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Oryza sativa
cluster # 6599 cluster # 6599       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6599#0 length = 830 sequences # 3  
consensus_6599#1 length = 691 sequences # 1  

consensusID : consensus_6599#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 830
fasta sequence
                              [GCTAAGAATTTCGCATTGAGGTAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGGAAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGGCAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCCAACTAGAACTGCAAACCATGCCAATGTATCCCATGCAGATTTCTCATTTAAGCAATCATCCCAGTCTAGCACACCTAGCAAGAGAAGAATAGAGAGTCCAAGCATCGCGGCAACAACACTAGATACACCGATAGCATCCCCAAATACCCATAATGAAACTGCAAGGAGCATT]

[+] EMBL CB622565             [GCTAAGAATTTCGCATTGAGGTAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGGAAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGGCAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCCAACTAGAACTGCAAACCATGCCAATGTATCCCATGCAGATTTCTCATTTAAGCAATCATCCCAGTCTAGCACACCTAGCAAGAGAAGAATAGAGAGTCCAAGCATCGCGGCAACAACACTAGATACACCGATAGCATCCCCAAATACCCATAATGAAACTGCAAGGAGCATT]
[-] EMBL AU173398             [            tttTTGAGGTAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACAC                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL AK059359             [                     TAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATC                                                                                                                                                                                                                                                                                                            ]


>consensus_6599#0 GCTAAGAATTTCGCATTGAGGTAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTC CCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAG GAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCC GAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGA GCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGG CTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACA CTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCA AAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCG AGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGG AAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGG CAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCCAA CTAGAACTGCAAACCATGCCAATGTATCCCATGCAGATTTCTCATTTAAGCAATCATCCC AGTCTAGCACACCTAGCAAGAGAAGAATAGAGAGTCCAAGCATCGCGGCAACAACACTAG ATACACCGATAGCATCCCCAAATACCCATAATGAAACTGCAAGGAGCATT



consensusID : consensus_6599#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence
                              [TTTTTTTTTTTTTTGAGGAAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGGGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGGAAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGGCAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCAACTAGAACTGCAACCATGCCAATGTATCCCATGCAG]

[+] EMBL CA759551             [TTTTTTTTTTTTTTGAGGAAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTGCAGCCTGTCCGCTACTATAATGGGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGGAAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGGCAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCAACTAGAACTGCAACCATGCCAATGTATCCCATGCAG]


>consensus_6599#1 TTTTTTTTTTTTTTGAGGAAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTCCCT AATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAGGAA CAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCCGAA TTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGAGCC CCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGGCTG TTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACACTG CAGCCTGTCCGCTACTATAATGGGTTAGTGCACCAAACAGATTTGTGTTGAATGCCAAAG CAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCGAGT ATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGGAAG CCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGGCAA CACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCAACTAG AACTGCAACCATGCCAATGTATCCCATGCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6599#0      GCTAAGAATTTCGCATTGAGGTAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTC 60
consensus_6599#1      ---TTTTTTTTTTTTTTGAGGAAATCAGATTGACCTGATTTTCCATTACTCTCTTAGTTC 57
                              ***    ****** **************************************

consensus_6599#0      CCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAG 120
consensus_6599#1      CCTAATTTACATTTACTATACAGCTGAGCTAACCGAGCGGCCGAGCTGATCATTTTGAAG 117
                      ************************************************************

consensus_6599#0      GAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCC 180
consensus_6599#1      GAACAAAGTTATTCTGTTATTGAACTCTCATCGACAGGCCACAAAAGAAACATCCCTTCC 177
                      ************************************************************

consensus_6599#0      GAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGA 240
consensus_6599#1      GAATTCAGTGAGCTCCAATGGAAAACTTTGGTCAATTTACAGGCAGCCGCTATCAATAGA 237
                      ************************************************************

consensus_6599#0      GCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGG 300
consensus_6599#1      GCCCCAAAAGTTTCCACCAGAAGGTTCCAACAACACCCCAGATCAGAATATTGATCAAGG 297
                      ************************************************************

consensus_6599#0      CTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACA 360
consensus_6599#1      CTGTTACGAAACCCATCCTGAATACATCTGGAAGCTCAAGATACCCCGCTCCAAAGTACA 357
                      ************************************************************

consensus_6599#0      CTGCAGCCTGTCCGCTACTATAATGAGTTAGTGCACCAAACAGATTTGTGTTGAATGCCA 420
consensus_6599#1      CTGCAGCCTGTCCGCTACTATAATGGGTTAGTGCACCAAACAGATTTGTGTTGAATGCCA 417
                      ************************* **********************************

consensus_6599#0      AAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCG 480
consensus_6599#1      AAGCAAGAGCTGACAGCACTCGAGGAACACCAGCTGCTACATGCATGGCCAGAAATGCCG 477
                      ************************************************************

consensus_6599#0      AGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGG 540
consensus_6599#1      AGTATAAAGCTCCAACATGTCCGGTTTGGCTTGCAAATAGATAGTGAATCAGGAAGTAGG 537
                      ************************************************************

consensus_6599#0      AAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGG 600
consensus_6599#1      AAGCCTCAAGAACACAAAAGGCTGCAGGCCAGCTCAGCGAGAAGGATTCAAGCAGCTTGG 597
                      ************************************************************

consensus_6599#0      CAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTCCAA 660
consensus_6599#1      CAACACAGCTTGACATCCATGACACAATTCCCAGGTTAGTGAGCTGTCCTGCCATTC-AA 656
                      ********************************************************* **

consensus_6599#0      CTAGAACTGCAAACCATGCCAATGTATCCCATGCAGATTTCTCATTTAAGCAATCATCCC 720
consensus_6599#1      CTAGAACTGCAA-CCATGCCAATGTATCCCATGCAG------------------------ 691
                      ************ ***********************                        

consensus_6599#0      AGTCTAGCACACCTAGCAAGAGAAGAATAGAGAGTCCAAGCATCGCGGCAACAACACTAG 780
consensus_6599#1      ------------------------------------------------------------
                                                                                  

consensus_6599#0      ATACACCGATAGCATCCCCAAATACCCATAATGAAACTGCAAGGAGCATT 830
consensus_6599#1      --------------------------------------------------
                                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)