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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6612#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1337 fasta sequence
[AGGTTGATGCAGTCTATACCAAGCCATTTAAGACCGATACCCTGCTCATCACTCCAGGCCAGACCACCAACGTCCTTGTTAGAGCTAACCAAGGCGCTGGCCGTTACCTTCTCTCAGTCTCCCCCTTCATGGATGCGCCCGTGCAGGTTGACAACAAAACAGGTACCGCTACTTTGCACTACGCCAACACAGTCTCGTCAAGCATGGCATCCCTCACTCTCGTCAAGCCACCACCACAAAATGCCACCCATATCGTATCAAAATTTACTGATTCACTCCATAGTCTCAATTCCAAGGAGTACCCAGCCAATGTGCCACAGACAGTAGACCACTCCCTTCTCCTTACCGTTGGCGTAGGTGTCAATCCATGTCCAAGCTGCATCAATGGGACAAGGGTGGTGGGCACAATCAACAACGTGACGTTCATCATGCCATCAACCCCAATTCTTCAAGCCCACTATTACAACATTCCAGGAGTGTTCACAGAAGACTTCCCAGCAACCCCACTGCACAAGTTCAACTATACAGGAAGTGGTCCCAAAAACCTTCAAACCATGAATGGAACCAGGGTTTACAGGCTGCCATACAATGCTTCAGTGCAGGTTGTACTCCAGGATACGGGAATCATATCACCAGAAAGCCACCCAATCCATTTACATGGCTTTAATTTTTTTGTGGTTGGGAAAGGGGTCGGGAACTACAACCCCAGGACCTCCCCTTCTACATTCAACCTCATCGACCCCATCGAGAGGAACACCATTGGAGTTCCTACTGGTGGTTGGACGGCAATCAGATTTAGGTCAGACAACCCAGGTATTGATTTTAAAACCTATGTTTTTTTAAGATAAATAACCCCTTCTGTTTCCAGACACATTGATTGAGCTGTTATATTGCAGGTGTTTGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGGCCTTTGTGGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCACCACCCAAAGATCTTCCGCAGTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGTAATTGGCTTTGGTCCGATGTACGGAAAGAATCAACGGTGATTTCTACCATGTGCTACTACTTGACTCTTGCCACACATTTTTTTCTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGATAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCTTTTTCAATTAATGAAAATGTATATGTTGGCATGCCTCATGAATTGAATGTTTGTTGAGAATTAGAGAAAGAAAAAAA]
[+] EMBL AK060544 [AGGTTGATGCAGTCTATACCAAGCCATTTAAGACCGATACCCTGCTCATCACTCCAGGCCAGACCACCAACGTCCTTGTTAGAGCTAACCAAGGCGCTGGCCGTTACCTTCTCTCAGTCTCCCCCTTCATGGATGCGCCCGTGCAGGTTGACAACAAAACAGGTACCGCTACTTTGCACTACGCCAACACAGTCTCGTCAAGCATGGCATCCCTCACTCTCGTCAAGCCACCACCACAAAATGCCACCCATATCGTATCAAAATTTACTGATTCACTCCATAGTCTCAATTCCAAGGAGTACCCAGCCAATGTGCCACAGACAGTAGACCACTCCCTTCTCCTTACCGTTGGCGTAGGTGTCAATCCATGTCCAAGCTGCATCAATGGGACAAGGGTGGTGGGCACAATCAACAACGTGACGTTCATCATGCCATCAACCCCAATTCTTCAAGCCCACTATTACAACATTCCAGGAGTGTTCACAGAAGACTTCCCAGCAACCCCACTGCACAAGTTCAACTATACAGGAAGTGGTCCCAAAAACCTTCAAACCATGAATGGAACCAGGGTTTACAGGCTGCCATACAATGCTTCAGTGCAGGTTGTACTCCAGGATACGGGAATCATATCACCAGAAAGCCACCCAATCCATTTACATGGCTTTAATTTTTTTGTGGTTGGGAAAGGGGTCGGGAACTACAACCCCAGGACCTCCCCTTCTACATTCAACCTCATCGACCCCATCGAGAGGAACACCATTGGAGTTCCTACTGGTGGTTGGACGGCAATCAGATTTAGGTCAGACAACCCAGGTATTGATTTTAAAACCTATGTTTTTTTAAGATAAATAACCCCTTCTGTTTCCAGACACATTGATTGAGCTGTTATATTGCAGGTGTTTGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGGCCTTTGTGGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCACCACCCAAAGATCTTCCGCAGTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGTAATTGGCTTTGGTCCGATGTACGGAAAGAATCAACGGTGATTTCTACCATGTGCTACTACTTGACTCTTGCCACACATTTTTTTCTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGATAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCTTTTTCAATTAATGAAAATGTATATGTTGGCATGCCTCATGAATTGAATGTTTGTTG ]
[+] EMBL OSR29861A [ CTTCTCTCAGTCTCCCCCTTCATGGATGCGCCCGTGCAGGTTGACAACAAAACAGGCACCGCTACTTTGCACTACGCCAACACAGTCTCGTCAAGCATGGCATCCCTCACTCTCGTCAAGCCACCACCACAAAATGCCACCCATATCGTATCAAAATTTACTGATTCACTCCATAGTCTCAATTCCAAGGAGTACCCAGCCAATGTGCCACAGACAGTAGACCACTCCCTTCTCCTTACCG ]
[+] EMBL AU173416 [ TGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGGCCTTTGTGGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCACCACCCAAAGATCTTCCGCAGTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGTAATTGGCTTTGGTCCGATGTACGGAAAGAATCAACGGTGATTTNTACCATGTGCTACTACTTGACTCTTGCCACACATTTTTTTNTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGATAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCTTTTTCAATTAATNAAAATGTATATGTTGGCATGCCTCATNAATTGAATGTTTGTTNAGAATTAGAGAAAGAAAAAAA]
consensusID : consensus_6612#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[NCCTTCAANCCATGAATGANNCCAGGGTTTCCAGGGTGCCATACAATGCTTCAGTGCAGGTTGTACTCCAGGATACGGGAATCATATCACCAGAAAGCCACCCAATCCATTTACATGGCTTTAATTTTTTGTGGTGGGAAAGGGGTCGGGAACTACAACCCCAGGACCTCCCCTTTTACATTCAACCTCATCGACCCCATCGAGAGGAACACCATTGGAGTTCCTACTGGTGGTTGGACGGCAATCAGATTTAGGTCAGACAACCCAGGTGTTTGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGACCTTTGTGGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCCCCACCCAAAGATTTTCCGCAGTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGTAATTGGCTTTGGTCCGATGTACGGAAAAAATCAACGGTGATTTTTACCATGTGCTACTACTTGACTCTTGCCACACATTTTTTTTTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGATAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCTTTTTCAATTAATGAAAATGTATATGTTGGCATGCCTCAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760339 [NCCTTCAANCCATGAATGANNCCAGGGTTTCCAGGGTGCCATACAATGCTTCAGTGCAGGTTGTACTCCAGGATACGGGAATCATATCACCAGAAAGCCACCCAATCCATTTACATGGCTTTAATTTTTTGTGGTGGGAAAGGGGTCGGGAACTACAACCCCAGGACCTCCCCTTTTACATTCAACCTCATCGACCCCATCGAGAGGAACACCATTGGAGTTCCTACTGGTGGTTGGACGGCAATCAGATTTAGGTCAGACAACCCAGGTGTTTGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGACCTTTGTGGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCCCCACCCAAAGATTTTCCGCAGTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGTAATTGGCTTTGGTCCGATGTACGGAAAAAATCAACGGTGATTTTTACCATGTGCTACTACTTGACTCTTGCCACACATTTTTTTTTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGATAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCTTTTTCAATTAATGAAAATGTATATGTTGGCATGCCTCAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6612#0 AGGTTGATGCAGTCTATACCAAGCCATTTAAGACCGATACCCTGCTCATCACTCCAGGCC 60
consensus_6612#1 ------------------------------------------------------------
consensus_6612#0 AGACCACCAACGTCCTTGTTAGAGCTAACCAAGGCGCTGGCCGTTACCTTCTCTCAGTCT 120
consensus_6612#1 ------------------------------------------------------------
consensus_6612#0 CCCCCTTCATGGATGCGCCCGTGCAGGTTGACAACAAAACAGGTACCGCTACTTTGCACT 180
consensus_6612#1 ------------------------------------------------------------
consensus_6612#0 ACGCCAACACAGTCTCGTCAAGCATGGCATCCCTCACTCTCGTCAAGCCACCACCACAAA 240
consensus_6612#1 ------------------------------------------------------------
consensus_6612#0 ATGCCACCCATATCGTATCAAAATTTACTGATTCACTCCATAGTCTCAATTCCAAGGAGT 300
consensus_6612#1 ------------------------------------------------------------
consensus_6612#0 ACCCAGCCAATGTGCCACAGACAGTAGACCACTCCCTTCTCCTTACCGTTGGCGTAGGTG 360
consensus_6612#1 ------------------------------------------------------------
consensus_6612#0 TCAATCCATGTCCAAGCTGCATCAATGGGACAAGGGTGGTGGGCACAATCAACAACGTGA 420
consensus_6612#1 ------------------------------------------------------------
consensus_6612#0 CGTTCATCATGCCATCAACCCCAATTCTTCAAGCCCACTATTACAACATTCCAGGAGTGT 480
consensus_6612#1 ------------------------------------------------------------
consensus_6612#0 TCACAGAAGACTTCCCAGCAACCCCACTGCACAAGTTCAACTATACAGGAAGTGGTCCCA 540
consensus_6612#1 ------------------------------------------------------------
consensus_6612#0 AAAACCTTCAAACCATGAATGGAACCAGGGTTTACAGGCTGCCATACAATGCTTCAGTGC 600
consensus_6612#1 ---NCCTTCAANCCATGAATGANNCCAGGGTTTCCAGGGTGCCATACAATGCTTCAGTGC 57
******* ********* ********* **** *********************
consensus_6612#0 AGGTTGTACTCCAGGATACGGGAATCATATCACCAGAAAGCCACCCAATCCATTTACATG 660
consensus_6612#1 AGGTTGTACTCCAGGATACGGGAATCATATCACCAGAAAGCCACCCAATCCATTTACATG 117
************************************************************
consensus_6612#0 GCTTTAATTTTTTTGTGGTTGGGAAAGGGGTCGGGAACTACAACCCCAGGACCTCCCCTT 720
consensus_6612#1 GCTTTAATTTTTT-GTGGT-GGGAAAGGGGTCGGGAACTACAACCCCAGGACCTCCCCTT 175
************* ***** ****************************************
consensus_6612#0 CTACATTCAACCTCATCGACCCCATCGAGAGGAACACCATTGGAGTTCCTACTGGTGGTT 780
consensus_6612#1 TTACATTCAACCTCATCGACCCCATCGAGAGGAACACCATTGGAGTTCCTACTGGTGGTT 235
***********************************************************
consensus_6612#0 GGACGGCAATCAGATTTAGGTCAGACAACCCAGGTATTGATTTTAAAACCTATGTTTTTT 840
consensus_6612#1 GGACGGCAATCAGATTTAGGTCAGACAACCCAGGT------------------------- 270
***********************************
consensus_6612#0 TAAGATAAATAACCCCTTCTGTTTCCAGACACATTGATTGAGCTGTTATATTGCAGGTGT 900
consensus_6612#1 ----------------------------------------------------------GT 272
**
consensus_6612#0 TTGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGGCCTTTGT 960
consensus_6612#1 TTGGTTTATGCATTGTCATTTCGAGGTGCACACATCATGGGGACTCAAGATGACCTTTGT 332
**************************************************** *******
consensus_6612#0 GGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCACCACCCAAAGATCTTCCGCA 1020
consensus_6612#1 GGTGGATAATGGAAAGAGACCTAGTGAGACTCTGATTCCCCCACCCAAAGATTTTCCGCA 392
*************************************** ************ *******
consensus_6612#0 GTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGT 1080
consensus_6612#1 GTGTTAACAACATGGGATTCAAAACTGCCCCCACGGAGAGGAGCCTATTACAAGAAGGGT 452
************************************************************
consensus_6612#0 AATTGGCTTTGGTCCGATGTACGGAAAGAATCAACGGTGATTTCTACCATGTGCTACTAC 1140
consensus_6612#1 AATTGGCTTTGGTCCGATGTACGGAAAAAATCAACGGTGATTTTTACCATGTGCTACTAC 512
*************************** *************** ****************
consensus_6612#0 TTGACTCTTGCCACACATTTTTTTCTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGA 1200
consensus_6612#1 TTGACTCTTGCCACACATTTTTTTTTCCTTTTTGATTTTTTTGGGCTTGTTTACCAAAGA 572
************************ ***********************************
consensus_6612#0 TAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCT 1260
consensus_6612#1 TAGTGCATACAGGGCATTCAGGTTGTAATTAGCTCTTGCCATGACCAACTTGTTCCCCCT 632
************************************************************
consensus_6612#0 TTTTCAATTAATGAAAATGTATATGTTGGCATGCCTCATGAATTGAATGTTTGTTGAGAA 1320
consensus_6612#1 TTTTCAATTAATGAAAATGTATATGTTGGCATGCCTCAAAAA--------------AAAA 678
************************************** ** * **
consensus_6612#0 TTAGAGAAAGAAAAAAA 1337
consensus_6612#1 AAAAAAAAAAAAAA--- 692
* * *** ****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||