These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6604#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 934 fasta sequence [ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACCTGGATGCAGGACGTGCAATTTCCTTCGCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGCCGCTGCCCACACCACCCCTGCCGGCTCGACCGTCTACAGCACCGNCTACGAGACCGTCAACTCGTGCGCCCNCACTTGTCACCAACTGCCCGGGCTCGTCGACCGTCGTCAGCTTCAGCATCGNCACCCTTGACGCCTTGACCCGGTACACCAACTTGGTCCAGAACAATAACTNGTGCGCTCCAACCGTACCAATGGCCCCGGGAGGCTTAGTGTGACCAAACAATCCGTGTCAACACCTCTTGCCGGAACGGAACATAGACCCGGACAGGCCGCCGTGTCTTTCCCTGAGGACGACCGGTCCTGTGAACACCGGGAGCTTTCCCTGGGGCCTATAATGTGTTTCAATCCCGCGGCTCCTCCACCGTAGAAATATATTTATCTGTGTTAACTATTATATAAAAACAATCACCCGCGGCGTCACCGTCTGGTGGTAATATTCTTTANTNNAAAAACCAAATGAGGAAAACGTCTGGTCCCTGTCGCTGTGTGTGTTTTTTCTCTCCCGCAACACGCAT] [+] EMBL AW155547 [ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACCTGGATGCAGGACGTGCAATTTCCTTCGCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGCCGCTGCCCACACCACCCCTGCCGGCTCGACCGTCTACAGCACCGNCTACGAGACCGTCAACTCGTGCGCCCNCACTTGTCACCAACTGCCCGGGCTCGTCGACCGTCGTCAGCTTCAGCATCGNCACCCTTGACGCCTTGACCCGGTACACCAACTTGGTCCAGAACAATAACTNGTGCGCTCCAACCGTACCAATGGCCCCGGGAGGCTTAGTGTGACCAAACAATCCGTGTCAACACCTCTTGCCGGAACGGAACATAGACCCGGACAGGCCGCCGTGTCTTTCCCTGAGGACGACCGGTCCTGTGAACACCGGGAGCTTTCCCTGGGGCCTATAATGTGTTTCAATCCCGCGGCTCCTCCACCGTAGAAATATATTTATCTGTGTTAACTATTATATAAAAACAATCACCCGCGGCGTCACCGTCTGGTGGTAATATTCTTTANTNNAAAAACCAAATGAGGAAAACGTCTGGTCCCTGTCGCTGTGTGTGTTTTTTCTCTCCCGCAACACGCAT] consensusID : consensus_6604#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 920 fasta sequence [ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACCTGGATGCAGGACGTGCAATTTCCTTGGCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGCCGCTGCCCACACCACCCCTGCCGGCTCGACCGTCTACAGCACCGCCTACGAGACCGTCACCTCGTGCGCCCNCACTGTCACCAACTGCCGGCCTCGTCGACCGTCGCAGGCTCAGCATCNGCACCCTTGACGCCTCGACCGCTACACCANCTCGTNCAGACCATTNACTCGTGCGCTTCCACGTNACCACTGCCCGGCAGGCCTACGTGTGACCAACACTTCTCGCTCAACACCTTTGCCGTGACGAACANAACACGGAACGCACGCGGTTCCTCACTGAAGACGGCCCGTTCCGGGAGCCACCGGAGACTTCTCCTGCGCCCTACATGGTTACCAGTCCCGGTCTGCTACAGCGTTGACATATTAGTGCTTTGGTCTCCGTTTAACACAATCCTCCAGGGCGCCTCGGGTCCCGAAGAGTCTCCAACCAACGACTTGTGCCCCAACCCACACGGCGCACCTCCGCTTCCTCTTGGTTTTTTTTCCACCCCACCGTGTGGTGTG] [+] EMBL AW155546 [ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACCTGGATGCAGGACGTGCAATTTCCTTGGCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGCCGCTGCCCACACCACCCCTGCCGGCTCGACCGTCTACAGCACCGCCTACGAGACCGTCACCTCGTGCGCCCNCACTGTCACCAACTGCCGGCCTCGTCGACCGTCGCAGGCTCAGCATCNGCACCCTTGACGCCTCGACCGCTACACCANCTCGTNCAGACCATTNACTCGTGCGCTTCCACGTNACCACTGCCCGGCAGGCCTACGTGTGACCAACACTTCTCGCTCAACACCTTTGCCGTGACGAACANAACACGGAACGCACGCGGTTCCTCACTGAAGACGGCCCGTTCCGGGAGCCACCGGAGACTTCTCCTGCGCCCTACATGGTTACCAGTCCCGGTCTGCTACAGCGTTGACATATTAGTGCTTTGGTCTCCGTTTAACACAATCCTCCAGGGCGCCTCGGGTCCCGAAGAGTCTCCAACCAACGACTTGTGCCCCAACCCACACGGCGCACCTCCGCTTCCTCTTGGTTTTTTTTCCACCCCACCGTGTGGTGTG] consensusID : consensus_6604#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence [ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACGTGGATGCAGGACGTGCAATTTCCTTCCCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGNNCGGTG-CCACACCAACCCTTGCCGGGTTGAACGGTTATAAGAACGGCTATCAAAAACCGTAACCTGTTGCGCCCCCACTTGT-ACCAACTGCCCGGCCTCGTGGACCGTCGTNAGCTTCAGCATTGCCACCCTGACGCCCTCGACCGTCTACACCACCTCGGTCCAGACCATCACCTNGTGCGCTCCCACCGTCACCAACTGCCCCGGCAAGCCCTACGTNGTGACCCAGACCATACCCGTCTTCACCACCCTCTGCCCGGTGACCGAGACCAAGAG] [+] EMBL AW155374 [ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACGTGGATGCAGGACGTGCAATTTCCTTCCCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGNNCGGTG CCACACCAACCCTTGCCGGGTTGAACGGTTATAAGAACGGCTATCAAAAACCGTAACCTGTTGCGCCCCCACTTGT ACCAACTGCCCGGCCTCGTGGACCGTCGTNAGCTTCAGCATTGCCACCCTGACGCCCTCGACCGTCTACACCACCTCGGTCCAGACCATCACCTNGTGCGCTCCCACCGTCACCAACTGCCCCGGCAAGCCCTACGTNGTGACCCAGACCATACCCGTCTTCACCACCCTCTGCCCGGTGACCGAGACCAAGAG] [+] EMBL AW155372 [ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACGTGGATGCAGGACGTGCAATTTCCTTCCCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACAGAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATGAACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTATCTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGCTTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCCTTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTG NCGNTGNCCACACCAACCC TGGCGGCTCGAACGGTTACAGGAACGGCT TACAAAACGTTAACTTGTGGCGCCCCCA TTGTAACCAACTGCCCGGCCTCGTCAACCGTCGT CGGTTCAACATTTGCACCCTGACGCCCTCGACCGTTTACACCACCTCGGTCC GACCATAACC NGTGCGCT CCACCGT NCCAACTTGCCCGG AAG CCTACGT GTGACCCA AACAT CCCGT TCCA CAACCTCTGGCC GTGACC AGACCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6604#0 ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACCTGGATGCAGGACGTGCAATTTC 60 consensus_6604#2 ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACGTGGATGCAGGACGTGCAATTTC 60 consensus_6604#1 ACCCTGTTCAGCGGAGCACCCCTGGATTGGCGTCCACCTGGATGCAGGACGTGCAATTTC 60 ************************************* ********************** consensus_6604#0 CTTCGCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACA 120 consensus_6604#2 CTTCCCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACA 120 consensus_6604#1 CTTGGCCTCGTCCCCTCAGACGCCCAACTGCCTGTCCAGGGATGATGTTTGATGGAGACA 120 *** ******************************************************* consensus_6604#0 GAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATG 180 consensus_6604#2 GAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATG 180 consensus_6604#1 GAAGTCGGCAGCTAGCCCGAGGTCAAAGGTGTATTTAACGCCGGTCCCTCGACCATCATG 180 ************************************************************ consensus_6604#0 AACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTAT 240 consensus_6604#2 AACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTAT 240 consensus_6604#1 AACATCCTTTCTTCTTTCTTTCTCCTCAGCCCTCCAGCCAACCCAACAGCTCCTGAGTAT 240 ************************************************************ consensus_6604#0 CTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGC 300 consensus_6604#2 CTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGC 300 consensus_6604#1 CTCTGACTCTTTGACTTCGGTCGTCCACTCTTTCAAAACCAAACGCCAATAGCCTTGTGC 300 ************************************************************ consensus_6604#0 TTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCC 360 consensus_6604#2 TTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCC 360 consensus_6604#1 TTCACGCAAATACATTCACTTAATACCCCCTTCGTTCTTAAACGAAAACCCTTTATACCC 360 ************************************************************ consensus_6604#0 TTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGCCGCT 420 consensus_6604#2 TTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGNNCGG 420 consensus_6604#1 TTCAAATCAGTCAAAATGCGCTTCACTGCTGCTGCTGTCATCCTGGCCGGCTCTGCCGCT 420 ******************************************************* consensus_6604#0 GCCCACACCA-CCCCTGCCGGCTCGACCGTCTACAGCACCGNCTAC--GAGACCGTCAAC 477 consensus_6604#2 TGCCACACCAACCCTTGCCGGGTTGAACGGTTATAAGAACGGCTATCAAAAACCGTAACC 480 consensus_6604#1 GCCCACACCA-CCCCTGCCGGCTCGACCGTCTACAGCACCGCCTAC--GAGACCGTCACC 477 ******** *** ****** * ** ** ** * * ** *** * ***** * * consensus_6604#0 TCGTGCGCCCNCACTTGTCACCAACTGCCCGGGCTCGTCGACCGTCGTCAGCTTCAGCAT 537 consensus_6604#2 TGTTGCGCCCCCACTTGT-ACCAACTGCCCGGCCTCGTGGACCGTCGTNAGCTTCAGCAT 539 consensus_6604#1 TCGTGCGCCCNCACT-GTCACCAACTGCC-GGCCTCGTCGACCGTCG-CAGGCTCAGCAT 534 * ******* **** ** ********** ** ***** ******** ** ******* consensus_6604#0 CGNCACCCTTGACGCCTTGACCCGGTACACCAACTTGGTCCAGAACAATAACTNGTGCGC 597 consensus_6604#2 TGCCACCCTGACGCCCTCGACCGTCTACACCACCTCGGTCCAGACCATCACCTNGTGCGC 599 consensus_6604#1 CNGCACCCTTGACGCCTCGACC-GCTACACCANCTCG-TNCAGACCATTNACTCGTGCGC 592 ****** *** **** ******* ** * * **** ** ** ****** consensus_6604#0 TCCAACCGT-ACCAATGGCCCCGGGAGGCTTA-GTGTGA----CCAAACAATCCGTGTCA 651 consensus_6604#2 TCCCACCGTCACCAACTGCCCCGGCAAGCCCT-ACGTNGTGACCCAGACCATACCCGTCT 658 consensus_6604#1 TTCCAC-GTNACCACTG--CCCGGCAGGCCTACGTGTGA----CCAACACTTCTCGCTCA 645 * * ** ** **** ***** * ** ** *** * ** consensus_6604#0 ACACCTCTTGCCGGAACGGAACATAGACCCGGACAGGCCGCCGTGTCTTTCCCTGAGGAC 711 consensus_6604#2 TCACCACCCTCTGCCCGGTGACCGAGACCAAGAG-------------------------- 692 consensus_6604#1 ACACCT-TTGCCGTGACG-AACANA-ACACGGAACGCACGCGGTTCCT--CACTGAAGAC 700 **** * * * ** * ** ** consensus_6604#0 GACCGGTCCTGTGAACACCGGGAGCTTTCCCTGGGGCCTATAATGTGTTTCAATCCCGCG 771 consensus_6604#2 ------------------------------------------------------------ consensus_6604#1 GGCCCGTTCCGGGAGCCACCGGAGACTTCTCCTGCGCCCTACATGGTTACCAGTCCCG-G 759 consensus_6604#0 GCTCCTCCACCGTAGAAATATATTTATCTGTGTTAACTATTATATAAAAACAATCACCCG 831 consensus_6604#2 ------------------------------------------------------------ consensus_6604#1 TCTGCTACAGCGTTGACATATTAGTGCTTTGGTCTCCGTTTA-----ACACAATCCTCCA 814 consensus_6604#0 CGGCGTCACCGTCTGGTGGTAATATTCTTTANTNNAAAAACCAAATGAGGAAAACGTCTG 891 consensus_6604#2 ------------------------------------------------------------ consensus_6604#1 GGGCGCCTCGGGTCCCGAAGAGTCTCCAACCAACGACTTGTGCCCCAACCCACACGGCGC 874 consensus_6604#0 GTCCCTGTCGCTGTGTGTGTTTTTTCTCTCCCGCAACACGCAT---- 934 consensus_6604#2 ----------------------------------------------- consensus_6604#1 ACCTCCGCTTCCTCTTG-GTTTTTTTTCCACCCCACCGTGTGGTGTG 920 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||