cluster # 6593

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Oryza sativa
cluster # 6593 cluster # 6593 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6593#0 length = 851 sequences # 3

consensus_6593#1 length = 446 sequences # 1

consensusID : consensus_6593#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 851
fasta sequence

                              [TCCCAATTGCCGCTGCGTCCTTCGCCTCGCCTCGCACCCAAAACCCTAGCGCCGCCCGCTCGTCGGAGGTGAAGAGGCGGCGGCGGCGGCGGCAGCGTCGACAATGGTGTGGTTCCAGTGCGAGGACTGCGGGGACGACCTCAAGAAGCCCAAGCTCGCCGGCCACTTCCGCTCCTGCTCCGCCTACAGGCTCTCCTGCATCGACTGCGGCGAGTTCTTCACCCAGGAGACCGTCCAGGGCCACACCCAGTGCATCTCCGAGGCTGAGAAGTATGGTCCCAAGGGACAGAACAAAGCATCCAACAATGCACAGGGCAAGCAAGACAAGCCAAAGCCAAATGCTGATGTTGATATCAATGTCGGGCTGTCGACATATCCCCCTTGGTTCTGCAGCCTTTGCAAGACGACAACCACTAGCAAGCAAACACTCTTATCACATGCAGATGGCAAGAAGCACAGGGCAAAAGCAAAAGCCTATCATGCTTCTCAGAAGCAAGCAAATGGAGTTGAACAAACTCCCAAGGAAACTGTTGGTGCACCTGTGACAGAATCAGCACAAGTAAACAATGAGAGGAGTACTGAAAATGAAAGAGGTGTGGACAACGATGCAGCAAAGAGAAAGAGAGCAAATGATACGACCTCAGAAGAGCCAGATAACACGAAAAGACAGAACAACTTGAGCGTGAACAGTGGAGAAGTGGTACAATCTTCAAATGAAGAGGCAGAAACCAAAGCAAAGAGCAAGGGTACTAAAGATGAATTAGTTAGTAGTGCCAACCTTAAAGGCAGTAAAAAGCAGAAAATCAAGTGGAAGAAAATTATTACCAAAGTATTAAACAATCCAGATGAGT]

[+] EMBL AK059387             [TCCCAATTGCCGCTGCGTCCTTCGCCTCGCCTCGCACCCAAAACCCTAGCGCCGCCCGCTCGTCGGAGGTGAAGAGGCGGCGGCGGCGGCGGCAGCGTCGACAATGGTGTGGTTCCAGTGCGAGGACTGCGGGGACGACCTCAAGAAGCCCAAGCTCGCCGGCCACTTCCGCTCCTGCTCCGCCTACAGGCTCTCCTGCATCGACTGCGGCGAGTTCTTCACCCAGGAGACCGTCCAGGGCCACACCCAGTGCATCTCCGAGGCTGAGAAGTATGGTCCCAAGGGACAGGACAAAGCATCCAACAATGCACAGGGCAAGCAAGACAAGCCAAAGCCAAATGCTGATGTTGATATCAATGTCGGGCTGTCGACATATCCCCCTTGGTTCTGCAGCCTTTGCAAGACGACAACCACTAGCAAGCAAACACTCTTATCACATGCAGATGGCAAGAAGCACAGGGCAAAAGCAAAAGCCTATCATGCTTCTCAGAAGCAAGCAAATGGAGTTGAACAAACTCCCAAGGAAACTGTTGGTGCACCTGTGACAGAATCAGCACAAGTAAACAATGAGAGGAGTACTGAAAATGAAAGAGGTGTGGACAACGATGCAGCAAAGAGAAAGAGAGCAAATGATACGACCTCAGAAGAGCCAGATAACACGAAAAGACAGAACAACTTGAGCGTGAACAGTGGAGAAGTGGTACAATCTTCAAATGAAGAGGCAGAAACCAAAGCAAAGAGCAAGGGTACTAAAGATGAATTAGTTAGTAGTGCCAACCTTAAAGGCAGTAAAAAGCAGAAAATCAAGTGGAAGAAAATTATTACCAAAGTA                   ]
[+] EMBL AK103402             [                                        AAACCCTAGCGCCGCCCGCTCGTCGGAGGTGAAGAGGCGGCGGCGGCGGCGGCAGCGTCGACAATGGTGTGGTTCCAGTGCGAGGACTGCGGGGACGACCTCAAGAAGCCCAAGCTCGCCGGCCACTTCCGCTCCTGCTCCGCCTACAGGCTCTCCTGCATCGACTGCGGCGAGTTCTTCACCCAGGAGACCGTCCAGGGCCACACCCAGTGCATCTCCGAGGCTGAGAAGTATGGTCCCAAGGGACAGAACAAAGCATCCAACAATGCACAGGGCAAGCAAGACAAGCCAAAGCCAAATGCTGATGTTGATATCAATGTCGGGCTGTCGACATATCCCCCTTGGTTCTGCAGCCTTTGCAAGACGACAACCACTAGCAAGCAAACACTCTTATCACATGCAGATGGCAAGAAGCACAGGGCAAAAGCAAAAGCCTATCATGCTTCTCAGAAGCAAGCAAATGGAGTTGAACAAACTCCCAAGGAAACTGTTGGTGCACCTGTGACAGAATCAGCACAAGTAAACAATGAGAGGAGTACTGAAAATGAAAGAGGTGTGGACAACGATGCAGCAAAGAGAAAGAGAGCAAATGATACGACCTCAGAAGAGCCAGATAACACGAAAAGACAGAACAACTTGAGCGTGAACAGTGGAGAAGTGGTACAATCTTCAAATGAAGAGGCAGAAACCAAAGCAAAGAGCAAGGGTACTAAAGATGAATTAGTTAGTAGTGCCAACCTTAAAGGCAGTAAAAAGCAGAAAATCAAGTGGAAGAAAATTATTACCAAAGTA                   ]
[+] EMBL BE040997             [                                                          CTCGTCGGAGGTGAAGAGGCGGCGGCGGCGGCGGCAGCGTCGACAATGGTGTGGTTCCAGTGCGAGGACTGCGGCGACGACCTCAAGAAGCCCAAGCTCGCCGGCCACTTCCGCTCCTGCTCCGCCTACAGGCTCTCCTGCATCGACTGCGGCGAGTTCTTCACCCAGGAGACCGTCCAGGGCCACACCCAGTGCATCTCCGAGGCTGAGAAGTATGGTCCCAAGGGACAGAACAAAGCATCCAACAATGCACAGGGCAAGCAAGACAAGCCAAAGCCAAATGCTGATGTTGATATCAATGTCGGGCTGTCGACATATCCCCCTTGGTTCTGCAGCCTTTGCAAGACGACAACCACTAGCAAGCAAACACTCTTATCACATGCAGATGGCAAGAAGCACAGGGCAAAAGCAAAAGCCTATCATGCTTCTCAGAAGCAAGCAAATGGAGTTGAACAAACTCCCAAGGAAACTGTTGGTGCACCTGTGACAGAATCAGCACAAGTAAACAATGAGAGGAGTACTGAAAATGAAAGAGGTGTGGACAACGATGCAGCAAAGAGAAAGAGAGCAAATGATACGACCTCAGAAGAGCCAGATAACACGAAAAGACCGAACACCTTGAGCGTGAACAGTGGAGAAGTGGTACAATCTTC AATGGAGAGGCAGAAACC AAGCAAAGAGCAA GGTACT AAGATGAA TAGTTAGTAGTGCC ACCTT AAGGCAG GAAAAGCAG AAATCAAG GGAAG AAATTATTACCCAAGACTTAAACAATCCAGATGAGT]




>consensus_6593#0
TCCCAATTGCCGCTGCGTCCTTCGCCTCGCCTCGCACCCAAAACCCTAGCGCCGCCCGCT
CGTCGGAGGTGAAGAGGCGGCGGCGGCGGCGGCAGCGTCGACAATGGTGTGGTTCCAGTG
CGAGGACTGCGGGGACGACCTCAAGAAGCCCAAGCTCGCCGGCCACTTCCGCTCCTGCTC
CGCCTACAGGCTCTCCTGCATCGACTGCGGCGAGTTCTTCACCCAGGAGACCGTCCAGGG
CCACACCCAGTGCATCTCCGAGGCTGAGAAGTATGGTCCCAAGGGACAGAACAAAGCATC
CAACAATGCACAGGGCAAGCAAGACAAGCCAAAGCCAAATGCTGATGTTGATATCAATGT
CGGGCTGTCGACATATCCCCCTTGGTTCTGCAGCCTTTGCAAGACGACAACCACTAGCAA
GCAAACACTCTTATCACATGCAGATGGCAAGAAGCACAGGGCAAAAGCAAAAGCCTATCA
TGCTTCTCAGAAGCAAGCAAATGGAGTTGAACAAACTCCCAAGGAAACTGTTGGTGCACC
TGTGACAGAATCAGCACAAGTAAACAATGAGAGGAGTACTGAAAATGAAAGAGGTGTGGA
CAACGATGCAGCAAAGAGAAAGAGAGCAAATGATACGACCTCAGAAGAGCCAGATAACAC
GAAAAGACAGAACAACTTGAGCGTGAACAGTGGAGAAGTGGTACAATCTTCAAATGAAGA
GGCAGAAACCAAAGCAAAGAGCAAGGGTACTAAAGATGAATTAGTTAGTAGTGCCAACCT
TAAAGGCAGTAAAAAGCAGAAAATCAAGTGGAAGAAAATTATTACCAAAGTATTAAACAA
TCCAGATGAGT

consensusID : consensus_6593#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [GCAGCCTTTGCAAGACGACAACCACTAGCAAGCAAACACTCTTATCACATGCAGATGGCAAGAAGCACAGGGCAAAAGCAAAAGCCTATCATGCTTCTCAGAAGCAAGCAAATGGAGTTGAACAAACTCCCAAGGAAACTGTTGGTGCACCTGTGACAGANTCAGCACAAGTANACAATGAGAGGAGTACTGAAAATGAAAGAGGTGTGGACAACGATGCAGCAAAGAGAAAGAGAGCAAATGATACGACCTCAGAAGAGCCAGATAACACGNAAAGACAGGACACTTGAGCGTGAACAGTGGAGAAGTGGTACAATCTTCAAATGAGGGGGCAGAAACCAAGCAANGGGCAGGGTACTAAAGNTGATTAGTTAGTGGTGCCACCTTNAAGGCAGTAAAGCNGAAATCAGTGGAGGAATTTTTTACCAGTCTTTAGCGNTTCCGTG]

[+] EMBL C28761               [GCAGCCTTTGCAAGACGACAACCACTAGCAAGCAAACACTCTTATCACATGCAGATGGCAAGAAGCACAGGGCAAAAGCAAAAGCCTATCATGCTTCTCAGAAGCAAGCAAATGGAGTTGAACAAACTCCCAAGGAAACTGTTGGTGCACCTGTGACAGANTCAGCACAAGTANACAATGAGAGGAGTACTGAAAATGAAAGAGGTGTGGACAACGATGCAGCAAAGAGAAAGAGAGCAAATGATACGACCTCAGAAGAGCCAGATAACACGNAAAGACAGGACACTTGAGCGTGAACAGTGGAGAAGTGGTACAATCTTCAAATGAGGGGGCAGAAACCAAGCAANGGGCAGGGTACTAAAGNTGATTAGTTAGTGGTGCCACCTTNAAGGCAGTAAAGCNGAAATCAGTGGAGGAATTTTTTACCAGTCTTTAGCGNTTCCGTG]




>consensus_6593#1
GCAGCCTTTGCAAGACGACAACCACTAGCAAGCAAACACTCTTATCACATGCAGATGGCA
AGAAGCACAGGGCAAAAGCAAAAGCCTATCATGCTTCTCAGAAGCAAGCAAATGGAGTTG
AACAAACTCCCAAGGAAACTGTTGGTGCACCTGTGACAGANTCAGCACAAGTANACAATG
AGAGGAGTACTGAAAATGAAAGAGGTGTGGACAACGATGCAGCAAAGAGAAAGAGAGCAA
ATGATACGACCTCAGAAGAGCCAGATAACACGNAAAGACAGGACACTTGAGCGTGAACAG
TGGAGAAGTGGTACAATCTTCAAATGAGGGGGCAGAAACCAAGCAANGGGCAGGGTACTA
AAGNTGATTAGTTAGTGGTGCCACCTTNAAGGCAGTAAAGCNGAAATCAGTGGAGGAATT
TTTTACCAGTCTTTAGCGNTTCCGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6593#0      TCCCAATTGCCGCTGCGTCCTTCGCCTCGCCTCGCACCCAAAACCCTAGCGCCGCCCGCT 60
consensus_6593#1      ------------------------------------------------------------
                                                                                  

consensus_6593#0      CGTCGGAGGTGAAGAGGCGGCGGCGGCGGCGGCAGCGTCGACAATGGTGTGGTTCCAGTG 120
consensus_6593#1      ------------------------------------------------------------
                                                                                  

consensus_6593#0      CGAGGACTGCGGGGACGACCTCAAGAAGCCCAAGCTCGCCGGCCACTTCCGCTCCTGCTC 180
consensus_6593#1      ------------------------------------------------------------
                                                                                  

consensus_6593#0      CGCCTACAGGCTCTCCTGCATCGACTGCGGCGAGTTCTTCACCCAGGAGACCGTCCAGGG 240
consensus_6593#1      ------------------------------------------------------------
                                                                                  

consensus_6593#0      CCACACCCAGTGCATCTCCGAGGCTGAGAAGTATGGTCCCAAGGGACAGAACAAAGCATC 300
consensus_6593#1      ------------------------------------------------------------
                                                                                  

consensus_6593#0      CAACAATGCACAGGGCAAGCAAGACAAGCCAAAGCCAAATGCTGATGTTGATATCAATGT 360
consensus_6593#1      ------------------------------------------------------------
                                                                                  

consensus_6593#0      CGGGCTGTCGACATATCCCCCTTGGTTCTGCAGCCTTTGCAAGACGACAACCACTAGCAA 420
consensus_6593#1      -----------------------------GCAGCCTTTGCAAGACGACAACCACTAGCAA 31
                                                   *******************************

consensus_6593#0      GCAAACACTCTTATCACATGCAGATGGCAAGAAGCACAGGGCAAAAGCAAAAGCCTATCA 480
consensus_6593#1      GCAAACACTCTTATCACATGCAGATGGCAAGAAGCACAGGGCAAAAGCAAAAGCCTATCA 91
                      ************************************************************

consensus_6593#0      TGCTTCTCAGAAGCAAGCAAATGGAGTTGAACAAACTCCCAAGGAAACTGTTGGTGCACC 540
consensus_6593#1      TGCTTCTCAGAAGCAAGCAAATGGAGTTGAACAAACTCCCAAGGAAACTGTTGGTGCACC 151
                      ************************************************************

consensus_6593#0      TGTGACAGAATCAGCACAAGTAAACAATGAGAGGAGTACTGAAAATGAAAGAGGTGTGGA 600
consensus_6593#1      TGTGACAGANTCAGCACAAGTANACAATGAGAGGAGTACTGAAAATGAAAGAGGTGTGGA 211
                      ********* ************ *************************************

consensus_6593#0      CAACGATGCAGCAAAGAGAAAGAGAGCAAATGATACGACCTCAGAAGAGCCAGATAACAC 660
consensus_6593#1      CAACGATGCAGCAAAGAGAAAGAGAGCAAATGATACGACCTCAGAAGAGCCAGATAACAC 271
                      ************************************************************

consensus_6593#0      GAAAAGACAGAACAACTTGAGCGTGAACAGTGGAGAAGTGGTACAATCTTCAAATGAAGA 720
consensus_6593#1      GNAAAGACAGGACA-CTTGAGCGTGAACAGTGGAGAAGTGGTACAATCTTCAAATGAGGG 330
                      * ******** *** ****************************************** * 

consensus_6593#0      GGCAGAAACCAAAGCAAAGAGCAAGGGTACTAAAGATGAATTAGTTAGTAGTGCCAACCT 780
consensus_6593#1      GGCAGAAACCAA-GCAANGGGCA-GGGTACTAAAGNTGA-TTAGTTAGTGGTGCCA-CCT 386
                      ************ **** * *** *********** *** ********* ****** ***

consensus_6593#0      TAAAGGCAGTAAAAAGCAGAAAATCAAGTGGAAGAAAATTATTACCAAAGTATTAAACAA 840
consensus_6593#1      TNAAGGCAGTAAA--GCNGAAATC--AGTGGAGGAATTTT-TTACCA--GTCTTTAGCGN 439
                      * ***********  ** ****    ****** ***  ** ******  ** ** * *  

consensus_6593#0      TCCAGATGAGT 851
consensus_6593#1      TTCCG-TG--- 446
                      * * * **