These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [AAGCATCTCAGATAAAACTTTCTCCCATAAATATCAACTCATATCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGGCAAGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCTGGACTGAATCAACAAAGGCTTCCTCTATCTAAACTGATAATTTTATGATACTACCAGTCTCGTGTCCAAGTTTGCCATAATATGTCCACGCAAAATAATGCATCCCACTGGAAATACATAATTACACTAAAATTAGAGTGTAAATATATCGTTAGCAGGTGAGCTTACCTGGAAAAATGAACACTAACGTGTCACTTTGTATTACATCATGCAAACAATTTACATTGTTCTAAGAAACGAGAACTAACCGAGTTTCGAGTGACAAAAACTGCAGGGATGAATGCTATCTCAGGGCCATCAAACTGCACACACACTTCGTCAAATAAAATATCGGGTTGTCATTTAAAGTTCAGAGATGAATTCACCACTGAAAAATATAAAGATCTAAATGTTAGTTCTAGTTCAACTTTAGACATGATCAACCAAGGATGACAAAATGCACATAATTAAACTTATCCTTCCGTGCTCATGTATCTGGAGGCCATGAACACATCTATTAATCCAGAAATCCTTTATCTGATATATGATGCCTCGTTTTGAGCACATGATTCAACTTAAAAAATAAAATAAAATTGAACCTGTTAATCATTTGATGAAGCAACCCATGAGCATGAGAGAGTGAT] [+] EMBL CB619409 [AAGCATCTCAGATAAAACTTTCTCCCATAAATATCAACTCATATCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGGCAAGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCTGGACTGAATCAACAAAGGCTTCCTCTATCTAAACTGATAATTTTATGATACTACCAGTCTCGTGTCCAAGTTTGCCATAATATGTCCACGCAAAATAATGCATCCCACTGGAAATACATAATTACACTAAAATTAGAGTGTAAATATATCGTTAGCAGGTGAGCTTACCTGGAAAAATGAACACTAACGTGTCACTTTGTATTACATCATGCAAACAATTTACATTGTTCTAAGAAACGAGAACTAACCGAGTTTCGAGTGACAAAAACTGCAGGGATGAATGCTATCTCAGGGCCATCAAACTGCACACACACTTCGTCAAATAAAATATCGGGTTGTCATTTAAAGTTCAGAGATGAATTCACCACTGAAAAATATAAAGATCTAAATGTTAGTTCTAGTTCAACTTTAGACATGATCAACCAAGGATGACAAAATGCACATAATTAAACTTATCCTTCCGTGCTCATGTATCTGGAGGCCATGAACACATCTATTAATCCAGAAATCCTTTATCTGATATATGATGCCTCGTTTTGAGCACATGATTCAACTTAAAAAATAAAATAAAATTGAACCTGTTAATCATTTGATGAAGCAACCCATGAGCATGAGAGAGTGAT] consensusID : consensus_6652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 739 fasta sequence [GCGCTCCCACCCGCGCCTCACCGCCGACAGCGCTCGCCCTCCACCCCGCCCGCCGCCGCCGACTCCTCGTGCCCTCCTACCACCTGTCGGCGTGACCAGGCAGCCGCCGACGCCTGCGCACACCCTCCCGCCAGCCCTCAATCCGCCCTTTTTGGTTTGGTCACATGATTCAGTTGCCAAAACACCCGTCACCGCAAGTCCACACGCCCTCCACCAATCTTGACCAATGACGCTGGCGCCATCGAACGACACGGCAGGTCAAAGGATCAGCATTGATAATTCCTGTCGTTGCAATCATCTTCCATGCGGGATCCAGATTCATGGCGTCATAAGAGAGAACAACTGGAACCTTACTTATTTTTTTTCTGCATTCTTTGCAATATACCATGAAGTTCTACTTTACTATTGTTTGGACCTGCTACTAATACTTCGTCTATTTTCTTAAACAGGTTCTATGTCTGTTACTCCCACTCATGGAAGGGCTCCCGTAGGAGACATCATAAAAGTAGGGGTTGCCAAACAAAACATAACCCATCACATTAAGAATTTAGCTTCCTTTGGTGCTACCCAAACCTGTTCAGGAATCATGAAAATGATAGAAAATCCTGGAGCTAATTTCTGGTGTTGTTCCACTATACAACCCTACGGAAATCGGAGGCAGCTTCTTAATACAATGAACAACGTTGGCAACTCTACACCAGATTCATCAACAGAGTCAGGTCTATTCTTTCCAAAGTTT] [+] EMBL CB619408 [GCGCTCCCACCCGCGCCTCACCGCCGACAGCGCTCGCCCTCCACCCCGCCCGCCGCCGCCGACTCCTCGTGCCCTCCTACCACCTGTCGGCGTGACCAGGCAGCCGCCGACGCCTGCGCACACCCTCCCGCCAGCCCTCAATCCGCCCTTTTTGGTTTGGTCACATGATTCAGTTGCCAAAACACCCGTCACCGCAAGTCCACACGCCCTCCACCAATCTTGACCAATGACGCTGGCGCCATCGAACGACACGGCAGGTCAAAGGATCAGCATTGATAATTCCTGTCGTTGCAATCATCTTCCATGCGGGATCCAGATTCATGGCGTCATAAGAGAGAACAACTGGAACCTTACTTATTTTTTTTCTGCATTCTTTGCAATATACCATGAAGTTCTACTTTACTATTGTTTGGACCTGCTACTAATACTTCGTCTATTTTCTTAAACAGGTTCTATGTCTGTTACTCCCACTCATGGAAGGGCTCCCGTAGGAGACATCATAAAAGTAGGGGTTGCCAAACAAAACATAACCCATCACATTAAGAATTTAGCTTCCTTTGGTGCTACCCAAACCTGTTCAGGAATCATGAAAATGATAGAAAATCCTGGAGCTAATTTCTGGTGTTGTTCCACTATACAACCCTACGGAAATCGGAGGCAGCTTCTTAATACAATGAACAACGTTGGCAACTCTACACCAGATTCATCAACAGAGTCAGGTCTATTCTTTCCAAAGTTT] consensusID : consensus_6652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TTTTTTTTGAATTGGCAAGCATCTCAAATAAAACTTTCTCCCATAAATATCAACTCATATCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGCCAAGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCTGGACTGAATCAGCAAAGGCTTCCTCTATCTAAACTGATAATTTTATGATACTACCAGTCTCGTGTCCAAGTTTGCCATAATATGTCCACGCAAAATAACGCATCCCACGAGTTTCGAGTGACAGAAACTGCAGGGATAAATGCCATCTCAGGGCCATCAAACCGCACACGCACTTCGTCGAATAAAATATCGGGTTGTCATTTAAAGTTCAGAGATGAATTCACCACTGACTCTGTTGATGAATCTGGTGTAGAGTTGCCAACGTTGTTCATTGTATTAAGAAGCTGCCTCCGATTTCCGTAGGGTTGTAAAATGGAACAATACCAGAAATTAGCTCCAGGATTTTCTATCCTTTTCATGATTCCTGAACAGGTTTGGGTAGCACCAAAGGAAGCTAAATTCTTAATGTGATGGGTTATGTTTTGTTTGGCAACCCCTACTTTTATGATGTCTCCTACGGGAGCCCTTCCATGAGTGGGAGTAACAGACATAGACCCTTTGTCTCGTCCTCTGGCTCACCTAAATCA] [+] EMBL CA760852 [TTTTTTTTGAATTGGCAAGCATCTCAAATAAAACTTTCTCCCATAAATATCAACTCATATCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGCCAAGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCTGGACTGAATCAGCAAAGGCTTCCTCTATCTAAACTGATAATTTTATGATACTACCAGTCTCGTGTCCAAGTTTGCCATAATATGTCCACGCAAAATAACGCATCCCACGAGTTTCGAGTGACAGAAACTGCAGGGATAAATGCCATCTCAGGGCCATCAAACCGCACACGCACTTCGTCGAATAAAATATCGGGTTGTCATTTAAAGTTCAGAGATGAATTCACCACTGACTCTGTTGATGAATCTGGTGTAGAGTTGCCAACGTTGTTCATTGTATTAAGAAGCTGCCTCCGATTTCCGTAGGGTTGTAAAATGGAACAATACCAGAAATTAGCTCCAGGATTTTCTATCCTTTTCATGATTCCTGAACAGGTTTGGGTAGCACCAAAGGAAGCTAAATTCTTAATGTGATGGGTTATGTTTTGTTTGGCAACCCCTACTTTTATGATGTCTCCTACGGGAGCCCTTCCATGAGTGGGAGTAACAGACATAGACCCTTTGTCTCGTCCTCTGGCTCACCTAAATCA] consensusID : consensus_6652#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence [TTTTGAATNGGGNAGCATCTCAGGATAAAACTTTCTCCCATAAATATCAACTCATATCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGCCAAGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCGTGGACGTGGGGAAAAAATTCCGAGCAA] [-] EMBL BM421272 [TTTTGAATNGGGNAGCATCTCAGGATAAAACTTTCTCCCATAAATATCAACTCATATCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGCCAAGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCGTGGACGTGGGGAAAAAATTCCGAGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6652#2 TTTTTTTTGAATTGGCAAGCATCTCAA-ATAAAACTTTCTCCCATAAATATCAACTCATA 59 consensus_6652#3 ----TTTTGAATNGGGNAGCATCTCAGGATAAAACTTTCTCCCATAAATATCAACTCATA 56 consensus_6652#0 ----------------AAGCATCTCAG-ATAAAACTTTCTCCCATAAATATCAACTCATA 43 consensus_6652#1 ------GCGCTCCCACCCGCGCCTCACCGCCGACAGCGCTCGC-----CCTCCACCCCGC 49 ** **** * *** * ** ** * consensus_6652#2 TCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGCCA 119 consensus_6652#3 TCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGCCA 116 consensus_6652#0 TCACCATAGACAACATAACAGGGAGTGAAATAGATATGAAGGGAAGATGGTCTTCAGGCA 103 consensus_6652#1 CCGCCGCCGCCGACTCCTCGTGCCCTCCTACC-ACCTGTCGGCGTGACCAGG--CAGCC- 105 * ** * * ** * * * * * ** ** ** *** * consensus_6652#2 AGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCC-TGGACTGAATCAG 178 consensus_6652#3 AGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCCGTGGAC---GTGGG 173 consensus_6652#0 AGCCATCATGCATAAACATCTTCCAGAAAAGACAAAGTCTATCTCC-TGGACTGAATCAA 162 consensus_6652#1 -GCCGACGCCTGCGCACACCCTCCCGCCAGCCCTCAATCCGCCCTTTTTGGTT---TGGT 161 *** * *** * *** * * * * ** * * * * consensus_6652#2 CAAAGGCTTCCTCTATCTAAACTGATAATTTTATGATACTACCAGTCTCGTGTCCAAGTT 238 consensus_6652#3 GAAAAAATTCCG--AGCAA----------------------------------------- 190 consensus_6652#0 CAAAGGCTTCCTCTATCTAAACTGATAATTTTATGATACTACCAGTCTCGTGTCCAAGTT 222 consensus_6652#1 CACATGATTCAGTTGCCAAAACACCCGTCACCGCAAGTCCACACGCCCTCCACCAATCTT 221 * * *** * * consensus_6652#2 TGCCATAATATGTCCACGCAAAATAACGCATCCCAC---GAGTTTCGAGTGACA--GAAA 293 consensus_6652#3 ------------------------------------------------------------ consensus_6652#0 TGCCATAATATGTCCACGCAAAATAATGCATCCCACTGGAAATACATAATTACACTAAAA 282 consensus_6652#1 GACCAATGACGCTGGCGCCATCGAACGACACGGCAGGTCAAAGGATCAGCATTGATAATT 281 consensus_6652#2 CTGCAGGGATAA-ATGCCATCTCAGGGCCATCAAACC-----------GCACACGCACTT 341 consensus_6652#3 ------------------------------------------------------------ consensus_6652#0 TTAGAGTGTAAATATATCGTTAGCAGGTGAGCTTACCTGGAAAAATGAACACTAACGTGT 342 consensus_6652#1 CCTGTCGTTGCAATCATCTTCCATGCGGGATCCAGATTC--ATGGCGTCATAAGAGAGAA 339 consensus_6652#2 CGTCGAATAAAATATCGGGTTGTCATTTAAAGTTCAGAGATGAATTCACCACTGACTCTG 401 consensus_6652#3 ------------------------------------------------------------ consensus_6652#0 CACTTTGTATTACATCATGCAAACAATTTACATTGTTCTAAGAAACGAGAACTAACCGAG 402 consensus_6652#1 CAACTGGAACCTTACTTATTTTTTTTCTGCATTCTTTGCAATATACCATGAAGTTCTACT 399 consensus_6652#2 TT--GATGAATCTGGTGTAGAGTTGCCAACGTTGTTCATTGTATTAAGAAGCTGCCTCCG 459 consensus_6652#3 ------------------------------------------------------------ consensus_6652#0 TTTCGAGTGACAAAAACTGCAGGGATGAATGCTAT-CTCAGGGCCATCAAACTGCACACA 461 consensus_6652#1 TTACTATTGTTTGGACCTGCTACTAATACTTCGTCTATTTTCTTAAACAGGTTCTATGTC 459 consensus_6652#2 ATTTCCGTAGGGTTGTAAAATGGAACAATACCAGAAATTAGCTCCAGGATTTTCTATCCT 519 consensus_6652#3 ------------------------------------------------------------ consensus_6652#0 CACTTCGTCAAATAAAATATCGGGTTGTCATTTAAAGTTCAGAGATGAATTCACCACTGA 521 consensus_6652#1 TGTTACTCCCACTCATGGAAGGGCTCCCGTAGGAGACATCATAAAAGTAGGGGTTGCCAA 519 consensus_6652#2 ----TTTCATGATTCCTGAACAGGTTTGGGTAGCACCAAAGGAAGCTAAATTCTTAATGT 575 consensus_6652#3 ------------------------------------------------------------ consensus_6652#0 AAAATATAAAGATCTAAATGTTAGTTCTAGTT-CAACTTTAGACATGATCAACCAAGGAT 580 consensus_6652#1 ACAAAACATAACCCATCACATTAAGAATTTAGCTTCCTTTGGTGCTACCCAAACCTGTTC 579 consensus_6652#2 GATGGGTTATGTTTTGTTTGGCAACCCCTACTTTTATGATGTCTCCTACGG----GAGCC 631 consensus_6652#3 ------------------------------------------------------------ consensus_6652#0 GACAAAATGCACATAATTAAACTTATCCTTCCGTGCTCATGTATCTGGAGGCCATGAACA 640 consensus_6652#1 AGGAATCATGAAAATGATAGAAAATCCTGGAGCTAATTTCTGGTGTTGTTCCACTATACA 639 consensus_6652#2 CTTCCATGAGTGGGAGTAACAGACATAGACCCTTTGTCTCGTCCTCTGGCTCACCTAAAT 691 consensus_6652#3 ------------------------------------------------------------ consensus_6652#0 CATCTATTAATCCAGAAATCCTTTATCTGATATATGATGCCTCGTTTTGAGCACATGATT 700 consensus_6652#1 ACCCTACGGAAATCGGAGGCAGCTTCTTAATACAATGAACAACGTTGGCAACTCTACACC 699 consensus_6652#2 CA---------------------------------------------------------- 693 consensus_6652#3 ------------------------------------------------------------ consensus_6652#0 CAACTTAAAAAATAAAATAAAATTGAACCTGTTAATCATTTGATGAAGCAACCCATGAGC 760 consensus_6652#1 AGATTCATCAACAGAGTCAGGTCTATTCTTTCCAAAGTTT-------------------- 739 consensus_6652#2 ------------- consensus_6652#3 ------------- consensus_6652#0 ATGAGAGAGTGAT 773 consensus_6652#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||