTAGCAACCATTGTCACGTAGTGATGTAGTCGACAGGATCAAGAGTTCGTTTTCAGACTGACTGGAAACACTGATCTTTGGTGTGTTGTGCAGGGAGAGGAACAGTTTGGCTTCAGACTCACTGGACTGCTTCTTTGCATGGCACCTCTCTTGTAGAATAATCCCGGATAGCTGGTCTCCTGAGGCGAGGTCGGTAGGTCCCTTTATCTAGGTGATAATGTGAACCCTTCCATATTGCCGCCTGAAAAAAAAAAAAAAAAAAAAAAGA] consensusID : consensus_6585#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence [TTGAAAGCTAGCATTTGCAAGCTTGTCAAGGACACCATAAACCTAAGCCAATAATTACTAAGCAGATCATTTGTAACTGTAGAAGGTACTTGAAGTATACCAGGTAGACAAGCATTCATGTTTCGTACATTTTATTTACTTGATACTATGTGACAAGGTNTAAAACATAATTATAACATGTTTTTTTTTNTGGTGCTTTTGCCAGAGAGGTGACCAAATTTATTTGGATCAAATGGATGAAGCTCATATTTTGTTTGCAAATACTACCTGAAGGTTAGAGCGCTGACCTCGCATATTTATATTGTGTGTAACTTCTGTTGAGGCAGGGGTATGTGAACCTGACTGAGTAGCAATTGACGATAGCTGTAAACTGCCAAGCTCATACTGTTTGAATACATTATTTGATTCCTTTAAGTCCAAAAAAAAAAAA] [+] EMBL AU173352 [TTGAAAGCTAGCATTTGCAAGCTTGTCAAGGACACCATAAACCTAAGCCAATAATTACTAAGCAGATCATTTGTAACTGTAGAAGGTACTTGAAGTATACCAGGTAGACAAGCATTCATGTTTCGTACATTTTATTTACTTGATACTATGTGACAAGGTNTAAAACATAATTATAACATGTTTTTTTTTNTGGTGCTTTTGCCAGAGAGGTGACCAAATTTATTTGGATCAAATGGATGAAGCTCATATTTTGTTTGCAAATACTACCTGAAGGTTAGAGCGCTGACCTCGCATATTTATATTGTGTGTAACTTCTGTTGAGGCAGGGGTATGTGAACCTGACTGAGTAGCAATTGACGATAGCTGTAAACTGCCAAGCTCATACTGTTTGAATACATTATTTGATTCCTTTAAGTCCAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6585#0 ACCCGAACCCTCTCAACCCATGGCACTCTCCGCCGCTCGCCGGCTCTCCTCCGCCGCCGG 60 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 ------------------------------------------------------------ consensus_6585#0 CGGCGACGCCGCGCGGCCTGGGACGCTCTCTTCCCTCTTCGCGCCTCGAAGCTCTCCGAA 120 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 ------------------------------------------------------------ consensus_6585#0 GCCTCGCGCCCCGCGGCCGGAGCCCGGGGATGGGCCACCGCAGGAGCGGAGGAAGCCGAG 180 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 ------------------------------------------------------------ consensus_6585#0 GGCGAGGCCGAGGCCGAGGTCGAGGCAGCCGTGGGGGGAGGAGGCGGCGGCGCTGCTCCG 240 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 ------------------------------------------------------------ consensus_6585#0 GAGGTTCTACGACGGCGGGTACCTCCCGGGGCCTGACTTGTCGGTGGCGCCGCACGTCTT 300 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 ------------------------------------------------------------ consensus_6585#0 GTCCCCCGACGTCGTCAAGGGCGCGGCCGAGCGGTTCGGTCATGATCACCAGGTCGTCGC 360 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 ------------------------------------------------------------ consensus_6585#0 CAAATGGTTATCTGGAAGTGACTTGAAGAAGGTTGCGTTGTTTGGTTGTCCATCTGTTGA 420 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 ------------------------------------------------------------ consensus_6585#0 GCGAAGAACAGTTTTTGCATCAAAAAGACTACGAGCTTTCTTTAAAATCCAGGAAGCTAA 480 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 -AGAGGACGAGCCAAGGGGGGATGAAGCTCATATTTGTTTGCAAATACTACCTGAAGAAG 59 consensus_6585#0 AATATGCGGCTCTTGTAAGATG-AGAAATTCATGCCAGTTTGTTA-ACCAGGAAGTATCT 538 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 CAGATGCCCTGAAGCTAAGATGCAGTGGTTCACCCAGGAATCTTGCATCAGTCAGACTCC 119 consensus_6585#0 AGGCATGATAAAGTGATCCTGTCAGATACTATGAGAATTCTTACTTTATTCGTCCTGGAT 598 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 CCATGTGATGTTGTTTAGCTAGCTGTAAACCATTTAGTTTGGACAAGGTTT-TGTTGGCC 178 consensus_6585#0 ACATGTCCTCAGCAACTCAAGGTTACTCCTGAATTGAAAGCTAGCATTTGCAAGCTTGTC 658 consensus_6585#2 ---------------------------------TTGAAAGCTAGCATTTGCAAGCTTGTC 27 consensus_6585#1 ATATTATATTCGAAGCCCTATGGTTCATGTGCCCCTGAAGCT-------CCAA--TTGGC 229 ***** *** *** * consensus_6585#0 AAGGACACCATAAACCTA--AGCCAATAATTACTAAGCAGATCATTTGTAACTGTAGAAG 716 consensus_6585#2 AAGGACACCATAAACCTA--AGCCAATAATTACTAAGCAGATCATTTGTAACTGTAGAAG 85 consensus_6585#1 ATGGATCCCCTTATCCTATCAGCGCATGCTAACTTGGTAAA--ATATGATGCAGTAGAAA 287 * *** ** * * **** *** ** * *** * * * ** ** * ****** consensus_6585#0 GTACTTGAAGTATACCAGAGAGGTGACCAAATTTATT-TGGATCAAATGGATGAAGCTCA 775 consensus_6585#2 GTACTTGAAGTATACCAGGTAGACAAGCATTCATGTT-TCGTACATTTT-ATTTACTTGA 143 consensus_6585#1 AAGGGAGGCCCTTTTCAGACCAATGCCCCGTCACTTTCTACCTTTACCTTGTAGCCACGA 347 * * *** * ** * * * consensus_6585#0 TATTTTGTTTGCAAATACTACCTGAAGCAACTCAACCTGATTGCACCGCAGAAGCAGATG 835 consensus_6585#2 TACTATGTGACAAGGTNTAAAACATAATTAT--AACATGTTTTTTTTTNTGGTGCT--TT 199 consensus_6585#1 GCTTTTCTTTTCCTTCATATGATGGAGATTCTTGTGCTGTATTCTTGTCCAACCATGGAA 407 * * * * ** * consensus_6585#0 CGCTGAAGCTAAGATGCAGTGGTTCACCCAG--GAATCTTGCATCAGTCAGACTCCCCAT 893 consensus_6585#2 TGCCAGAG---AGGTGACCAAATTTATTTGG--ATCAAATGGATGAAGCTCATATTTTGT 254 consensus_6585#1 CACTGGGTCTTTAGCAACCATTGTCACGTAGTGATGTAGTCGACAGGATCAAGAGTTCGT 467 * * * * * * * * consensus_6585#0 GTGATGTTGTTTAGCTAGCTGTAAACCGTTTAGTTTGGACAAGGGAGAGGAACAGTTTGG 953 consensus_6585#2 TTGCAAATACTACCTGAAGGTTAGAGCGCTGACCTCGCATATTTATATTGT---GTGTAA 311 consensus_6585#1 TTTCAGACTGACTGGAAACACTGATCTTTGGTGTGTTGTGCAGGGAGAGGAACAGTTTGG 527 * * * * ** * consensus_6585#0 CTTCAGACTAACTGGACTGCTTCTCTGCATGGCACCTCTCTTGTAGAATAATCCAGGATA 1013 consensus_6585#2 CTTCTGTTGAGGCAGGG---------GTATGTGAACCTGACTGAGTAGCAATTGACGATA 362 consensus_6585#1 CTTCAGACTCACTGGACTGCTTCTTTGCATGGCACCTCTCTTGTAGAATAATCCCGGATA 587 **** * * * *** * * ** * *** **** consensus_6585#0 GCTGGTTTCCTGAGGCGAGGTCGGTAGGTCACTTCATCTATGTGATAATGTGAACCCTTC 1073 consensus_6585#2 GCTGTAAACT---GCCAAGCTCA------TACTGTTTGAATAC-ATTATTTGATTCCTTT 412 consensus_6585#1 GCTGGTCTCCTGAGGCGAGGTCGGTAGGTCCCTTTATCTAGGTGATAATGTGAACCCTTC 647 **** * * * ** ** ** * * ** ** *** **** consensus_6585#0 CATATTGCCGCCTGATGAGAACTGAATCTTCTACGGAAGTGATGCTCTACTCTCTACTCT 1133 consensus_6585#2 AA-------GTCCAAAAAAAAAAAA----------------------------------- 430 consensus_6585#1 CATATTGCCGCCTGAAAAAAAAAAAAAAAAAAAAAAGA---------------------- 685 * * * * * ** * consensus_6585#0 GTTTTTTTTTCCTTTTGGTTTCTTTTCCCTAATCTCTTGGACAGTTCAGTTTTGATGGAT 1193 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 ------------------------------------------------------------ consensus_6585#0 TCTTCTGGCCTCGTGTTGATGATCAAAGTATTCAAGTCGTCGTCTCGTGCTGATGGCTGC 1253 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 ------------------------------------------------------------ consensus_6585#0 TTGCTTGATTTTAAACTTCGGCTGAAACTCGGAGCCTCTTTCACATTTGTCCGGTCAGCG 1313 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 ------------------------------------------------------------ consensus_6585#0 ATTGCTTTTCTTCTCTCCCCCGGTTTGCCGCTTGCATGGTAGTGCCTGCCACTAGTAATC 1373 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 ------------------------------------------------------------ consensus_6585#0 TAATAGCATAGGTCTTCTTGTTAACTTCTCTCACATAATAAGTCAAGTAGTAGTACTTCA 1433 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 ------------------------------------------------------------ consensus_6585#0 GTTAAGCAAGATTGATCATGTCAGAAAGCATGCTATTTGAACGTTTTGAAAGGTTGAATC 1493 consensus_6585#2 ------------------------------------------------------------ consensus_6585#1 ------------------------------------------------------------ consensus_6585#0 ACAGGAGCGTGATGCATGCATCTCACTGATGCAGCAGAGAAT 1535 consensus_6585#2 ------------------------------------------ consensus_6585#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||