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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6624 cluster # 6624       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6624#0 length = 309 sequences # 3  
consensus_6624#1 length = 291 sequences # 1  

consensusID : consensus_6624#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 309
fasta sequence
                              [TTGAGATTNCCGTCGTTCGGCTCGGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCGAGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCACAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGTTAAAAAAAA]

[+] EMBL AU058090             [TTGAGATTNCCGTCGTTCGGCTCGGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCGAGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCACAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGTTAAAAAAAA]
[+] EMBL AU197464             [                       GGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCGAGATCANGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCACAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGTTAAAAA   ]
[+] EMBL OSC8061              [                       GGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCGAGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCACAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTC                  ]


>consensus_6624#0 TTGAGATTNCCGTCGTTCGGCTCGGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTG TATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCG AGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCA CAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTA CTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGT TAAAAAAAA



consensusID : consensus_6624#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 291
fasta sequence
                              [GACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTNTGCCCCCCTGATCATNGCAAGTNTAATGCGAGATCAGGGGGCGCTCGACGTNTCACAATACCTTTGGTTNTCAAAAGGAAGAGTNTNCCNCAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTNCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTNCCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU096173             [GACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTNTGCCCCCCTGATCATNGCAAGTNTAATGCGAGATCAGGGGGCGCTCGACGTNTCACAATACCTTTGGTTNTCAAAAGGAAGAGTNTNCCNCAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTNCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTNCCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_6624#1 GACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTNTGCCC CCCTGATCATNGCAAGTNTAATGCGAGATCAGGGGGCGCTCGACGTNTCACAATACCTTT GGTTNTCAAAAGGAAGAGTNTNCCNCAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTG TTTNCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTNCCC TCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6624#0      TTGAGATTNCCGTCGTTCGGCTCGGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTG 60
consensus_6624#1      -----------------------------------GACATCTGAGTGTGTTGAGTGTGTG 25
                                                         *************************

consensus_6624#0      TATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCG 120
consensus_6624#1      TATGTTTTGTGTCGGATCGATGATGATGTNTGCCCCCCTGATCATNGCAAGTNTAATGCG 85
                      ***************************** *************** ****** *******

consensus_6624#0      AGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCA 180
consensus_6624#1      AGATCAGGGGGCGCTCGACGTNTCACAATACCTTTGGTTNTCAAAAGGAAGAGTNTNCCN 145
                      ********************* ***************** ************** * ** 

consensus_6624#0      CAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTA 240
consensus_6624#1      CAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTNCCGTGCGTGGAGTGAGTGCTA 205
                      ************************************** *********************

consensus_6624#0      CTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGT 300
consensus_6624#1      CTGCTGTAAAAGACGAAAATATGCATAGTTTNCCCTCCAAAAAAAAAAAAAAAAAAAAAA 265
                      ******************************* ******             *   ***  

consensus_6624#0      TAAAAAAAA----------------- 309
consensus_6624#1      AAAAAAAAAAAAAAAAAAAAAAAAAA 291
                       ********                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)