These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 309 fasta sequence [TTGAGATTNCCGTCGTTCGGCTCGGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCGAGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCACAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGTTAAAAAAAA] [+] EMBL AU058090 [TTGAGATTNCCGTCGTTCGGCTCGGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCGAGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCACAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGTTAAAAAAAA] [+] EMBL AU197464 [ GGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCGAGATCANGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCACAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGTTAAAAA ] [+] EMBL OSC8061 [ GGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCGAGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCACAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTC ] consensusID : consensus_6624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [GACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTNTGCCCCCCTGATCATNGCAAGTNTAATGCGAGATCAGGGGGCGCTCGACGTNTCACAATACCTTTGGTTNTCAAAAGGAAGAGTNTNCCNCAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTNCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTNCCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU096173 [GACATCTGAGTGTGTTGAGTGTGTGTATGTTTTGTGTCGGATCGATGATGATGTNTGCCCCCCTGATCATNGCAAGTNTAATGCGAGATCAGGGGGCGCTCGACGTNTCACAATACCTTTGGTTNTCAAAAGGAAGAGTNTNCCNCAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTNCCGTGCGTGGAGTGAGTGCTACTGCTGTAAAAGACGAAAATATGCATAGTTTNCCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6624#0 TTGAGATTNCCGTCGTTCGGCTCGGTCTCCTATTAGACATCTGAGTGTGTTGAGTGTGTG 60 consensus_6624#1 -----------------------------------GACATCTGAGTGTGTTGAGTGTGTG 25 ************************* consensus_6624#0 TATGTTTTGTGTCGGATCGATGATGATGTCTGCCCCCCTGATCATAGCAAGTGTAATGCG 120 consensus_6624#1 TATGTTTTGTGTCGGATCGATGATGATGTNTGCCCCCCTGATCATNGCAAGTNTAATGCG 85 ***************************** *************** ****** ******* consensus_6624#0 AGATCAGGGGGCGCTCGACGTCTCACAATACCTTTGGTTGTCAAAAGGAAGAGTCTACCA 180 consensus_6624#1 AGATCAGGGGGCGCTCGACGTNTCACAATACCTTTGGTTNTCAAAAGGAAGAGTNTNCCN 145 ********************* ***************** ************** * ** consensus_6624#0 CAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTGCCGTGCGTGGAGTGAGTGCTA 240 consensus_6624#1 CAATGTTTTGTTTTGTGCCTTGGGTTGCAGATGTGTTTNCCGTGCGTGGAGTGAGTGCTA 205 ************************************** ********************* consensus_6624#0 CTGCTGTAAAAGACGAAAATATGCATAGTTTACCCTCCTTTCCTCTTCTTCACTGAAAGT 300 consensus_6624#1 CTGCTGTAAAAGACGAAAATATGCATAGTTTNCCCTCCAAAAAAAAAAAAAAAAAAAAAA 265 ******************************* ****** * *** consensus_6624#0 TAAAAAAAA----------------- 309 consensus_6624#1 AAAAAAAAAAAAAAAAAAAAAAAAAA 291 ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||