These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6589#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 545 fasta sequence [CTTCGCCGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAATGAAGCGGCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGGTGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGAGCCGGCGATGTGGCGGCGGCGGCGGGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTTATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAATTTCTTTTTTTTTTTGGCTGC-ATGCTC-TTCTT-CTGCA-TTTCTT-CTT-GGATTTGTGTTGTCTGATTT-ATTAGGTGTTTTCA--TGAG-CTCAATTATTGCTTGGTCTCTAGCTCCTGTGAATTGTGAATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAGCTTCTTGTCTTCAGAATGTATGGATGTGTTTATTATTTCAGAATCCATGTCAAGGTGCCGCTCAAATCTAAGCTATTGAAA] [+] EMBL AK103330 [CTTCGCCGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAATGAAGCGGCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGGTGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGAGCCGGCGATGTGGCGGCGGCGGCGGGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTTATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAATTTCTTTTTTTTTTTGGCTGC ATGCTC TTCTT CTGCA TTTCTT CTT GGATTTGTGTTGTCTGATTT ATTAGGTGTTTTCA TGAG CTCAATTATTGCTTGGTCTCTAGCTCCTGTGAATTGTGAATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAGCTTCTTGTCTTCAGAATGTATGGATGTGTTTATTATTTCAGAATCCATGTCAAGGTGCCGCTCAAATCTAAGCTATTGAAA] [+] EMBL AU161830 [ GGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAATGAAGCGGCGGNCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGGTGGCCGTNGTATCGAGGTGGTCGTGGAGTCGTCGGAGCCGGCGATGTGGCGGCGGCGGCGGGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTTATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAATTTCTTTTTTTTTTTNGCTGCAATGCTCNTTCTTCCTGCANTTTCTTCCTTGGGATTTGTGTTGNCTGATTTAATAAGGTGTTTTCAANTGAGCCTCAAat ] [+] EMBL AU176551 [ GTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAATGAAGCGGCGGCCTCGGTGACNAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGGTGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGAGCCGGCGATGTGGCGGCGGCGGCGGGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTTATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAATTTCTTTTTTTTTTTGGCTGC ATGCTC TTCTT CTGCA TTTCTT CTT GGATTTGTGTTGTCTGATTT ATTAGGTGTTTTCA TGAG CTCAATTATTGCTTGGTCTCTAGCTCCTGTGAATTGTGAATTaaaaa ] consensusID : consensus_6589#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [CGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAATGAAGCGGCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGGTGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGACCGGCGATGTGGCGGCGGCGGCGGGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTTATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAATTTCTTTTTTTTTTTTTTTGGCTGCATGCTCTTCTTCTGCATTTCTTCTTGGATTTGTGTTGTCTGATTTATTAGGTGTTTTCATGAGCTCAATTATTGCTTGGTCTCTAGCTCCTGTGAATTGTGAATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAAAAAAAAAAAAAAAAAA] [+] EMBL AU091361 [CGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAATGAAGCGGCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGGTGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGACCGGCGATGTGGCGGCGGCGGCGGGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTTATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAATTTCTTTTTTTTTTTTTTTGGCTGCATGCTCTTCTTCTGCATTTCTTCTTGGATTTGTGTTGTCTGATTTATTAGGTGTTTTCATGAGCTCAATTATTGCTTGGTCTCTAGCTCCTGTGAATTGTGAATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6589#0 CTTCGCCGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAAT 60 consensus_6589#1 ------CGCTCCCGGAAGGGATGGTATGGGAGAAGCAGCGCCGGAGAAGATGGAAGGAAT 54 ****************************************************** consensus_6589#0 GAAGCGGCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGG 120 consensus_6589#1 GAAGCGGCGGCCTCGGTGACGAGGTGGTGGCGGCGGCGGCTGGTGCGTCGGCGGCCGTGG 114 ************************************************************ consensus_6589#0 TGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGAGCCGGCGATGTGGCGGCGGCGGCG 180 consensus_6589#1 TGGCCGTGGTATCGAGGTGGTCGTGGAGTCGTCGGA-CCGGCGATGTGGCGGCGGCGGCG 173 ************************************ *********************** consensus_6589#0 GGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTT 240 consensus_6589#1 GGGGCTTTGGCGGCTGCAGCGGTGAGGGCACGACGCCGTGAGCTTGTTTGTTGCCGCCTT 233 ************************************************************ consensus_6589#0 ATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAA 300 consensus_6589#1 ATTCTGCATCGATGGCCTCTGTATTCATCGTTAGCTTATGTTAGTTGCAGCAGTAGAAAA 293 ************************************************************ consensus_6589#0 TTTCTTTTTTTTTTT----GGCTGCATGCTCTTCTTCTGCATTTCTTCTTGGATTTGTGT 356 consensus_6589#1 TTTCTTTTTTTTTTTTTTTGGCTGCATGCTCTTCTTCTGCATTTCTTCTTGGATTTGTGT 353 *************** ***************************************** consensus_6589#0 TGTCTGATTTATTAGGTGTTTTCATGAGCTCAATTATTGCTTGGTCTCTAGCTCCTGTGA 416 consensus_6589#1 TGTCTGATTTATTAGGTGTTTTCATGAGCTCAATTATTGCTTGGTCTCTAGCTCCTGTGA 413 ************************************************************ consensus_6589#0 ATTGTGAATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAGCTTCTTGTCTTC 476 consensus_6589#1 ATTGTGAATTTATGCGTGGTGTTCGTGTAAAAGGCATCTTTAAGCTAAAAAAAAAAAAAA 473 *********************************************** consensus_6589#0 AGAATGTATGGATGTGTTTATTATTTCAGAATCCATGTCAAGGTGCCGCTCAAATCTAAG 536 consensus_6589#1 AAAA-------------------------------------------------------- 477 * ** consensus_6589#0 CTATTGAAA 545 consensus_6589#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||