cluster # 6648

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Oryza sativa
cluster # 6648 cluster # 6648 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6648#0 length = 1293 sequences # 2

consensus_6648#1 length = 496 sequences # 1
consensus_6648#2 length = 316 sequences # 1

consensusID : consensus_6648#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1293
fasta sequence

                              [CCGTGTTCCTCGCTCTCTTCCCTTTCCTTTTTTTCTCTCTCTAAAATCGCAACCCACAAATCCTTCTGATCCGTTTGTGTCAGAGCCAAATCTTCTTCTTCTTCTCCATCTCTCTCCTCTCCTCTTCTCTTCTCTCGTTGGAAGGTGAGGAGGTGAGGTGAGGTTGGGGGCGCCGTTTGATGGACGCGAAGAGGACGCCGCCGCCGCCGACGCCGCCGAACCCTAACCCTAGCGTAATTGGCAGCGGCGCCGCCGCGGACGGCGGCGGATTTGGGAGGGGGGAAGCGGCGGCGGCGACGAAGCACATGCTGGCCTTCCACTTCCTGCGCGCGCTGTCGCGGATCCACCGGGCGACACCCGTGACGCGGCGCACGCGGACCATCCGCCGGGCGGCCTACTCCTCCATGGCGCGGGCGGCGAGCCCGCGCCGCGCGTGGAGCCGGGCGCTGCTCGGCCAGGTCCGCGCGCGGAGGTCCAGGACGCTGATGAGGCGCGCCGCCGTGCTGGTGCGGAGGCGCGTCGTAGCCGCTCCTGCGCCTTCTCCCGCCTCCGCCAGAGGCGTCAGGATTATTGCTGCCGGAGAGACGTCGGCGGCGGCTCGGGCTGTTCCGCCGCCTCCGCGGCAGCAGGGCGAGCCGCCGAGGGCCGAAGCGCTCCGGCGCCTGGTCCCCGGCGGCGCCGGCATGGAGTACTCCAGCCTCCTGGAGGAGACCGCCGACTACCTCCGCTCGCTTCGCGCGCAGGTGCAGCTGATGCAAGGCCTCGTCGACCTCTTCTCCTACCAATGATCCATCCATCGAGTAATTAACATATGCATCATATGGTTAATTATTTATTCGTTCGTCTTGCACGCATCACATGCTGCTGTTGCTGCTTCTGTTCTACTTCTCTACCTACATCATATCGATCTATCTCTTGTTCATGTGGATCGATCGATCGATGCATATGATGGTTGGTTAAGATAGGGGATTATTATTGGGGTAATTAAGGGGAGGATCTAGGAGATTGGGTGGAGTGTTAGTATACATGTTTTTTGTTTTTGTTGGTAATTAAGATTATTGGTAGGTGATGAAAAGATTGTTGGATACATACATCCATGTATAGAAGTATAGGCCGACCGGCTGGGAGCACAATGAATTGAATCATATATACCAAGAAGAA-GGCTTTATAGAGAGAGAGAGAGAGAGGGGTAATTAATTGTAACATATAAAGAGAAGGATGAAGTTACATATACTATATGATAGTGAATTAGTGCAGTGTTAATTGTTGTCAATTGTCAGTAAATCGATCTAT]

[+] EMBL AK109923             [CCGTGTTCCTCGCTCTCTTCCCTTTCCTTTTTTTCTCTCTCTAAAATCGCAACCCACAAATCCTTCTGATCCGTTTGTGTCAGAGCCAAATCTTCTTCTTCTTCTCCATCTCTCTCCTCTCCTCTTCTCTTCTCTCGTTGGAAGGTGAGGAGGTGAGGTGAGGTTGGGGGCGCCGTTTGATGGACGCGAAGAGGACGCCGCCGCCGCCGACGCCGCCGAACCCTAACCCTAGCGTAATTGGCAGCGGCGCCGCCGCGGACGGCGGCGGATTTGGGAGGGGGGAAGCGGCGGCGGCGACGAAGCACATGCTGGCCTTCCACTTCCTGCGCGCGCTGTCGCGGATCCACCGGGCGACACCCGTGACGCGGCGCACGCGGACCATCCGCCGGGCGGCCTACTCCTCCATGGCGCGGGCGGCGAGCCCGCGCCGCGCGTGGAGCCGGGCGCTGCTCGGCCAGGTCCGCGCGCGGAGGTCCAGGACGCTGATGAGGCGCGCCGCCGTGCTGGTGCGGAGGCGCGTCGTAGCCGCTCCTGCGCCTTCTCCCGCCTCCGCCAGAGGCGTCAGGATTATTGCTGCCGGAGAGACGTCGGCGGCGGCTCGGGCTGTTCCGCCGCCTCCGCGGCAGCAGGGCGAGCCGCCGAGGGCCGAAGCGCTCCGGCGCCTGGTCCCCGGCGGCGCCGGCATGGAGTACTCCAGCCTCCTGGAGGAGACCGCCGACTACCTCCGCTCGCTTCGCGCGCAGGTGCAGCTGATGCAAGGCCTCGTCGACCTCTTCTCCTACCAATGATCCATCCATCGAGTAATTAACATATGCATCATATGGTTAATTATTTATTCGTTCGTCTTGCACGCATCACATGCTGCTGTTGCTGCTTCTGTTCTACTTCTCTACCTACATCATATCGATCTATCTCTTGTTCATGTGGATCGATCGATCGATGCATATGATGGTTGGTTAAGATAGGGGATTATTATTGGGGTAATTAAGGGGAGGATCTAGGAGATTGGGTGGAGTGTTAGTATACATGTTTTTTGTTTTTGTTGGTAATTAAGATTATTGGTAGGTGATGAAAAGATTGTTGGATACATACATCCATGTATAGAAGTATAGGCCGACCGGCTGGGAGCACAATGAATTGAATCATATATACCAAGAAGAA GGCTTTATAGAGAGAGAGAGAGAGAGGGGTAATTAATTGTAACATATAAAGAGAAGGATGAAGTTACATATACTATATGATAGTGAATTAGTGCAGTGTTAATTGTTGTCAATTGTCAGTAAATCGATCTAT]
[+] EMBL OSS10838A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGGTTAATTATTTATTCGTTCGTCTTGCACGCATCACATGCTGCTGTTGCTGCTTCTGTTCTACTTCTCTACCTACATCATATCGATCTATCTCTTGTTCATGTGGATCGATCGATCGATGCATATGATGGTTGGTTAAGATAGGGGATTATTATTGGGGTAATTAAGGGGAGGATCTAGGAGATTGGGTGGAGTNTTAGTATACATGTTNTTTGTTTTTGTTGGTAATTAAGATTATTGGTAGGTGATGAAANGATTGTTGGATACATACANCCATGTATAGAAGTATAGGCCGACCGGCTGGGAGCACAATGAATTGAATCATATATACCAAGAAGAAGGGCTTTATA                                                                                                                           ]




>consensus_6648#0
CCGTGTTCCTCGCTCTCTTCCCTTTCCTTTTTTTCTCTCTCTAAAATCGCAACCCACAAA
TCCTTCTGATCCGTTTGTGTCAGAGCCAAATCTTCTTCTTCTTCTCCATCTCTCTCCTCT
CCTCTTCTCTTCTCTCGTTGGAAGGTGAGGAGGTGAGGTGAGGTTGGGGGCGCCGTTTGA
TGGACGCGAAGAGGACGCCGCCGCCGCCGACGCCGCCGAACCCTAACCCTAGCGTAATTG
GCAGCGGCGCCGCCGCGGACGGCGGCGGATTTGGGAGGGGGGAAGCGGCGGCGGCGACGA
AGCACATGCTGGCCTTCCACTTCCTGCGCGCGCTGTCGCGGATCCACCGGGCGACACCCG
TGACGCGGCGCACGCGGACCATCCGCCGGGCGGCCTACTCCTCCATGGCGCGGGCGGCGA
GCCCGCGCCGCGCGTGGAGCCGGGCGCTGCTCGGCCAGGTCCGCGCGCGGAGGTCCAGGA
CGCTGATGAGGCGCGCCGCCGTGCTGGTGCGGAGGCGCGTCGTAGCCGCTCCTGCGCCTT
CTCCCGCCTCCGCCAGAGGCGTCAGGATTATTGCTGCCGGAGAGACGTCGGCGGCGGCTC
GGGCTGTTCCGCCGCCTCCGCGGCAGCAGGGCGAGCCGCCGAGGGCCGAAGCGCTCCGGC
GCCTGGTCCCCGGCGGCGCCGGCATGGAGTACTCCAGCCTCCTGGAGGAGACCGCCGACT
ACCTCCGCTCGCTTCGCGCGCAGGTGCAGCTGATGCAAGGCCTCGTCGACCTCTTCTCCT
ACCAATGATCCATCCATCGAGTAATTAACATATGCATCATATGGTTAATTATTTATTCGT
TCGTCTTGCACGCATCACATGCTGCTGTTGCTGCTTCTGTTCTACTTCTCTACCTACATC
ATATCGATCTATCTCTTGTTCATGTGGATCGATCGATCGATGCATATGATGGTTGGTTAA
GATAGGGGATTATTATTGGGGTAATTAAGGGGAGGATCTAGGAGATTGGGTGGAGTGTTA
GTATACATGTTTTTTGTTTTTGTTGGTAATTAAGATTATTGGTAGGTGATGAAAAGATTG
TTGGATACATACATCCATGTATAGAAGTATAGGCCGACCGGCTGGGAGCACAATGAATTG
AATCATATATACCAAGAAGAAGGCTTTATAGAGAGAGAGAGAGAGAGGGGTAATTAATTG
TAACATATAAAGAGAAGGATGAAGTTACATATACTATATGATAGTGAATTAGTGCAGTGT
TAATTGTTGTCAATTGTCAGTAAATCGATCTAT

consensusID : consensus_6648#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 496
fasta sequence

                              [AATTAACATATCCATCATATGTTAATTATTTCTTCGTTCNTCTTGCACGCATCACATGCTGCTGTTGCTGCTTCTGTTCTACTTCTCTACCTACATCATATCGATCTATCTCTTGTTCATGTGGATCGATCGATCGATGCATATGACGATCTATCTCTTGTTCATGTGGATCGATCGATCGATGCATATGATGGTTGGTTAAGATAGGGGATTATTATTGGGGTAATTAAGGGGAGGATCTAGGAGATTGGGTGGAGTGTTAGTATACATGTTTTTGTTTTTGTTGGTAATTAAGATTATTGGTAGGTGATGAAAAGATTGTTGGATACATACATCCATGTATAGAAGTATAGGCCGACCGGCTGGGAGCACATGAATTGAATCATATATACCCAGAAGAAGGCTTTATAGAGAGAGAGAGAGGGGTAATTAATTGTAACATATAAAGAGAAGGATGAAGTTGCATATACTATATGATAGTGAATTTAGTCCAAAA]

[+] EMBL BM421411             [AATTAACATATCCATCATATGTTAATTATTTCTTCGTTCNTCTTGCACGCATCACATGCTGCTGTTGCTGCTTCTGTTCTACTTCTCTACCTACATCATATCGATCTATCTCTTGTTCATGTGGATCGATCGATCGATGCATATGACGATCTATCTCTTGTTCATGTGGATCGATCGATCGATGCATATGATGGTTGGTTAAGATAGGGGATTATTATTGGGGTAATTAAGGGGAGGATCTAGGAGATTGGGTGGAGTGTTAGTATACATGTTTTTGTTTTTGTTGGTAATTAAGATTATTGGTAGGTGATGAAAAGATTGTTGGATACATACATCCATGTATAGAAGTATAGGCCGACCGGCTGGGAGCACATGAATTGAATCATATATACCCAGAAGAAGGCTTTATAGAGAGAGAGAGAGGGGTAATTAATTGTAACATATAAAGAGAAGGATGAAGTTGCATATACTATATGATAGTGAATTTAGTCCAAAA]




>consensus_6648#1
AATTAACATATCCATCATATGTTAATTATTTCTTCGTTCNTCTTGCACGCATCACATGCT
GCTGTTGCTGCTTCTGTTCTACTTCTCTACCTACATCATATCGATCTATCTCTTGTTCAT
GTGGATCGATCGATCGATGCATATGACGATCTATCTCTTGTTCATGTGGATCGATCGATC
GATGCATATGATGGTTGGTTAAGATAGGGGATTATTATTGGGGTAATTAAGGGGAGGATC
TAGGAGATTGGGTGGAGTGTTAGTATACATGTTTTTGTTTTTGTTGGTAATTAAGATTAT
TGGTAGGTGATGAAAAGATTGTTGGATACATACATCCATGTATAGAAGTATAGGCCGACC
GGCTGGGAGCACATGAATTGAATCATATATACCCAGAAGAAGGCTTTATAGAGAGAGAGA
GAGGGGTAATTAATTGTAACATATAAAGAGAAGGATGAAGTTGCATATACTATATGATAG
TGAATTTAGTCCAAAA

consensusID : consensus_6648#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 316
fasta sequence

                              [AGAGGACGAGACAAGGGGAGGATCTAGGAGATTGGGTGGAGTGTTAGTATACATGTTTTTGTTTTTGTTGGTAATTAAGATTATTGGTAGGTGATGAAAAGATTGTTGGATACATACATCCATGTATAGAAGTATAGGCCGACCGGCTGGGAGCCCAATGAATTGAATCATATATACCAAGAAGAAGGCTTTATAGAGAGAGAGAGAGGGGTAATTAATTGTAACATATAAAGAGAAGGATGAAGTTGCATATACTATATGATAGTGAATTAGTGCAGTGTTAATTATTGTCAATTGTCAGTAAAAAAAAAAAAAA]

[-] EMBL CA761395             [AGAGGACGAGACAAGGGGAGGATCTAGGAGATTGGGTGGAGTGTTAGTATACATGTTTTTGTTTTTGTTGGTAATTAAGATTATTGGTAGGTGATGAAAAGATTGTTGGATACATACATCCATGTATAGAAGTATAGGCCGACCGGCTGGGAGCCCAATGAATTGAATCATATATACCAAGAAGAAGGCTTTATAGAGAGAGAGAGAGGGGTAATTAATTGTAACATATAAAGAGAAGGATGAAGTTGCATATACTATATGATAGTGAATTAGTGCAGTGTTAATTATTGTCAATTGTCAGTAAAAAAAAAAAAAA]




>consensus_6648#2
AGAGGACGAGACAAGGGGAGGATCTAGGAGATTGGGTGGAGTGTTAGTATACATGTTTTT
GTTTTTGTTGGTAATTAAGATTATTGGTAGGTGATGAAAAGATTGTTGGATACATACATC
CATGTATAGAAGTATAGGCCGACCGGCTGGGAGCCCAATGAATTGAATCATATATACCAA
GAAGAAGGCTTTATAGAGAGAGAGAGAGGGGTAATTAATTGTAACATATAAAGAGAAGGA
TGAAGTTGCATATACTATATGATAGTGAATTAGTGCAGTGTTAATTATTGTCAATTGTCA
GTAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6648#0      CCGTGTTCCTCGCTCTCTTCCCTTTCCTTTTTTTCTCTCTCTAAAATCGCAACCCACAAA 60
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      ------------------------------------------------------------
                                                                                  

consensus_6648#0      TCCTTCTGATCCGTTTGTGTCAGAGCCAAATCTTCTTCTTCTTCTCCATCTCTCTCCTCT 120
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      ------------------------------------------------------------
                                                                                  

consensus_6648#0      CCTCTTCTCTTCTCTCGTTGGAAGGTGAGGAGGTGAGGTGAGGTTGGGGGCGCCGTTTGA 180
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      ------------------------------------------------------------
                                                                                  

consensus_6648#0      TGGACGCGAAGAGGACGCCGCCGCCGCCGACGCCGCCGAACCCTAACCCTAGCGTAATTG 240
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      ------------------------------------------------------------
                                                                                  

consensus_6648#0      GCAGCGGCGCCGCCGCGGACGGCGGCGGATTTGGGAGGGGGGAAGCGGCGGCGGCGACGA 300
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      ------------------------------------------------------------
                                                                                  

consensus_6648#0      AGCACATGCTGGCCTTCCACTTCCTGCGCGCGCTGTCGCGGATCCACCGGGCGACACCCG 360
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      ------------------------------------------------------------
                                                                                  

consensus_6648#0      TGACGCGGCGCACGCGGACCATCCGCCGGGCGGCCTACTCCTCCATGGCGCGGGCGGCGA 420
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      ------------------------------------------------------------
                                                                                  

consensus_6648#0      GCCCGCGCCGCGCGTGGAGCCGGGCGCTGCTCGGCCAGGTCCGCGCGCGGAGGTCCAGGA 480
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      ------------------------------------------------------------
                                                                                  

consensus_6648#0      CGCTGATGAGGCGCGCCGCCGTGCTGGTGCGGAGGCGCGTCGTAGCCGCTCCTGCGCCTT 540
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      ------------------------------------------------------------
                                                                                  

consensus_6648#0      CTCCCGCCTCCGCCAGAGGCGTCAGGATTATTGCTGCCGGAGAGACGTCGGCGGCGGCTC 600
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      ------------------------------------------------------------
                                                                                  

consensus_6648#0      GGGCTGTTCCGCCGCCTCCGCGGCAGCAGGGCGAGCCGCCGAGGGCCGAAGCGCTCCGGC 660
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      ------------------------------------------------------------
                                                                                  

consensus_6648#0      GCCTGGTCCCCGGCGGCGCCGGCATGGAGTACTCCAGCCTCCTGGAGGAGACCGCCGACT 720
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      ------------------------------------------------------------
                                                                                  

consensus_6648#0      ACCTCCGCTCGCTTCGCGCGCAGGTGCAGCTGATGCAAGGCCTCGTCGACCTCTTCTCCT 780
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      ---------------------------------------AATTAACATATCCATCATATG 21
                                                                                  

consensus_6648#0      ACCAATGATCCATCCATCGAGTAATTAACATATGCATCATATGGTTAATTATTTATTCGT 840
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      TTAATTATTTCTTCGTTCNTCTTGCACGCATCACATGCTGCTGTTGCTGCTTCTGTTCTA 81
                                                                                  

consensus_6648#0      TCGTCTTGCACGCATCACATGCTGCTGTTGCTGCTTCTGTTCTACTTCTCTACCTACAT- 899
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      CTTCTCTACCTACATCATATCGATCTATCTCTTGTTCATGTGGATCGATCGATCGATGCA 141
                                                                                  

consensus_6648#0      CATATCGATCTATCTCTTGTTCATGTGGATCGATCGATCGATGCATATGATGGTTGGTTA 959
consensus_6648#2      ------------------------------------------------------------
consensus_6648#1      TATGACGATCTATCTCTTGTTCATGTGGATCGATCGATCGATGCATATGATGGTTGGTTA 201
                                                                                  

consensus_6648#0      AGATAGGGGATTATTATTGGGGTAATTAAGGGGAGGATCTAGGAGATTGGGTGGAGTGTT 1019
consensus_6648#2      ---------------AGAGGACGAGACAAGGGGAGGATCTAGGAGATTGGGTGGAGTGTT 45
consensus_6648#1      AGATAGGGGATTATTATTGGGGTAATTAAGGGGAGGATCTAGGAGATTGGGTGGAGTGTT 261
                                     *  **   *   *********************************

consensus_6648#0      AGTATACATGTTTTTTGTTTTTGTTGGTAATTAAGATTATTGGTAGGTGATGAAAAGATT 1079
consensus_6648#2      AGTATACATGTTTTT-GTTTTTGTTGGTAATTAAGATTATTGGTAGGTGATGAAAAGATT 104
consensus_6648#1      AGTATACATGTTTTT-GTTTTTGTTGGTAATTAAGATTATTGGTAGGTGATGAAAAGATT 320
                      *************** ********************************************

consensus_6648#0      GTTGGATACATACATCCATGTATAGAAGTATAGGCCGACCGGCTGGGAGCACAATGAATT 1139
consensus_6648#2      GTTGGATACATACATCCATGTATAGAAGTATAGGCCGACCGGCTGGGAGCCCAATGAATT 164
consensus_6648#1      GTTGGATACATACATCCATGTATAGAAGTATAGGCCGACCGGCTGGGAGCACA-TGAATT 379
                      ************************************************** ** ******

consensus_6648#0      GAATCATATATACCAAGAAGAAGGCTTTATAGAGAGAGAGAGAGAGAGGGGTAATTAATT 1199
consensus_6648#2      GAATCATATATACCAAGAAGAAGGCTTTATAGAGAGAGAGAGA----GGGGTAATTAATT 220
consensus_6648#1      GAATCATATATACCCAGAAGAAGGCTTTATAGAGAGAGAGAGA----GGGGTAATTAATT 435
                      ************** ****************************    *************

consensus_6648#0      GTAACATATAAAGAGAAGGATGAAGTTACATATACTATATGATAGTGAATT-AGTGCAGT 1258
consensus_6648#2      GTAACATATAAAGAGAAGGATGAAGTTGCATATACTATATGATAGTGAATT-AGTGCAGT 279
consensus_6648#1      GTAACATATAAAGAGAAGGATGAAGTTGCATATACTATATGATAGTGAATTTAGTCCAAA 495
                      *************************** *********************** *** **  

consensus_6648#0      GTTAATTGTTGTCAATTGTCAGTAAATCGATCTAT-- 1293
consensus_6648#2      GTTAATTATTGTCAATTGTCAGTAAAAAAAAAAAAAA 316
consensus_6648#1      A------------------------------------ 496