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Oryza sativa
cluster # 6656 cluster # 6656       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6656#0 length = 1185 sequences # 3  
consensus_6656#1 length = 568 sequences # 1  

consensusID : consensus_6656#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1185
fasta sequence
                              [GGGAAGAGACAGAAACCCCGAAACCCCCCAAAGGTTCCCACTTCCTCCCACCCGCCCAAACCCATCCTCCGCCGCCAACGCGCCGAGAGCAAAAAAAGAGAAGCACCGGGATGCTGTACATCGTGGGGCTCGGCCTCGGCGACGAGCGCGACATCACCGTGCGGGGGCTCGACGCCGTCCGCCGCTGCGCCAAGGTCTACATGGAGGCCTACACCTCCCTCCTTTCCCTCGGCCTCGACCCCTCCGCGCTCTCCAACCTCGAGAAGATGTATGGGAAGGAGATCACGGTGGCGGACCGCGAGATGGTGGAGGAGCGCGCCGACCAGATGCTCCGCGAGGCCGCCGACGCGGACGTCGCCTTCCTCGTCGTCGGCGACCCCTTCGGCGCAACTACACACACTGATCTGGTGGTTCGCGCCAAGAACATGGGGGTGGAAGTGAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGCGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCACATGATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTTGTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCGCCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGTTA-AACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTATTGAACCTTGTTTACATTGTGTGAGCTCATATTTGAATGTGTTCG]

[+] EMBL AK103902             [GGGAAGAGACAGAAACCCCGAAACCCCCCAAAGGTTCCCACTTCCTCCCACCCGCCCAAACCCATCCTCCGCCGCCAACGCGCCGAGAGCAAAAAAAGAGAAGCACCGGGATGCTGTACATCGTGGGGCTCGGCCTCGGCGACGAGCGCGACATCACCGTGCGGGGGCTCGACGCCGTCCGCCGCTGCGCCAAGGTCTACATGGAGGCCTACACCTCCCTCCTTTCCCTCGGCCTCGACCCCTCCGCGCTCTCCAACCTCGAGAAGATGTATGGGAAGGAGATCACGGTGGCGGACCGCGAGATGGTGGAGGAGCGCGCCGACCAGATGCTCCGCGAGGCCGCCGACGCGGACGTCGCCTTCCTCGTCGTCGGCGACCCCTTCGGCGCAACTACACACACTGATCTGGTGGTTCGCGCCAAGAACATGGGGGTGGAAGTGAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGCGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCACATGATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTTGTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCGCCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGTTA AACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTATTGAACCTTGTTTACATTGTGTGAGCTCATATTTGAAT       ]
[+] EMBL AK069271             [                                                         AAACCCATCCTCCGCCGCCAACGCGCCGAGAGCAAAAAAAGAGAAGCACCGGGATGCTGTACATCGTGGGGCTCGGCCTCGGCGACGAGCGCGACATCACCGTGCGGGGGCTCGACGCCGTCCGCCGCTGCGCCAAGGTCTACATGGAGGCCTACACCTCCCTCCTTTCCCTCGGCCTCGACCCCTCCGCGCTCTCCAACCTCGAGAAGATGTATGGGAAGGAGATCACGGTGGCGGACCGCGAGATGGTGGAGGAGCGCGCCGACCAGATGCTCCGCGAGGCCGCCGACGCGGACGTCGCCTTCCTCGTCGTCGGCGACCCCTTCGGCGCAACTACACACACTGATCTGGTGGTTCGCGCCAAGAACATGGGGGTGGAAGTGAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTCTGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGCGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCACATGATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTTGTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCGCCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGTTA AACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTATTGAACCTTGTTTACATTGTGTGAGCTCATATTTGAATGTGTTCG]
[+] EMBL AA751077             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGTGATGATGAATGAAAGTGCTTTTATGGCCTTGTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCGCCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCA TTTTAAGTTAGTACTGGGTACAGCTGTTG TC  TTTTTGGCCTGATACCGAATACTCTCAAca                                                  ]


>consensus_6656#0 GGGAAGAGACAGAAACCCCGAAACCCCCCAAAGGTTCCCACTTCCTCCCACCCGCCCAAA CCCATCCTCCGCCGCCAACGCGCCGAGAGCAAAAAAAGAGAAGCACCGGGATGCTGTACA TCGTGGGGCTCGGCCTCGGCGACGAGCGCGACATCACCGTGCGGGGGCTCGACGCCGTCC GCCGCTGCGCCAAGGTCTACATGGAGGCCTACACCTCCCTCCTTTCCCTCGGCCTCGACC CCTCCGCGCTCTCCAACCTCGAGAAGATGTATGGGAAGGAGATCACGGTGGCGGACCGCG AGATGGTGGAGGAGCGCGCCGACCAGATGCTCCGCGAGGCCGCCGACGCGGACGTCGCCT TCCTCGTCGTCGGCGACCCCTTCGGCGCAACTACACACACTGATCTGGTGGTTCGCGCCA AGAACATGGGGGTGGAAGTGAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAG TTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGA CATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACA CACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAA AGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGG AGGTGGAGGAACTGCGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTG CTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATG TCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAG AAGAGATGATAGAATTCCACATGATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTT GTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCG CCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGT TAAACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTA TTGAACCTTGTTTACATTGTGTGAGCTCATATTTGAATGTGTTCG



consensusID : consensus_6656#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence
                              [GAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGTGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACCACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCTCATGATCAAGTCATGATGAATGAAAGTGCTTTTATGTGAGTTTCACTCCTTTCTTGCAATGAAAAAAAAAAAAGCAATACTTGTATGC]

[+] EMBL CA767190             [GAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGTGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACCACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCTCATGATCAAGTCATGATGAATGAAAGTGCTTTTATGTGAGTTTCACTCCTTTCTTGCAATGAAAAAAAAAAAAGCAATACTTGTATGC]


>consensus_6656#1 GAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTA CCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTT CTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATAT TCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTATGAACCACC AAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGTGTGG GGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGA TCAGAAGATCGTCGCTGGACCTATGAAGAAACCACTAGATGTCGATTTCGGCCCACCCCT TCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCT CATGATCAAGTCATGATGAATGAAAGTGCTTTTATGTGAGTTTCACTCCTTTCTTGCAAT GAAAAAAAAAAAAGCAATACTTGTATGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6656#0      GGGAAGAGACAGAAACCCCGAAACCCCCCAAAGGTTCCCACTTCCTCCCACCCGCCCAAA 60
consensus_6656#1      ------------------------------------------------------------
                                                                                  

consensus_6656#0      CCCATCCTCCGCCGCCAACGCGCCGAGAGCAAAAAAAGAGAAGCACCGGGATGCTGTACA 120
consensus_6656#1      ------------------------------------------------------------
                                                                                  

consensus_6656#0      TCGTGGGGCTCGGCCTCGGCGACGAGCGCGACATCACCGTGCGGGGGCTCGACGCCGTCC 180
consensus_6656#1      ------------------------------------------------------------
                                                                                  

consensus_6656#0      GCCGCTGCGCCAAGGTCTACATGGAGGCCTACACCTCCCTCCTTTCCCTCGGCCTCGACC 240
consensus_6656#1      ------------------------------------------------------------
                                                                                  

consensus_6656#0      CCTCCGCGCTCTCCAACCTCGAGAAGATGTATGGGAAGGAGATCACGGTGGCGGACCGCG 300
consensus_6656#1      ------------------------------------------------------------
                                                                                  

consensus_6656#0      AGATGGTGGAGGAGCGCGCCGACCAGATGCTCCGCGAGGCCGCCGACGCGGACGTCGCCT 360
consensus_6656#1      ------------------------------------------------------------
                                                                                  

consensus_6656#0      TCCTCGTCGTCGGCGACCCCTTCGGCGCAACTACACACACTGATCTGGTGGTTCGCGCCA 420
consensus_6656#1      ------------------------------------------------------------
                                                                                  

consensus_6656#0      AGAACATGGGGGTGGAAGTGAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAG 480
consensus_6656#1      -------------------GAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAG 41
                                         *****************************************

consensus_6656#0      TTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGA 540
consensus_6656#1      TTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGA 101
                      ************************************************************

consensus_6656#0      CATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACA 600
consensus_6656#1      CATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACA 161
                      ************************************************************

consensus_6656#0      CACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAA 660
consensus_6656#1      CACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAA 221
                      ************************************************************

consensus_6656#0      AGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGG 720
consensus_6656#1      AGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGG 281
                      ************************************************************

consensus_6656#0      AGGTGGAGGAACTGCGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTG 780
consensus_6656#1      AGGTGGAGGAACTGTGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTG 341
                      ************** *********************************************

consensus_6656#0      CTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATG 840
consensus_6656#1      CTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACCACTAGATG 401
                      *************************************************** ********

consensus_6656#0      TCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAG 900
consensus_6656#1      TCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAG 461
                      ************************************************************

consensus_6656#0      AAGAGATGATAGAATTCCACATGATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTT 960
consensus_6656#1      AAGAGATGATAGAATTCCTCATGATCAAGTCATGATGAATGAAAGTGCTTTTATGTGAGT 521
                      ****************** ************************************    *

consensus_6656#0      GTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCG 1020
consensus_6656#1      TTCACTCCTTTCTTGCAATGAAAAAAAAAA--------AAGCAATACTTGTATGC----- 568
                       *  **   * * **     *     * *         ** * ******  ****     

consensus_6656#0      CCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGT 1080
consensus_6656#1      ------------------------------------------------------------
                                                                                  

consensus_6656#0      TAAACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTA 1140
consensus_6656#1      ------------------------------------------------------------
                                                                                  

consensus_6656#0      TTGAACCTTGTTTACATTGTGTGAGCTCATATTTGAATGTGTTCG 1185
consensus_6656#1      ---------------------------------------------
                                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)