cluster # 6587

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Oryza sativa
cluster # 6587 cluster # 6587 Sequences # 4 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6587#0 length = 389 sequences # 4

consensusID : consensus_6587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 389
fasta sequence

                              [GCCAGGAAGAGACCAGATAAAAAAGGTAAATCTGCAGACAACAGCTTGCAGAGCTCAGTAATCCCAAGCAGAATGGCGTTAGCCACCATGAGTTACACCATGCTTTTCCTTTCCTTGAGAGCGGAAAAAGGGTGAGAATACCAGAATGCTTTGCCTGCA-TTTTTTCCCAAGAGGTCAAGACT-G-CCGGTAAAAAAAGAGTA-CA-AATTGTATATGTAGTGGA-CGAGTACTAGGACTGGAGGTCATCTACTAGGTGTTGTGACTACATGGTGCTAGTATAAGTTCTGTAT-CCTTGGATGTCTAGGATGACCAGCAATTTGCCACGTTTGGTGTTC-TGACATTTGCTTGTG-CCTTGGACGAATACTGAATAGTACTCTCTCCGTTTCAAAAAA]

[+] EMBL BQ906428             [GCCAGGAAGAGACCAGATAAAAAAGGTAAATCTGCAGACAACAGCTTGCAGAGCTCAGTAATCCCAAGCAGAATGGCGTTAGCCACCATGAGTTACACCATGCTTTTCCTTTCCTTGAGAGCGGAAAAAGGGTGAGAATACCAGAATGCTTTGCCTGCACTTTTTTCCCAAGAGGTCAAGACTNGCCCGGTAAAAAAAGAGTACCACAATTGTATATGTAGTGGACCGAGTACTAGGACTGGAGGTCATCTACTAGGTNTTGTGACTACATGGTGCTAGTATAAGTTCTGTATCCCTTGGATGTCTAGGATGACCAGCAAGTTGCCACGTTTGGTGCTCNCGACATTTGCTTGTGCCCTTGGACGAATACTGAAaaa                     ]
[+] EMBL AK058866             [                               CTGCAGACAACAGCTTGCAGAGCTCAGTAATCCCAAGCAGAATGGCGTTAGCCA CATGAGTTACA CATGCTTTTCCTTT CTTGAGAGCGGAAAAAGGGAGAGAATA CAGAATGCTTTGCCTGCA TTTTTTCCCAAGAGGTCAAGACT G CCGGTAAAAAAAGAGTA CA AATTGTATATGTAGTGGA CGAGTACTAGGACTGGAGGTCATCTACTAGGTGTTGTGACTACATGGTGCTAGTATAAGTTCTGTAT CCTTGGATGTCTAGGATGACCAGCAATTTGCCACGTTTGATGTTC TGACATTTGCTTGTG CCTTGGACGAATACTGATTAGTACTC                ]
[-] EMBL CF309907             [                                                                                                                                             CAGAATGCTTTGCCTGCA TTTTTTCCCAAGAGGTCAAGACT G CCGGTAAAAAAAGAGTA CA AATTGTATATGTAGTGGA CGAGTACTAGGACTGGAGGTCATCTACTAGGTGTTGTGACTACATGGTGCTAGTATAAGTTCTGTAT CCTTGGATGTCTAGGATGACCAGCAATTTGCCACGTTTGGTGTTC TGACATTTGCTTGTG CCTTGGACGAATACTGAATAGTACTCTCTCCGTTTCAAAAAA]
[+] EMBL CF309908             [                                                                                                                                            aCAGAATGCTTTGCCTGCA TTTTTTCCCAAGAGGTCAAGACT G CCGGTAAAAAAAGAGTA CA AATTGTATATGTAGTGGA CGAGTACTAGGACTGGAGGTCATCTACTAGGTGTTGTGACTACATGGTGCTAGTATAAGTTCTGTAT CCTTGGATGTCTAGGATGACCAGCAATTTGCCACGTTTGGTGTTC TGACATTTGCTTGTG CCTTGGACGAATACTGAATAGTACTCTCTCCGTTTCAAAAA ]




>consensus_6587#0
GCCAGGAAGAGACCAGATAAAAAAGGTAAATCTGCAGACAACAGCTTGCAGAGCTCAGTA
ATCCCAAGCAGAATGGCGTTAGCCACCATGAGTTACACCATGCTTTTCCTTTCCTTGAGA
GCGGAAAAAGGGTGAGAATACCAGAATGCTTTGCCTGCATTTTTTCCCAAGAGGTCAAGA
CTGCCGGTAAAAAAAGAGTACAAATTGTATATGTAGTGGACGAGTACTAGGACTGGAGGT
CATCTACTAGGTGTTGTGACTACATGGTGCTAGTATAAGTTCTGTATCCTTGGATGTCTA
GGATGACCAGCAATTTGCCACGTTTGGTGTTCTGACATTTGCTTGTGCCTTGGACGAATA
CTGAATAGTACTCTCTCCGTTTCAAAAAA

clustalw multiple alignements is not computed in this case