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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1765 fasta sequence
[TAGCCCAAGTCCAAGTCTTTCTTCCTCCTCCGACCTCCCCCCATCTCCATCTCCGTGCTCATCTGCCTTCTTCTCTCCCCTTTCCCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAGATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGGCAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAACAAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGCTCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAGTATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAGAATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGTGAGGGTGGGTTTGGATGTGTGTATAGGGGTGTCATCAAGAATTCCGATGAACCAACTGAGCGCACCGAGATTGCTGTTAAACAGCTGAATCGCAAAGGACTTCAGGGGCAGAAAGAATGGTTAACAGAACTGAATGTGCTTGGGATTGTAGAGCATCCAAACCTCGTCAAACTAATTGGCTACTGCGCTGAAGATGATGAAAGGGGCGTACAGCGTCTCCTAGTATACGAATACATGCCTAATGGAAGCGTGGATGATCACTTGTCAAGTAGGTCAAATTCAACTCTATCATGGCCAATGAGACTAAAAGTAGCTCTGGACGCTGCTCGGGGACTGAAGTATCTGCATGAAGAGATGGAATTTCAGGTTATCTTCCGTGACCTAAAAACATCTAACATTCTGTTAGATGAGAACTGGAATGCAAAGTTGTCTGACTTTGGATTGGCTAGGCATGGACCATCAGAAGGCCTGACCCATGTCTCTACAGCGGTCGTGGGAACTCTTGGGTATGCAGCTCCGGAGTACATGCAGACCGGACGCCTCACTGCCAAGAGTGACATATGGGGCTATGGTGTGCTCCTTTATGAGCTCATCACCGGCCGCCGTCCCATTGACCGGAACCGCCCAAAGGGTGAGCAGAAGCTCCTGGATTGGGTGAAACCATACATATCTGATATCAAGCGGTTCCCCATCATCATAGACCCACGGCTAGAGGGGCACTACAACCTCAAGTCCATGACAAAGCTGGCTAGTGTGGCGAACCGCTGTCTCGTCCGGCTACCAAAGTCGCGCCCAAAGATGAGTGAGGTGTATGAGATGGTTCAGAAGATTGTGGCCAGCATTGAGACCGGCACACCACAGCCTCCTCTGCACTACCATGGGTCGGTTTCTGAACCGGGCTCAAAGCGGCCAAAGAAGGGGTCACTGAAGAGAAGGTTCCAAGAATTCAAATTCGGTTGCCGGCAGATTGTATGGCGGAGCTGGAAGCCTGAGATCATAAAGACTTGCTGAGAGAATACAGTAGCTTCCTGCCTGTAAGTATATAGCTAAGTTGTTCATAGGGATAAAGCTCTTCTTCCTCTGTATGCTTCCTGTCCTTGGGGTGATCTGATCCCATTTCGGGCACACAGTTGAGTACTTGAGTTGCAGTGTGAAGCCTTTTATCTTATAGGGTTCTGTGTGATGCATCTTGAGGTTGTAGATTCCATGTGTTTTCAGTATAATCCCTGTGGCTTTCCTCATCATGTAATATAGATCTTGTTTGTGCAATATGAAAGAAAAAAAAAGATGAGCTTTCTTGTATGAA]
[+] EMBL AK062188 [TAGCCCAAGTCCAAGTCTTTCTTCCTCCTCCGACCTCCCCCCATCTCCATCTCCGTGCTCATCTGCCTTCTTCTCTCCCCTTTCCCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAGATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGGCAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAACAAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGCTCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAGTATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCCCTGAGCTGAAGAATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGTGAGGGTGGGTTTGGATGTGTGTATAGGGGTGTCATCAAGAATTCCGATGAACCAACTGAGCGCACCGAGATTGCTGTTAAACAGCTGAATCGCAAAGGACTTCAGGGGCAGAAAGAATGGTTAACAGAACTGAATGTGCTTGGGATTGTAGAGCATCCAAACCTCGTCAAACTAATTGGCTACTGCGCTGAAGATGATGAAAGGGGCGTACAGCGTCTCCTAGTATACGAATACATGCCTAATGGAAGCGTGGATGATCACTTGTCAAGTAGGTCAAATTCAACTCTATCATGGCCAATGAGACTAAAAGTAGCTCTGGACGCTGCTCGGGGACTGAAGTATCTGCATGAAGAGATGGAATTTCAGGTTATCTTCCGTGACCTAAAAACATCTAACATTCTGTTAGATGAGAACTGGAATGCAAAGTTGTCTGACTTTGGATTGGCTAGGCATGGACCATCAGAAGGCCTGACCCATGTCTCTACAGCGGTCGTGGGAACTCTTGGGTATGCAGCTCCGGAGTACATGCAGACCGGACGCCTCACTGCCAAGAGTGACATATGGGGCTATGGTGTGCTCCTTTATGAGCTCATCACCGGCCGCCGTCCCATTGACCGGAACCGCCCAAAGGGTGAGCAGAAGCTCCTGGATTGGGTGAAACCATACATATCTGATATCAAGCGGTTCCCCATCATCATAGACCCACGGCTAGAGGGGCACTACAACCTCAAGTCCATGACAAAGCTGGCTAGTGTGGCGAACCGCTGTCTCGTCCGGCTACCAAAGTCGCGCCCAAAGATGAGTGAGGTGTATGAGATGGTTCAGAAGATTGTGGCCAGCATTGAGACCGGCACACCACAGCCTCCTCTGCACTACCATGGGTCGGTTTCTGAACCGGGCTCAAAGCGGCCAAAGAAGGGGTCACTGAAGAGAAGGTTCCAAGAATTCAAATTCGGTTGCCGGCAGATTGTATGGCGGAGCTGGAAGCCTGAGATCATAAAGACTTGCTGAGAGAATACAGTAGCTTCCTGCCTGTAAGTATATAGCTAAGTTGTTCATAGGGATAAAGCTCTTCTTCCTCTGTATGCTTCCTGTCCTTGGGGTGATCTGATCCCATTTCGGGCACACAGTTGAGTACTTGAGTTGCAGTGTGAAGCCTTTTATCTTATAGGGTTCTGTGTGATGCATCTTGAGGTTGTAGATTCCATGTGTTTTCAGTATAATCCCTGTGGCTTTCCTCATCATGTAATATAGATCTTGTTTGTGCAATATGAAAGAAAAAAAAAGATGAGCT ]
[+] EMBL CF276973 [ CCCATCTCCATCTCCGTGCTCATCTGCCTTCTTCTCTCCCCTTTCCCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAGATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGGCAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAACAAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGCTCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAGTATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAGAATGCCACTCGCAATTT ]
[+] EMBL AK098868 [ CGTCGCTTCCTGCCTGGATCGCACACACAAAGAGATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGGCAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAACAAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGCTCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAGTATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAGAATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGTGAGGGTGGGTTTGGATGTGTGTATAGGGGTGTCATCAAGAATTCCGATGAACCAACTGAGCGCACCGAGATTGCTGTTAAACAGCTGAATCGCAAAGGACTTCAGGGGCAGAAAGAATGGTTAACAGAACTGAATGTGCTTGGGATTGTAGAGCATCCAAACCTCGTCAAACTAATTGGCTACTGCGCTGAAGATGATGAAAGGGGCGTACAGCGTCTCCTAGTATACGAATACATGCCTAATGGAAGCGTGGATGATCACTTGTCAAGTAGGTCAAATTCAACTCTATCATGGCCAATGAGACTAAAAGTAGCTCTGGACGCTGCTCGGGGACTGAAGTATCTGCATGAAGAGATGGAATTTCAGGTTATCTTCCGTGACCTAAAAACATCTAACATTCTGTTAGATGAGAACTGGAATGCAAAGTTGTCTGACTTTGGATTGACTAGGCATGGACCATCAGAAGGCCTGACCCATGTCTCTACAGCGGTCGTGGGAACTCTTGGGTATGCAGCTCCGGAGTACATGCAGACCGGACGCCTCACTGCCAAGAGTGACATATGGGGCTATGGTGTGCTCCTTTATGAGCTCATCACCGGCCGCCGTCCCATTGACCGGAACCGCCCAAAGGGTGAGCAGAAGCTCCTGGATTGGGTGAAACCATACATATCTGATATCAAGCGGTTCCCCATCATCATAGACCCACGGCTAGAGGGGCACTACAACCTCAAGTCCATGACAAAGCTGGCTAGTGTGGCGAACCGCTGTCTCGTCCGGCTACCAAAGTCGCGCCCAAAGATGAGTGAGGTGTATGAGATGGTTCAGAAGATTGTGGCCAGCATTGAGACCGGCACACCACAGCCTCCTCTGCACTACCATGGGTCGGTTTCTGAACCGGGCTCAAAGCGGCCAAAGAAGGGGTCACTGAAGAGAAGGTTCCAAGAATTCAAATTCGGTTGCCGGCAGATTGTATGGCGGAGCTGGAAGCCTGAGATCATAAAGACTTGCTGAGAGAATACAGTAGCTTCCTGCCTGTAAGTATATAGCTAAGTTGTTCATAGGGATAAAGCTCTTCTTCCTCTGTATGCTTCCTGTCCTTGGGGTGATCTGATCCCATTTCGGGCACACAGTTGAGTACTTGAGTTGCAGTGTGAAGCTTTTTATCTTATAGGGTTCTGTGTGATGCATCTTGAGGTTGTAGATTCCATGTGTTTTCAGTATAATCCCTGTGGCTTTCCTCATCATGTAATATAGATCTTGTTTGTGCAATATGAAAGAAAAAAAAAGATGAGCTTTCTTGTATGAA]
consensusID : consensus_6607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence
[CATACAAACCCTCGCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAGATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGGCAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAACAAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGCTCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAGTATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAGAATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGCGAAGGGTTGTTGGA]
[+] EMBL BQ060183 [CATACAAACCCTCGCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAGATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGGCAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAACAAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGCTCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAGTATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAGAATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGCGAAGGGTTGTTGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6607#0 TAGCCCAAGTCCAAGTCTTTCTTCCTCCTCCGACCTCCCCCCATCTCCATCTCCGTGCTC 60
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 ATCTGCCTTCTTCTCTCCCCTTTCCCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAG 120
consensus_6607#1 -----------CATACAAACCCTCGCCGTCGCTTCCTGCCTGGATCGCACACACAAAGAG 49
* * ** ***********************************
consensus_6607#0 ATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGG 180
consensus_6607#1 ATCCCTCGCAGGCGGAGTGGTGCTTCCCCTCTCGGATCATCTTCGCCTCTGCAAGATTGG 109
************************************************************
consensus_6607#0 CAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAAC 240
consensus_6607#1 CAAGCAATGAGGTGCCTGCCTTTCTTGCATGGAGATTCCAAAGAGGAGGATCCCGTCAAC 169
************************************************************
consensus_6607#0 AAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGC 300
consensus_6607#1 AAGTCGGCTTCTGTCCGGTCGTTGAGCACAACATCGACGGAGCGGGATGTCCGGTCCGGC 229
************************************************************
consensus_6607#0 TCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAG 360
consensus_6607#1 TCCGACTTCAACTCCTTGAATGTCTCTGACATGAGTGCCGAATCAATACGGAGGACACAG 289
************************************************************
consensus_6607#0 TATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAG 420
consensus_6607#1 TATCCCAGCTTCACTGATCGGCCCAGTAACCTCAGGGTGTTCTCTTTCTCTGAGCTGAAG 349
************************************************************
consensus_6607#0 AATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGTGAGGGTGGGTTTGGATGTGTG 480
consensus_6607#1 AATGCCACTCGCAATTTTAGCCGGTCTCTTATGGTTGGCGAAGGGTTGTTGGA------- 402
************************************** ** ** *** *
consensus_6607#0 TATAGGGGTGTCATCAAGAATTCCGATGAACCAACTGAGCGCACCGAGATTGCTGTTAAA 540
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 CAGCTGAATCGCAAAGGACTTCAGGGGCAGAAAGAATGGTTAACAGAACTGAATGTGCTT 600
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 GGGATTGTAGAGCATCCAAACCTCGTCAAACTAATTGGCTACTGCGCTGAAGATGATGAA 660
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 AGGGGCGTACAGCGTCTCCTAGTATACGAATACATGCCTAATGGAAGCGTGGATGATCAC 720
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 TTGTCAAGTAGGTCAAATTCAACTCTATCATGGCCAATGAGACTAAAAGTAGCTCTGGAC 780
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 GCTGCTCGGGGACTGAAGTATCTGCATGAAGAGATGGAATTTCAGGTTATCTTCCGTGAC 840
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 CTAAAAACATCTAACATTCTGTTAGATGAGAACTGGAATGCAAAGTTGTCTGACTTTGGA 900
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 TTGGCTAGGCATGGACCATCAGAAGGCCTGACCCATGTCTCTACAGCGGTCGTGGGAACT 960
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 CTTGGGTATGCAGCTCCGGAGTACATGCAGACCGGACGCCTCACTGCCAAGAGTGACATA 1020
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 TGGGGCTATGGTGTGCTCCTTTATGAGCTCATCACCGGCCGCCGTCCCATTGACCGGAAC 1080
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 CGCCCAAAGGGTGAGCAGAAGCTCCTGGATTGGGTGAAACCATACATATCTGATATCAAG 1140
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 CGGTTCCCCATCATCATAGACCCACGGCTAGAGGGGCACTACAACCTCAAGTCCATGACA 1200
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 AAGCTGGCTAGTGTGGCGAACCGCTGTCTCGTCCGGCTACCAAAGTCGCGCCCAAAGATG 1260
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 AGTGAGGTGTATGAGATGGTTCAGAAGATTGTGGCCAGCATTGAGACCGGCACACCACAG 1320
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 CCTCCTCTGCACTACCATGGGTCGGTTTCTGAACCGGGCTCAAAGCGGCCAAAGAAGGGG 1380
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 TCACTGAAGAGAAGGTTCCAAGAATTCAAATTCGGTTGCCGGCAGATTGTATGGCGGAGC 1440
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 TGGAAGCCTGAGATCATAAAGACTTGCTGAGAGAATACAGTAGCTTCCTGCCTGTAAGTA 1500
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 TATAGCTAAGTTGTTCATAGGGATAAAGCTCTTCTTCCTCTGTATGCTTCCTGTCCTTGG 1560
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 GGTGATCTGATCCCATTTCGGGCACACAGTTGAGTACTTGAGTTGCAGTGTGAAGCCTTT 1620
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 TATCTTATAGGGTTCTGTGTGATGCATCTTGAGGTTGTAGATTCCATGTGTTTTCAGTAT 1680
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 AATCCCTGTGGCTTTCCTCATCATGTAATATAGATCTTGTTTGTGCAATATGAAAGAAAA 1740
consensus_6607#1 ------------------------------------------------------------
consensus_6607#0 AAAAAGATGAGCTTTCTTGTATGAA 1765
consensus_6607#1 -------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||