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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1455 fasta sequence
[TCTCCCACCGCCGCCGCAGCCCACCACCAGCCGCCGCCTCGGCCGCGAGATCGCCGGCCGCCGCCATGTCGAATCCGGCCGCCTACTACGCCGCCGTCGCGCGGAAGCAGTACTTCTGCTACCAATGCAACCGCACCGTCCTCCTCCCGGCCTCCGCCGCCGCCGCCGGGGCGCTCTCCTGCCCGGAGTGCCGCGGGGATTTCATCGAGGAGGTCAACGTCCCCGCCCCCGCCATCATCCCCTTCCCCTTCGCCTTCCCCCCGATGATGCCCACCGCCACCTCCGCCTCCGCCGCCGCCGCCGCCGCGGCCTCGCCGACCCAGTCCTCCTCCTCGTCCGCCGCCACGTCGCCATCCAGCGACCTCTCCGCCTTCCTCAACAGCATGCTCGGCCCGCTCAACCTCCGCACCGACGAGCGGATGCCGGGAACCACCTCCGCCGCGGGCACGGCGACCCCCGAGGACGAGCCCGACGGGTTCGACGCGGTCACGTTCTTCCAGAACTACCTCCAGAATCTCATGGACGGCGGCGCCAACATCCAGGTCCTCCTCGACGACGCCAGCGTCGGCCTCGCCCCCGGCATCGGCCGCGTCGGCGGCGCCAGCTTCGGGGACTACTTCGTCGGCCCGGGCCTGGAGCAGCTCATCGAGCAGCTCACCGAGAACGACCCGAACCGCTACGGCACGCCGCCGGCGGCCAAGTCGGCTCTCTCCACGCTCCCCGATGTCGTCGTGACCGACGCCATGGTCGCCGCGGCGGATGGCGCCGAGTGCGCCGTCTGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTACCACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTTGAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACTGCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAGCGAGAGGAGAGTGGGGAGAGTGCGAGGTTGGTCGAACGGCGGTTTAACGTGTCGCTGCCATGGCCTTTTAGTGGATTGGGATCGCAAACGCCGCAGCAGGATGGGAGCAATGGGGGCGCTGGTGCCAGTGGCTCGAAGGATGGAGGCGCATCCAGTGACAAAAAATAAGCATAAATGTGCGATTGATTGGAGGTTTTCCTCTTGGATCTGGCGTTCAAAGGTCTACAATATTTATGTGTCGCTGCCACTTATATACTATAGACATCAAAAGACCAAAGAAATTTACAGTCTTTTTATCCGCTGGAACAATTGTTCATTCTTGTTCTCGCTGCCCGTTAGGTCATGTACACAAGGCACGGAAACTGCCGAGGCAGGAAACGTGCGTTGGGAGTTTGAGACTTTTATGTGTAGATTTGTTAATTAAATTCATCAAAGTACCAAACTT]
[+] EMBL AK064407 [TCTCCCACCGCCGCCGCAGCCCACCACCAGCCGCCGCCTCGGCCGCGAGATCGCCGGCCGCCGCCATGTCGAATCCGGCCGCCTACTACGCCGCCGTCGCGCGGAAGCAGTACTTCTGCTACCAATGCAACCGCACCGTCCTCCTCCCGGCCTCCGCCGCCGCCGCCGGGGCGCTCTCCTGCCCGGAGTGCCGCGGGGATTTCATCGAGGAGGTCAACGTCCCCGCCCCCGCCATCATCCCCTTCCCCTTCGCCTTCCCCCCGATGATGCCCACCGCCACCTCCGCCTCCGCCGCCGCCGCCGCCGCGGCCTCGCCGACCCAGTCCTCCTCCTCGTCCGCCGCCACGTCGCCATCCAGCGACCTCTCCGCCTCCCTCAACAGCATGCTCGGCCCGCTCAACCTCCGCACCGACGAGCGGATGCCGGGAACCACCTCCGCCGCGGGCACGGCGACCCCCGAGGACGAGCCCGACGGGTTCGACGCGGTCACGTTCTTCCAGAACTACCTCCAGAATCTCATGGACGGCGGCGCCAACATCCAGGTCCTCCTCGACGACGCCAGCGTCGGCCTCGCCCCCGGCATCGGCCGCGTCGGCGGCGCCAGCTTCGGGGACTACTTCGTCGGCCCGGGCCTGGAGCAGCTCATCGAGCAGCTCACCGAGAACGACCCGAACCGCTACGGCACGCCGCCGGCGGCCAAGTCGGCTCTCTCCACGCTCCCCGATGTCGTCGTGACCGACGCCATGGTCGCCGCGGCGGATGGCGCCGAGTGCGCCGTCTGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTACCACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTTGAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACTGCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAGCGAGAGGAGAGTGGGGAGAGTGCGAGGTTGGTCGAACGGCGGTTTAACGTGTCGCTGCCATGGCCTTTTAGTGGATTGGGATCGCAAACGCCGCAGCAGGATGGGAGCAATGGGGGCGCTGGTGCCAGTGGCTCGAAGGATGGAGGCGCATCCAGTGACAAAAAATAAGCATAAATGTGCGATTGATTGGAGGTTTTCCTCTTGGATCTGGCGTTCAAAGGTCTACAATATTTATGTGTCGCTGCCACTTATATACTATAGACATCAAAAGACCAAAGAAATTTACAGTCTTTTTATCCGCTGGAACAATTGTTCATTCTTGTTCTCGCTGCCCGTTAGGTCATGTACACAAGGCACGGAAACTGCCGAGGCAGGAAACGTGCGTTGGGAGTTTGAGACTTTTATGTGTAGATTTGTTAATTAAATTCATCAAAGTACCAAACTT]
[+] EMBL AK102471 [ CCGCCGCCTCGGCCGCGAGATCGCCGGCCGCCGCCATGTCGAATCCGGCCGCCTACTACGCCGCCGTCGCGCGGAAGCAGTACTTCTGCTACCAATGCAACCGCACCGTCCTCCTCCCGGCCTCCGCCGCCGCCGCCGGGGCGCTCTCCTGCCCGGAGTGCCGCGGGGATTTCATCGAGGAGGTCAACGTCCCCGCCCCCGCCATCATCCCCTTCCCCTTCGCCTTCCCCCCGATGATGCCCACCGCCACCTCCGCCTCCGCCGCCGCCGCCGCCGCGGCCTCGCCGACCCAGTCCTCCTCCTCGTCCGCCGCCACGTCGCCATCCAGCGACCTCTCCGCCTTCCTCAACAGCATGCTCGGCCCGCTCAACCTCCGCACCGACGAGCGGATGCCGGGAACCACCTCCGCCGCGGGCACGGCGACCCCCGAGGACGAGCCCGACGGGTTCGACGCGGTCACGTTCTTCCAGAACTACCTCCAGAATCTCATGGACGGCGGCGCCAACATCCAGGTCCTCCTCGACGACGCCAGCGTCGGCCTCGCCCCCGGCATCGGCCGCGTCGGCGGCGCCAGCTTCGGGGACTACTTCGTCGGCCCGGGCCTGGAGCAGCTCATCGAGCAGCTCACCGAGAACGACCCGAACCGCTACGGCACGCCGCCGGCGGCCAAGTCGGCTCTCTCCACGCTCCCCGATGTCGTCGTGACCGACGCCATGGTCGCCGCGGCGGATGGCGCCGAGTGCGCCGTCTGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTACCACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTTGAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACTGCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAGCGAGAGGAGAGTGGGGAGAGTGCGAGGTTGGTCGAACGGCGGTTTAACGTGTCGCTGCCATGGCCTTTTAGTGGATTGGGATCGCAAACGCCGCAGCAGGATGGGAGCAATGGGGGCGCTGGTGCCAGTGGCTCGAAGGATGGAGGCGCATCCAGTGACAAAAAATAAGCATAAATGTGCGATTGATTGGAGGTTTTCCTCTTGGATCTGGCGTTCAAAGGTCTACAATATTTATGTGTCGCTGCCACTTATATACTATAGACATCAAAAGACCAAAGAAATTTACAGTCTTTTTATCCGCTGGAACAATTGTTCATTCTTGTTCTCGCTGCCCGTTAGGTCATGTACACAAGGCACGGAAACTGCCGAGGCAGGAAACGTGCGTTGGGAGTTTGAGACTTTTATGTGTAGATTTGTTAATTAAATTCATCAAAGTACCA ]
[+] EMBL AK073407 [ CTTCCCCTTCGCCTTCCCCCCGATGATGCCCACCGCCACCTCCGCCTCCGCCGCCGCCGCCGCCGCGGCCTCGCCGACCCAGTCCTCCTCCTCGTCCGCCGCCACGTCGCCATCCAGCGACCTCTCCGCCTTCCTCAACAGCATGCTCGGCCCGCTCAACCTCCGCACCGACGAGCGGATGCCGGGAACCACCTCCGCCGCGGGCACGGCGACCCCCGAGGACGAGCCCGACGGGTTCGACGCGGTCACGTTCTTCCAGAACTACCTCCAGAATCTCATGGACGGCGGCGCCAACATCCAGGTCCTCCTCGACGACGCCAGCGTCGGCCTCGCCCCCGGCATCGGCCGCGTCGGCGGCGCCAGCTTCGGGGACTACTTCGTCGGCCCGGGCCTGGAGCAGCTCATCGAGCAGCTCACCGAGAACGACCCGAACCGCTACGGCACGCCGCCGGCGGCCAAGTCGGCTCTCTCCACGCTCCCCGATGTCGTCGTGACCGACGCCATGGTCGCCGCGGCGGATGGCGCCGAGTGCGCCGTCTGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTACCACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTTGAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACTGCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAGCGAGAGGAGAGTGGGGAGAGTGCGAGGTTGGTCGAACGGCGGTTTAACGTGTCGCTGCCATGGCCTTTTAGTGGATTGGGATCGCAAACGCCGCAGCAGGATGGGAGCAATGGGGGCGCTGGTGCCAGTGGCTCGAAGGATGGAGGCGCATCCAGTGACAAAAAATAAGCATAAATGTGCGATTGATTGGAGGTTTTCCTCTTGGATCTGGCGTTCAAAGGTCTACAATATTTATGTGTCGCTGCCACTTATATACTATAGACATCAAAAGACCAAAGAAATTTACAGTCTTTTTATCCGCTGGAACAATTGTTCATTCTTGTTCTCGCTGCCCGTTAGGTCATGTACACAAGGCACGGAAACTGCCGAGGCAGGAAACGTGCGTTGGGAGTTTGAGACTTTTATGTGTAGATTTGTTAATTAAATTCA ]
consensusID : consensus_6619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence
[AGGAGGCGAGACCTAATTTCCCAAAGAAAAAAAAAGAAAAACAAAATCCCATCTCCCACCGCCGCCGCAGCCCACCACCAGCCGCCGCCTCGGCCGCGAGATCGCCGGCCGCCGCCATGTCGAATCCGGCCGCCTACTACGCCGCCGTCTGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTACCACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTTGAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACTGCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAG]
[+] EMBL BP184607 [AGGAGGCGAGACCTAATTTCCCAAAGAAAAAAAAAGAAAAACAAAATCCCATCTCCCACCGCCGCCGCAGCCCACCACCAGCCGCCGCCTCGGCCGCGAGATCGCCGGCCGCCGCCATGTCGAATCCGGCCGCCTACTACGCCGCCGTCTGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTACCACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTTGAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACTGCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6619#0 TCTCCCACCGCCGCCGCAGCCCACCACCAGCCGCCGCCTCGGCCGCGAGATCGCCGGCCG 60
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 CCGCCATGTCGAATCCGGCCGCCTACTACGCCGCCGTCGCGCGGAAGCAGTACTTCTGCT 120
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 ACCAATGCAACCGCACCGTCCTCCTCCCGGCCTCCGCCGCCGCCGCCGGGGCGCTCTCCT 180
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 GCCCGGAGTGCCGCGGGGATTTCATCGAGGAGGTCAACGTCCCCGCCCCCGCCATCATCC 240
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 CCTTCCCCTTCGCCTTCCCCCCGATGATGCCCACCGCCACCTCCGCCTCCGCCGCCGCCG 300
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 CCGCCGCGGCCTCGCCGACCCAGTCCTCCTCCTCGTCCGCCGCCACGTCGCCATCCAGCG 360
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 ACCTCTCCGCCTTCCTCAACAGCATGCTCGGCCCGCTCAACCTCCGCACCGACGAGCGGA 420
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 TGCCGGGAACCACCTCCGCCGCGGGCACGGCGACCCCCGAGGACGAGCCCGACGGGTTCG 480
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 ACGCGGTCACGTTCTTCCAGAACTACCTCCAGAATCTCATGGACGGCGGCGCCAACATCC 540
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 AGGTCCTCCTCGACGACGCCAGCGTCGGCCTCGCCCCCGGCATCGGCCGCGTCGGCGGCG 600
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 CCAGCTTCGGGGACTACTTCGTCGGCCCGGGCCTGGAGCAGCTCATCGAGCAGCTCACCG 660
consensus_6619#1 --------------------AGGAGGCGAGACCT--AATTTCCCAAAGAAAAAAAAAGAA 38
* * * *** * * ** ** * *
consensus_6619#0 AGA-ACGACCCGAACCGCTACGGCACGCCGCCGGCGGCCAAGTCGGCTCTCTCCACGCTC 719
consensus_6619#1 AAACAAAATCCCATCTCCCACCGC-CGCCGCAGCCCACCA--CCAGCCGCCGCCTCGG-C 94
* * * * ** * * * ** ** ****** * * *** * ** * ** ** *
consensus_6619#0 CCCGATGTCGTCGTGACCGACGCCATGGTCGCCGCGGCGGATGGCGCCGAGTGCGCCGTC 779
consensus_6619#1 CGCGAGATCGCCG--GCCGCCGCCATGTCGAATCCGGCCGCCTACTACGC---CGCCGTC 149
* *** *** ** *** ******* **** * * ** *******
consensus_6619#0 TGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTAC 839
consensus_6619#1 TGCAAGGAGGATTTCTCGCCTGGGGAAGGGGCCAAGCAGATGCCCTGCAAGCACATTTAC 209
************************************************************
consensus_6619#0 CACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTT 899
consensus_6619#1 CACGCCGACTGCATCATGCCATGGCTGGATCTCCACAATTCATGCCCCATATGCCGCTTT 269
************************************************************
consensus_6619#0 GAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACT 959
consensus_6619#1 GAGCTGCCTACTGATGACCCTGATTACGAGGGGCGTAAGAAATCAAACCCACAGCCAACT 329
************************************************************
consensus_6619#0 GCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAGCGAGAGGAG 1019
consensus_6619#1 GCTGGCGTTGATGCCGGAGCTGCATCTGGGAGTTCTACTGCTGCTGAGGAG--------- 380
***************************************************
consensus_6619#0 AGTGGGGAGAGTGCGAGGTTGGTCGAACGGCGGTTTAACGTGTCGCTGCCATGGCCTTTT 1079
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 AGTGGATTGGGATCGCAAACGCCGCAGCAGGATGGGAGCAATGGGGGCGCTGGTGCCAGT 1139
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 GGCTCGAAGGATGGAGGCGCATCCAGTGACAAAAAATAAGCATAAATGTGCGATTGATTG 1199
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 GAGGTTTTCCTCTTGGATCTGGCGTTCAAAGGTCTACAATATTTATGTGTCGCTGCCACT 1259
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 TATATACTATAGACATCAAAAGACCAAAGAAATTTACAGTCTTTTTATCCGCTGGAACAA 1319
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 TTGTTCATTCTTGTTCTCGCTGCCCGTTAGGTCATGTACACAAGGCACGGAAACTGCCGA 1379
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 GGCAGGAAACGTGCGTTGGGAGTTTGAGACTTTTATGTGTAGATTTGTTAATTAAATTCA 1439
consensus_6619#1 ------------------------------------------------------------
consensus_6619#0 TCAAAGTACCAAACTT 1455
consensus_6619#1 ----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||