These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 514 fasta sequence [CTGTTTGTGGAGCAAATACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATGGAACCGCTCACGGTCGATTGATCTGACAAGC-AAAACTGCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCGATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGGCGCCCCATAAAATCACCTGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACCATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACCTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACTGTCCGCTCAAAAA] [+] EMBL AA750728 [CTGTTTGTGGAGCAAATACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATGGAACCGCTCACGGTCGATTGATCTGACAAGC AAAACTGCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCGATTACTC CAGGTAGATTGGAATTGGATCATGGCTGGATGGATGA ] [+] EMBL CA767514 [ TACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATGGAACCGCTCACGGTCGATTGATCTGACAAGC AAAACCGCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCGATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGGCGCCCCATAAAATCACCTGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACCATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACCTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACT ] [+] EMBL AU029707 [ AACTGTGGTGGAACATGCAATCCTTGCGGCAATCCTATGNACCCGCTCACGGTCGATTGATCTGACAAGCAAAAACTGCAATCACTTCTTTCTACATGTTTATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCGATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGGCGCCCCATAAAATCACCTGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACCATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACCTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCNGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACTGTCCGCTCAAAAA] consensusID : consensus_6646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [ATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTTAAGTGACAAAGGCAATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGACGGCGCCCCATAAAATCACCTGGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACACATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACACTCCAACTCCCAACGTACCCCAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACTGTCAAAAAAAAAA] [+] EMBL BI795167 [ATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTTAAGTGACAAAGGCAATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGACGGCGCCCCATAAAATCACCTGGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGATATGATATTGATAGATCATCGTCGGCACACATCATTCCTCTGAAAGATTTCGCACGGCATTTCAACACTCCAACTCCCAACGTACCCCAAAAAGTAACTAGGCCAGGTGAGCATCTGCTAGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATCATCATAATAAAGCTCTGGGTTACTGTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6646#0 CTGTTTGTGGAGCAAATACGCAACTGTGGTGGGACATGCAATCCTTGCGGCAATCCTATG 60 consensus_6646#1 ------------------------------------------------------------ consensus_6646#0 GAACCGCTCACGGTCGATTGATCTGACAAGCAAAACTGCAATCACTTCTTTCTACATGTT 120 consensus_6646#1 ------------------------------------------------------------ consensus_6646#0 TATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTGTAAGGTGACAAAGGCG 180 consensus_6646#1 -ATCTGGAAGCTGTTCTACGCGGAATACCTTCTCATTCCTCTTT--AAGTGACAAAGGCA 57 ****************************************** * *********** consensus_6646#0 ATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACGGACGG 240 consensus_6646#1 ATTACTCCAGGGACGCAGGTAGATTGGAATTGGATCATGGCTGGATGGATGAACG-ACGG 116 ******************************************************* **** consensus_6646#0 CGCCCCATAAAATCACCTG-CAAATCACCCGGTACACATGTTGACATCCTGCATCCAGAT 299 consensus_6646#1 CGCCCCATAAAATCACCTGGCAAATCACCCGGTACACATGTTGACATCCTGCATCCAGAT 176 ******************* **************************************** consensus_6646#0 ATGATATTGATAGATCATCGTCGGCAC-CATCATTCCTCTGAAAGATTTCGCACGGCATT 358 consensus_6646#1 ATGATATTGATAGATCATCGTCGGCACACATCATTCCTCTGAAAGATTTCGCACGGCATT 236 *************************** ******************************** consensus_6646#0 TCAAC-CTCCAACTCCCAACGTACCCCAAAAAAAGTAACTAGGCCAGGTGAGCATCTGCT 417 consensus_6646#1 TCAACACTCCAACTCCCAACGTACCCCAAAAA--GTAACTAGGCCAGGTGAGCATCTGCT 294 ***** ************************** ************************** consensus_6646#0 AGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATC 477 consensus_6646#1 AGCCTATAGTAGACGTTATTGGAACAGTGGTAGTACTTGTTAGCAGCAGTAATAATAATC 354 ************************************************************ consensus_6646#0 ATCATAATAAAGCTCTGGGTTACTGTCCGCTCAAAAA 514 consensus_6646#1 ATCATAATAAAGCTCTGGGTTACTGTCAAAAAAAAAA 391 *************************** ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||