Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6653 cluster # 6653       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6653#0 length = 579 sequences # 4  

consensusID : consensus_6653#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 579
fasta sequence
                              [AACACAACTCTTGCATCACCATCTGAGAGAAACCAGGGAGATACACACAAGCAATAGCCATGGCGAGACAACAACTCCTAGGTTTGTTCTTGGTCCTC-GCCATTATGGTGGCGGTCGTGTGGGGCGACCCTAGCGGCGGCTGCGACCAAGACCGGCAGGACATGATCCGGGAGTGCAAGAAGTACGAGGGGTGGCCGGCGGAGCCCAAAATCGAGCCGTCAGAGGCGTGCTGCGCCGTGTGGCAAAGGGCCAACATCCCCTGCCTGTGCGCCGGCGTCACCAAGGAGAAGGAGAAGGTGTGGTGCATGGAGAAGGTCGTCTATGTCGCCAAGTTCTGCAAGAAGCCGTTCCAGCCTGGCTACCAGTGCGGAAGCTACACTGTTCCATCGAGCCTA-GGGCAATAAATAGTACGTTGTTACTGATTTTTATTTTTCCTTGTGACAGAAGAAGTACTTCTGGGATTAGTTTTCATGTCTCGTGACATGCACAATGTATAACTTCTGTGATTTGTGTGGACTGCAAAAGTGGGAAAAACTGAGAATTAATAAAAACAGAAACTTCTTCTAATTAAAAAAAAAA]

[+] EMBL AK111061             [AACACAACTCTTGCATCACCATCTGAGAGAAACCAGGGAGATACACACAAGCAATAGCCATGGCGAGACAACAACTCCTAGGTTTGTTCTTGGTCCTC GCCATTATGGTGGCGGTCGTGTGGGGCGACCCTAGCGGCGGCTGCGACCAAGACCGGCAGGACATGATCCGGGAGTGCAAGAAGTACGAGGGGTGGCCGGCGGAGCCCAAAATCGAGCCGTCAGAGGCGTGCTGCGCCGTGTGGCAAAGGGCCAACATCCCCTGCCTGTGCGCCGGCGTCACCAAGGAGAAGGAGAAGGTGTGGTGCATGGAGAAGGTCGTCTATGTCGCCAAGTTCTGCAAGAAGCCGTTCCAGCCTGGCTACCAGTGCGGAAGCTACACTGTTCCATCGAGCCTA GGGCAATAAATAGTACGTTGTTACTGATTTTTATTTTTCCTTGTGACAGAAGAAGTACTTCTGGGATTAGTTTTCATGTCTCGTGACATGCACAATGTATAACTTCTGTGATTTGTGTGGACTGCAAAATTGGGAAAAACTGAGAATTAATAAAAACAGA                        ]
[+] EMBL BI797503             [                                                                                       TCTT GTCCTCAGCCATTATGGT GCGTTCGTGT GGGCGACCCTAGC GCGGCTGCGACCAAGACCGGCAGGACATGATCCGGGAGTGCAAGAAGTACGAGGGGTGGCCGGCGGAGCCCAAAATCGAGCCGTCAGAGGCGTGCTGCGCCGTGTGGCAAAGGGCCAACATCCCCTGCCTGTGCGCCGGCGTCACCAAGGAGAAGGAGAAGGTGTGGTGCATGGAGAAGGTCGTCTATGTCGCCAAGTTCTGCAAGAAGCCGTTCCAGCCTGGCTACCAGTGCGGAAGCTACACTGTTCCATCGAGCCTA GGGCAATAAATAGTACGTTGTTACTGATTTTTATTTTTCCTTGTGACAGAAGAAGTACTTCTGGGATTAGTTTTCATGTCTCGTGACATGCAC ATGTATAACTTCTGTGATTTGTGTGGACTGC AAAGTGGGAAAAACTGAGAATTAATAAAAACAGAAACTTCTTCTAATTAAAAAAAAAA]
[+] EMBL AA750938             [                                                                                                                                                                                                                                                                                                                                                                    TGGCTACCAGTGCGGAACGTACACTGTTCCATCGAGCCTA GGG AATAAATAGTACGTTGTTACTGATTTTTATTTTTCCTTGTGACAGAAGAAGTACTTCTGGGATTAGTTTTCATGTCTCGTGACAT CACAATGTATAACTTCTGTGATTTGTGTG                                                                 ]
[-] EMBL CA760577             [                                                                                                                                                                                                                                                                                                                                                                                              agaggaCGAGACAAGGGGCAATAAATAGTACGTTGTTACTGATTTTTATTTTTCCTTGTGACAGAAGAAGTACTTCTGGGATTAGTTTTCATGTCTCGTGACATGCACAATGTATAACTTCTGTGATTTGTGTGGACTGCAAAAGTGGG                                                  ]


>consensus_6653#0 AACACAACTCTTGCATCACCATCTGAGAGAAACCAGGGAGATACACACAAGCAATAGCCA TGGCGAGACAACAACTCCTAGGTTTGTTCTTGGTCCTCGCCATTATGGTGGCGGTCGTGT GGGGCGACCCTAGCGGCGGCTGCGACCAAGACCGGCAGGACATGATCCGGGAGTGCAAGA AGTACGAGGGGTGGCCGGCGGAGCCCAAAATCGAGCCGTCAGAGGCGTGCTGCGCCGTGT GGCAAAGGGCCAACATCCCCTGCCTGTGCGCCGGCGTCACCAAGGAGAAGGAGAAGGTGT GGTGCATGGAGAAGGTCGTCTATGTCGCCAAGTTCTGCAAGAAGCCGTTCCAGCCTGGCT ACCAGTGCGGAAGCTACACTGTTCCATCGAGCCTAGGGCAATAAATAGTACGTTGTTACT GATTTTTATTTTTCCTTGTGACAGAAGAAGTACTTCTGGGATTAGTTTTCATGTCTCGTG ACATGCACAATGTATAACTTCTGTGATTTGTGTGGACTGCAAAAGTGGGAAAAACTGAGA ATTAATAAAAACAGAAACTTCTTCTAATTAAAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)