These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6628#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1397 fasta sequence [ACATATTCTATGACATCTCACATGGTCGTGAATCTCATAGAGGTGGGTCATCTTCGTACCAGAATGTTCATGAAGCACAGTTTGTTTTGCGTTTGTATGAGAATCTTCAGAAGTTCTTGAGAGCTAATGGTGGCAAGAAAGCTTCTGTTGGTATAATCACACCATATAAGTTGCAGTTGAAATGTCTTCAGCGGGAATTCGAGGAGGTTATGAGTACTGAGGATGGGAAGGACATTTACATAAACACAGTTGATGCTTTTCAAGGACAGGAGCGTGATGTGATTATTATGTCATGTGTCCGTGCCTCAAATCATGGTGTGGGTTTTGTGGCAGATATACGCCGTATGAATGTTGCTCTTACTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGGACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCATTCCCAAGGACTTCCTTGCCATGAAGATCTCTAACACTCCAGGAAGGAACACTTCAAATAACATAAGGAACATGAGGACTGGTGGACCAAGACCGAGGCATTTGGAAATGCTTCCAGATTCCAGGGTTAGCATGAGGCCTGATGAGGATGAACGTTCTAACTCTGTTCCGAGAAATGGCAGTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTTTTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGNTCAAGAAGAGAAGTGTAAAGAATGCACTGCTGTAACTGNACATTTGCTTGGTCTGNGCAGCCCTGGACAGTCTTGGATGGACAAGGNGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATGGGATGGTGATGGGAAGGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGGGTTGTAAGCCTCAGGTGCCTGTACCTAGAGATGGCATTTTGTTGGATGGGTGCCTCAT--GGAACAAAGTTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGACCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTTTAGCATGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGGCATTTTCATTTTGAAAACATGCCGGGAGAAAAACAACTCTCACTGGCTCTAGAGCAGGTTAGGTTTCAAGCTTTTGTTGCAAGATTGCTGCTGCAGCGAACATTCATGCTTGATATGTCCTGTAGGATTTATGCTAACATAGGCAGGGCTTTTGTAACATATGACATAAGCTCCCTCTGTATACAAAATCCGCATCTAGAAAAGTTGAT] [+] EMBL CA765493 [ACATATTCTATGACATCTCACATGGTCGTGAATCTCATAGAGGTGGGTCATCTTCGTACCAGAATGTTCATGAAGCACAGTTTGTTTTGCGTTTGTATGAGAATCTTCAGAAGTTCTTGAGAGCTAATGGTGGCAAGAAAGCTTCTGTTGGTATAATCACACCATATAAGTTGCAGTTGAAATGTCTTCAGCGGGAATTCGAGGAGGTTATGAGTACTGAGGATGGGAAGGACATTTACATAAACACAGTTGATGCTTTTCAAGGACAGGAGCGTGATGTGATTATTATGTCATGTGTCCGTGCCTCAAATCATGGTGTGGGTTTTGTGGCAGATATACGCCGTATGAATGTTGCTCTTACTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGGACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCATTCCCAAGGACTTCCTTGCCATGAAGATCTCTAACACTCCAGGAAGGAACACTTCAAATAACATAAGGAACATGAGGACTGGTGGACCAAGACCGAGGCATTTGGAAATGCTTCCAGATTCCAGGGTTAGCATGAGGCCTGATGAGGATGAACGTTCTAACTCTGTTCCGAGAAATGGCAGTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTTTTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGNTCAAGAAGAGAAGTGTAAAGAATGCACTGCTGTAACTGNACATTTGCTTGGTCTGNGCAGCCCTGGACAGTCTTGGATGGACAAGGNG ] [+] EMBL AK070076 [ TGGGTTTCGTGGCAGATATACGCCGTATGAATGTTGCTCTTACTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGGACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCATTCCCAAGGACTTCCTTGCCATGAAGATCTCTAACACTCCAGGAAGGAACACTTCAAATAACATAAGGAACATGAGGACTGGTGGACCAAGACCGAGGCATTTGGAAATGCTTCCAGATTCCAGGGTTAGCATGAGGCCTGATGAGGATGAACGTTCTAACTCTGTTCCGAGAAATGGCAGTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTTTTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGTTCAAGAAGAGAAGTGTAAAGAATGCACTGCTGTAACTGTACATTTGCTTGGTCTGTGCAGCCCTGGACAGTCTTGGATGGACAAGGTGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATGGGATGGTGATGGGAAGGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGGGTTGTAAGCCTCAGGTGCCTGTACCTAGAGATGGCATTTTGTTGGATGGGTGCCTCAT GGAACAAAGTTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGACCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTTTAGCATGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGGCATTTTCATTTTGAAAACATGCCGGGAGAAAAACAACTCTCACTGGCTCTAGAGCAGGTTAGGTTTCAAGCTTTTGTTGCAAGATTGCTGCTGCAGCGAACATTCATGCTTGATATGTCCTGTAGGATTTATGCTAACATAGGCAGGGCTTTTGTAACATATGACATAAGCTCCCTCTGTATACAAAATCCGCATCTAGAAAAGTTGAT] [+] EMBL AA749879 [ GTGCCTCATGGGGAACAAAGCTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGACCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTTTAGACTGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGG A C TTTTG AAACATGCC GGAGAAAAcatg ] consensusID : consensus_6628#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1207 fasta sequence [TTCATGAAGCACAGTTTGTTTTGCGTTTGTATGAGAATCTTCAGAAGTTCTTGAGAGCTAATGGTGGCAAGAAAGCTTCTGTTGGTATAATCACACCATATAAGTTGCAGTTGAAATGTCTTCAGCGGGAATTCGAGGAGGTTATGAGTACTGAGGATGGGAAGGACATTTACATAAACACAGTTGATGCTTTTCAAGGACAGGAGCGTGATGTGATTATTATGTCATGTGTCCGTGCCTCAAATCATGGTGTGGGTTTCGTGGCAGATATACGCCGTATGAATGTTGCTCTTACTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGGACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCATTCCCAAGGACTTCCTTGCCATGAAGATCTCTAACTCTGTTCCGAGAAATGGCAGTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTTTTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGTTCAAGAAGAGAAGTGTAAAGAATGCACTGCTGTAACTGTACATTTGCTTGGTCTGTGCAGCCCTGGACAGTCTTGGATGGACAAGGTGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATGGGATGGTGATGGGAAGGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGGGTTGTAAGCCTCAGGTGCCTGTACCTAGAGATGGCATTTTGTTGGATGGGTGCCTCATGGAACAAAGTTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGACCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTTTAGCATGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGGCATTTTCATTTTGAAAACATGCCGGGAGAAAAACAACTCTCACTGGCTCTAGAGCAGGTTAGGTTTCAAGCTTTTGTTGCAAGATTGCTGCTGCAGCGAACATTCATGCTTGATATGTCCTGTAGGATTAGTATGCTAACATAGGCAGGGCTTTTGTAACATATGACATAAGCTCCCTCTGTATACAAAATCCGCATCTAGAAAAGTTGAT] [+] EMBL AK058386 [TTCATGAAGCACAGTTTGTTTTGCGTTTGTATGAGAATCTTCAGAAGTTCTTGAGAGCTAATGGTGGCAAGAAAGCTTCTGTTGGTATAATCACACCATATAAGTTGCAGTTGAAATGTCTTCAGCGGGAATTCGAGGAGGTTATGAGTACTGAGGATGGGAAGGACATTTACATAAACACAGTTGATGCTTTTCAAGGACAGGAGCGTGATGTGATTATTATGTCATGTGTCCGTGCCTCAAATCATGGTGTGGGTTTCGTGGCAGATATACGCCGTATGAATGTTGCTCTTACTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGGACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCATTCCCAAGGACTTCCTTGCCATGAAGATCTCTAACTCTGTTCCGAGAAATGGCAGTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTTTTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGTTCAAGAAGAGAAGTGTAAAGAATGCACTGCTGTAACTGTACATTTGCTTGGTCTGTGCAGCCCTGGACAGTCTTGGATGGACAAGGTGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATGGGATGGTGATGGGAAGGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGGGTTGTAAGCCTCAGGTGCCTGTACCTAGAGATGGCATTTTGTTGGATGGGTGCCTCATGGAACAAAGTTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGACCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTTTAGCATGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGGCATTTTCATTTTGAAAACATGCCGGGAGAAAAACAACTCTCACTGGCTCTAGAGCAGGTTAGGTTTCAAGCTTTTGTTGCAAGATTGCTGCTGCAGCGAACATTCATGCTTGATATGTCCTGTAGGATTAGTATGCTAACATAGGCAGGGCTTTTGTAACATATGACATAAGCTCCCTCTGTATACAAAATCCGCATCTAGAAAAGTTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6628#0 ACATATTCTATGACATCTCACATGGTCGTGAATCTCATAGAGGTGGGTCATCTTCGTACC 60 consensus_6628#1 ------------------------------------------------------------ consensus_6628#0 AGAATGTTCATGAAGCACAGTTTGTTTTGCGTTTGTATGAGAATCTTCAGAAGTTCTTGA 120 consensus_6628#1 ------TTCATGAAGCACAGTTTGTTTTGCGTTTGTATGAGAATCTTCAGAAGTTCTTGA 54 ****************************************************** consensus_6628#0 GAGCTAATGGTGGCAAGAAAGCTTCTGTTGGTATAATCACACCATATAAGTTGCAGTTGA 180 consensus_6628#1 GAGCTAATGGTGGCAAGAAAGCTTCTGTTGGTATAATCACACCATATAAGTTGCAGTTGA 114 ************************************************************ consensus_6628#0 AATGTCTTCAGCGGGAATTCGAGGAGGTTATGAGTACTGAGGATGGGAAGGACATTTACA 240 consensus_6628#1 AATGTCTTCAGCGGGAATTCGAGGAGGTTATGAGTACTGAGGATGGGAAGGACATTTACA 174 ************************************************************ consensus_6628#0 TAAACACAGTTGATGCTTTTCAAGGACAGGAGCGTGATGTGATTATTATGTCATGTGTCC 300 consensus_6628#1 TAAACACAGTTGATGCTTTTCAAGGACAGGAGCGTGATGTGATTATTATGTCATGTGTCC 234 ************************************************************ consensus_6628#0 GTGCCTCAAATCATGGTGTGGGTTTTGTGGCAGATATACGCCGTATGAATGTTGCTCTTA 360 consensus_6628#1 GTGCCTCAAATCATGGTGTGGGTTTCGTGGCAGATATACGCCGTATGAATGTTGCTCTTA 294 ************************* ********************************** consensus_6628#0 CTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGG 420 consensus_6628#1 CTAGAGCTAGGAGAGCTCTATGGGTTGTTGGTAATGCCGGTGCTCTTATGCAGTCTGAGG 354 ************************************************************ consensus_6628#0 ACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCA 480 consensus_6628#1 ACTGGGCTTTACTGATAGCAGATGCAAAGGCCAGGAAATGTTTTATGGATCTTGATACCA 414 ************************************************************ consensus_6628#0 TTCCCAAGGACTTCCTTGCCATGAAGATCTCTAACACTCCAGGAAGGAACACTTCAAATA 540 consensus_6628#1 TTCCCAAGGACTTCCTTGCCATGAAGATCTCTAAC------------------------- 449 *********************************** consensus_6628#0 ACATAAGGAACATGAGGACTGGTGGACCAAGACCGAGGCATTTGGAAATGCTTCCAGATT 600 consensus_6628#1 ------------------------------------------------------------ consensus_6628#0 CCAGGGTTAGCATGAGGCCTGATGAGGATGAACGTTCTAACTCTGTTCCGAGAAATGGCA 660 consensus_6628#1 -----------------------------------------TCTGTTCCGAGAAATGGCA 468 ******************* consensus_6628#0 GTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTT 720 consensus_6628#1 GTTACAGAAATTTGGATGATCTGGGACGTCCTGGTGATAGGTCTAGAGATAATTTGCCTT 528 ************************************************************ consensus_6628#0 TTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGNTCAAGAAGAGAAGTGTAAAGAATGC 780 consensus_6628#1 TTGGAATGCCTAGGAGGCCGAATTCGTCGAATGGTTCAAGAAGAGAAGTGTAAAGAATGC 588 ********************************** ************************* consensus_6628#0 ACTGCTGTAACTGNACATTTGCTTGGTCTGNGCAGCCCTGGACAGTCTTGGATGGACAAG 840 consensus_6628#1 ACTGCTGTAACTGTACATTTGCTTGGTCTGTGCAGCCCTGGACAGTCTTGGATGGACAAG 648 ************* **************** ***************************** consensus_6628#0 GNGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATGGGATGGTGATGGGAA 900 consensus_6628#1 GTGGCGTCTATTCAGAAGATGTGCACTTGGCTCTACCGGTGGATGGGATGGTGATGGGAA 708 * ********************************************************** consensus_6628#0 GGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGG 960 consensus_6628#1 GGTGTTGGTATTCACAACACCAGACGATTGATTATGAAACCAAGCCTCTAGTGACAATGG 768 ************************************************************ consensus_6628#0 GTTGTAAGCCTCAGGTGCCTGTACCTAGAGATGGCATTTTGTTGGATGGGTGCCTCATGG 1020 consensus_6628#1 GTTGTAAGCCTCAGGTGCCTGTACCTAGAGATGGCATTTTGTTGGATGGGTGCCTCATGG 828 ************************************************************ consensus_6628#0 AACAAAGTTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGA 1080 consensus_6628#1 AACAAAGTTGCTTCATGTCGTCAGTGTTTCGAAACATCACAGGATTTCCATATCTAGTGA 888 ************************************************************ consensus_6628#0 CCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTT 1140 consensus_6628#1 CCAGAATTGAGCAAGGTGTCAGCTGGACAGATTATGCCTGACATTGCAATGCTTGCTTTT 948 ************************************************************ consensus_6628#0 TAGCATGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGGCATTTTCATTTT 1200 consensus_6628#1 TAGCATGCTTTAACAGAACCTATCATCTCATAGATATACATGCATGGGCATTTTCATTTT 1008 ************************************************************ consensus_6628#0 GAAAACATGCCGGGAGAAAAACAACTCTCACTGGCTCTAGAGCAGGTTAGGTTTCAAGCT 1260 consensus_6628#1 GAAAACATGCCGGGAGAAAAACAACTCTCACTGGCTCTAGAGCAGGTTAGGTTTCAAGCT 1068 ************************************************************ consensus_6628#0 TTTGTTGCAAGATTGCTGCTGCAGCGAACATTCATGCTTGATATGTCCTGTAGGATT--T 1318 consensus_6628#1 TTTGTTGCAAGATTGCTGCTGCAGCGAACATTCATGCTTGATATGTCCTGTAGGATTAGT 1128 ********************************************************* * consensus_6628#0 ATGCTAACATAGGCAGGGCTTTTGTAACATATGACATAAGCTCCCTCTGTATACAAAATC 1378 consensus_6628#1 ATGCTAACATAGGCAGGGCTTTTGTAACATATGACATAAGCTCCCTCTGTATACAAAATC 1188 ************************************************************ consensus_6628#0 CGCATCTAGAAAAGTTGAT 1397 consensus_6628#1 CGCATCTAGAAAAGTTGAT 1207 ******************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||