These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6613#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence [CTCAACATCACCGCCACCTCCACCAACCAGGTCAACGTCTCCACCGGCGTCGTNGACACCACGCTCGGCACCGCGNTGCGCGCCGACCAGCCGCTCGCCGTTTACTCCGTCGACAAGGTGCTCCTTCCCGTACGCGCTGTTCGGCCCCAANCCGCCGCCGTCCCCGCCGCCGGCGCCCAGCAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGCTCCGCCGACCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAANATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAAAAAAAAAAAAAAAA] [+] EMBL AU183862 [CTCAACATCACCGCCACCTCCACCAACCAGGTCAACGTCTCCACCGGCGTCGTNGACACCACGCTCGGCACCGCGNTGCGCGCCGACCAGCCGCTCGCCGTTTACTCCGTCGACAAGGTGCTCCTTCCCGTACGCGCTGTTCGGCCCCAANCCGCCGCCGTCCCCGCCGCCGGCGCCCAGCAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGCTCCGCCGACCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAANATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAAAAAAAAAAAAAAAA] consensusID : consensus_6613#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 334 fasta sequence [GCGCCCAGCAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGCTCCGCCGACCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACTACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTGGTTTTGAAGAGTGGATGACGAAAAAA] [+] EMBL AU184570 [GCGCCCAGCAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGCTCCGCCGACCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACTACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTGGTTTTGAAGAGTGGATGACGAAAAAA] [+] EMBL AU173420 [ CACCCTGCCGGNGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACTACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTGGTTTTGAAGAGTGGATGACGAAAAAA] consensusID : consensus_6613#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 312 fasta sequence [GCTGAGAGCAATGGCGATGGTGGCGAGGAGGTTCTTNGTGGCGCCGACCACCCTNCCGGCGCCGCCCCCGCCGNCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACTACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTGGTTTTGAAGAGTGGATGAAAAAAAA] [+] EMBL OSR10052A [GCTGAGAGCAATGGCGATGGTGGCGAGGAGGTTCTTNGTGGCGCCGACCACCCTNCCGGCGCCGCCCCCGCCGNCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTTGCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGAGGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACTACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTGGTTTTGAAGAGTGGATGAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6613#1 ------------------------------------------------------------ consensus_6613#2 ------------------------------------------------------------ consensus_6613#0 CTCAACATCACCGCCACCTCCACCAACCAGGTCAACGTCTCCACCGGCGTCGTNGACACC 60 consensus_6613#1 ------------------------------------------------------------ consensus_6613#2 ------------------------------------------------------------ consensus_6613#0 ACGCTCGGCACCGCGNTGCGCGCCGACCAGCCGCTCGCCGTTTACTCCGTCGACAAGGTG 120 consensus_6613#1 ----------------------------------------------------GCGCCCAG 8 consensus_6613#2 ------------------------------------------------------------ consensus_6613#0 CTCCTTCCCGTACGCGCTGTTCGGCCCCAANCCGCCGCCGTCCCCGCCGCCGGCGCCCAG 180 consensus_6613#1 CAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGCTCCGCCGA 68 consensus_6613#2 ----------GCTGAGAGCAATGGCGATGGTGGCGAGGAGGTTCTTNGTGGC---GCCGA 47 consensus_6613#0 CAAGAAGCCGGCCAAGGGGGACACCAGCGCGTCCGCGGAGGCGCCCGCTGGCTCCGCCGA 240 ** ** * * * * ** ***** * **** ***** consensus_6613#1 CCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTT 128 consensus_6613#2 CCACCCTNCCGGCGCCGCCCCCGCCGNCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTT 107 consensus_6613#0 CCACCCTGCCGGCGCCGCCCCCGCCGCCGCCAGGGCCGCCGGGTGGGGCGTGGCTGCCTT 300 ******* ****************** ********************************* consensus_6613#1 GCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGA 188 consensus_6613#2 GCTGGCCGCCGCTTGCCTCTTGTAAGATGAGAAATTCGTGTCGGTGCATATGAGATCAGA 167 consensus_6613#0 GCTGGCCGCCGCTTGCCTCTTGTAANATGAGAAATTCGTGTCGGTGCATATGAGATCAGA 360 ************************* ********************************** consensus_6613#1 GGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACT 248 consensus_6613#2 GGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAACTTAAACT 227 consensus_6613#0 GGCTACTACTGGCTGAGTGCATGATGCATTTCAAGAGTAGTTCTTGCTGCAAAAAAAAAA 420 **************************************************** *** consensus_6613#1 ACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTG 308 consensus_6613#2 ACTCCTCTTCCTCTCCTTATTCTTCTCTCTCTCCTTGTGATTGAACAAATTTATCCAGTG 287 consensus_6613#0 AAAAAA------------------------------------------------------ 426 * consensus_6613#1 GTTTTGAAGAGTGGATGACGAAAAAA 334 consensus_6613#2 GTTTTGAAGAGTGGATGAAAAAAAA- 312 consensus_6613#0 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||