These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1160 fasta sequence [AGAGCGGGAGCGGGAGCGGAAGCGGAAGGCGAAGGCGTGACGTCACCCACCGGGGAGGGAGGAGATGGAGCTGGTCTCCTCGTCGCGCTCCGTCCTTCCTCGGTGCGGCGGCGGCGGCGTTGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGTCAGAAGGAGGGCGGCCCTCGCTTTGC-TGCTGGCTTCGCCGGCGATGTCGGTGGCGTTCTCGGCTCACGGGAAGACCAAAAGCAGGAACCCTTACGACGAGAGGCGGCTGCTTCAGCAGAACAAGAAGATCCAGGAAGCCAACCGGGCTCCTGACGATTTTCCGAATTTCATCAGGGAAGGTTTCGAAGTCAAAGTAGTGACATCTGACAACTACATAACGCGAGACTCTGGGCTACTGTATGAGGACATCAAAGTTGGTACGGGCAACTCTCCAAAGGATGGTCAGCAGGTTATATTTCACTATGTGGGCTACAATGAGTCAGGGCGCAGGATAGATAGCACCTACATTCAGGGTTCACCTGCCAAAATTCGGTTAGGGAACAAAACACTGGTTCCAGGTTTTGAAGAAGGGATACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCTGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCTCGCTGTTCAGGACTGCCAACGGAGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTCTGGCCAGGCTTCAGAGTTCTTCAGAGTTGCTCCTACTGTAAATGTAAGGATGTAGCAATGACATTAATGTGATGATTGAAGGAACAAGTGAAGTAGTACGTCTTAATTATTGGCAATGGTGATGTTCGTTCTGCCATTCTTTGTCATGAATCTCATGATGTTGGGGGGCATGTGTACCTTCTGCTGCTTTTGACAAGCTGAGAGTGTACCTTGA] [+] EMBL AK067941 [AGAGCGGGAGCGGGAGCGGAAGCGGAAGGCGAAGGCGTGACGTCACCCACCGGGGAGGGAGGAGATGGAGCTGGTCTCCTCGTCGCGCTCCGTCCTTCCTCGGTGCGGCGGCGGCGGCGTTGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGGGACGGTCAGAAGGAGGGCGGCCCTCGCTTTGC TGCTGGCTTCGCCGGCGATGTCGGTGGCGTTCTCGGCTCACGGGAAGACCAAAAGCAGGAACCCTTACGACGAGAGGCGGCTGCTTCAGCAGAACAAGAAGATCCAGGAAGCCAACCGGGCTCCTGACGATTTTCCGAATTTCATCAGGGAAGGTTTCGAAGTCAAAGTAGTGACATCTGACAACTACATAACGCGAGACTCTGGGCTACTGTATGAGGACATCAAAGTTGGTACGGGCAACTCTCCAAAGGATGGTCAGCAGGTTATATTTCACTATGTGGGCTACAATGAGTCAGGGCGCAGGATAGATAGCACCTACATTCAGGGTTCACCTGCCAAAATTCGGTTAGGGAACAAAACACTGGTTCCAGGTTTTGAAGAAGGGATACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCTGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCTCGCTGTTCAGGACTGCCAACGGAGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTCTGGCCAGGCTTCAGAGTTCTTCAGAGTTGCTCCTACTGTAAATGTAAGGATGTAGCAATGACATTAATGTGATGATTGAAGGAACAAGTGAAGTAGTACGTCTTAATTATTGGCAATGGTGATGTTCGTTCTGCCATTCTTTGTCATGAATCTCATGATGTTGGGGGGCATGTGTACCTTCTGCTGCTTTTGACAAGCTGAGAGTGTACCTTGA] [+] EMBL OSR3223A [ GAAG GNAAGGCGAAGGCGTGACGTCACCCACCGGGGAGGGAGGAGATGGAGCTGGTCTCCTCGTCGCGCTCCGTCCTTCCTCGGTGCGGCGGCGGCGGCGTTGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGACGAGCGGATTCGTGTGTCCTTTGGGTTGCNATGGTGAGGGGAAGAAGAGCGTNGCGGAGGGGACGGTCAGAAGGAGGGCGGCCCTCGCTTTGCTTGCTGGCTTCGCCGGCGATGTCGGTGGCGTTCTCGGCTCACGGGAAGACCAAAAGCAGGAACCCTTACGA ] [+] EMBL AU173465 [ ACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCCTGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCTCGCTGTTCAGGACTGCCAACGGAGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTCTGGCCAGGCTTCAGAGTTCTTCAGAGTTGCTCCTACTGTAAATGTAAGGATGTAGCAATGACATTAATGTGATGATTGAAGGAACAAGTGAAGTAGTACGTCTTAATTATTGGCAATGGTGATGTTCGTTCTGCCATTaaaaaa ] consensusID : consensus_6622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [AGAGGCCGAGCCAAGGGGGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGTTCATCAAATCTCCAATTGGGGTGTGCTGGTAAAGATGATCCTCAAATCTCCAATTGGGGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTTTGGCCAGGCTTCAGAGTTTTTCAGAGCTGCTCCTCCTGTAAATGTAAGGATGTAGCAATGCCCTTAATGTGATGATTGAAGGAACAAATGAAGTAGTACGTTTTAATTATTGGCAATGGTGATGTTCGTTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA761567 [AGAGGCCGAGCCAAGGGGGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCTGAGCAAAAGATGTTCATCAAATCTCCAATTGGGGTGTGCTGGTAAAGATGATCCTCAAATCTCCAATTGGGGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTTTGGCCAGGCTTCAGAGTTTTTCAGAGCTGCTCCTCCTGTAAATGTAAGGATGTAGCAATGCCCTTAATGTGATGATTGAAGGAACAAATGAAGTAGTACGTTTTAATTATTGGCAATGGTGATGTTCGTTTTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6622#0 AGAGCGGGAGCGGGAGCGGAAGCGGAAGGCGAAGGCGTGACGTCACCCACCGGGGAGGGA 60 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 GGAGATGGAGCTGGTCTCCTCGTCGCGCTCCGTCCTTCCTCGGTGCGGCGGCGGCGGCGT 120 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 TGCAGGTGTAGCTGCTGCTCCGTTCAGGACGGCGTCCGCCAGCTCGAGGCGCAAGGGGAC 180 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 GAGCGGATTCGTGTGTGCTTTGGGTTGCGATGGTGAGGGGAAGAAGAGCGTGGCGGAGGG 240 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 GACGGTCAGAAGGAGGGCGGCCCTCGCTTTGCTGCTGGCTTCGCCGGCGATGTCGGTGGC 300 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 GTTCTCGGCTCACGGGAAGACCAAAAGCAGGAACCCTTACGACGAGAGGCGGCTGCTTCA 360 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 GCAGAACAAGAAGATCCAGGAAGCCAACCGGGCTCCTGACGATTTTCCGAATTTCATCAG 420 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 GGAAGGTTTCGAAGTCAAAGTAGTGACATCTGACAACTACATAACGCGAGACTCTGGGCT 480 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 ACTGTATGAGGACATCAAAGTTGGTACGGGCAACTCTCCAAAGGATGGTCAGCAGGTTAT 540 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 ATTTCACTATGTGGGCTACAATGAGTCAGGGCGCAGGATAGATAGCACCTACATTCAGGG 600 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 TTCACCTGCCAAAATTCGGTTAGGGAACAAAACACTGGTTCCAGGTTTTGAAGAAGGGAT 660 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 ACGGGACATGAAACCAGGTGGTAAGAGAAGAATTATTATACCTCCAGAGCTTGGTCCTCC 720 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 TGTTGGGCCGTCAACATTCTTCAGTGCGAAGCAGTTCGAGGTATTCGACATCGAACTCCT 780 consensus_6622#1 ------------------------------------------------------------ consensus_6622#0 CGCTGTTCAGGACT-GCCAACGGAGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCT 839 consensus_6622#1 ------AGAGGCCGAGCCAAGGGGGAACAATAGCCTTTTACTCCGATGTAGTGTGCAGCT 54 *** * ***** ** ************************************ consensus_6622#0 GAGCAAAAGATGATCATCAAATCTCCAATTGGTGTGTGCTGGTAAAGATGATCATCAAAT 899 consensus_6622#1 GAGCAAAAGATGTTCATCAAATCTCCAATTGGGGTGTGCTGGTAAAGATGATCCTCAAAT 114 ************ ******************* ******************** ****** consensus_6622#0 CTCCAATTGGTGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTCTGGCCAGGCTTCA 959 consensus_6622#1 CTCCAATTGGGGTGTGCTGGTAAATGTAAGGAAAAGATTTTTGTTTTTGGCCAGGCTTCA 174 ********** *********************************** ************* consensus_6622#0 GAGTTCTTCAGAGTTGCTCCTACTGTAAATGTAAGGATGTAGCAATGACATTAATGTGAT 1019 consensus_6622#1 GAGTTTTTCAGAGCTGCTCCTCCTGTAAATGTAAGGATGTAGCAATGCCCTTAATGTGAT 234 ***** ******* ******* ************************* * ********** consensus_6622#0 GATTGAAGGAACAAGTGAAGTAGTACGTCTTAATTATTGGCAATGGTGATGTTCGTTCTG 1079 consensus_6622#1 GATTGAAGGAACAAATGAAGTAGTACGTTTTAATTATTGGCAATGGTGATGTTCGTTTTG 294 ************** ************* **************************** ** consensus_6622#0 CCATTCTTTGTCATGAATCTCATGATGTTGGGGGGCATGTGTACCTTCTGCTGCTTTTGA 1139 consensus_6622#1 CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------------------- 331 *** * ** * * * consensus_6622#0 CAAGCTGAGAGTGTACCTTGA 1160 consensus_6622#1 --------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||