These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1185 fasta sequence [GGGAAGAGACAGAAACCCCGAAACCCCCCAAAGGTTCCCACTTCCTCCCACCCGCCCAAACCCATCCTCCGCCGCCAACGCGCCGAGAGCAAAAAAAGAGAAGCACCGGGATGCTGTACATCGTGGGGCTCGGCCTCGGCGACGAGCGCGACATCACCGTGCGGGGGCTCGACGCCGTCCGCCGCTGCGCCAAGGTCTACATGGAGGCCTACACCTCCCTCCTTTCCCTCGGCCTCGACCCCTCCGCGCTCTCCAACCTCGAGAAGATGTATGGGAAGGAGATCACGGTGGCGGACCGCGAGATGGTGGAGGAGCGCGCCGACCAGATGCTCCGCGAGGCCGCCGACGCGGACGTCGCCTTCCTCGTCGTCGGCGACCCCTTCGGCGCAACTACACACACTGATCTGGTGGTTCGCGCCAAGAACATGGGGGTGGAAGTGAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGCGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCACATGATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTTGTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCGCCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGTTA-AACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTATTGAACCTTGTTTACATTGTGTGAGCTCATATTTGAATGTGTTCG] [+] EMBL AK103902 [GGGAAGAGACAGAAACCCCGAAACCCCCCAAAGGTTCCCACTTCCTCCCACCCGCCCAAACCCATCCTCCGCCGCCAACGCGCCGAGAGCAAAAAAAGAGAAGCACCGGGATGCTGTACATCGTGGGGCTCGGCCTCGGCGACGAGCGCGACATCACCGTGCGGGGGCTCGACGCCGTCCGCCGCTGCGCCAAGGTCTACATGGAGGCCTACACCTCCCTCCTTTCCCTCGGCCTCGACCCCTCCGCGCTCTCCAACCTCGAGAAGATGTATGGGAAGGAGATCACGGTGGCGGACCGCGAGATGGTGGAGGAGCGCGCCGACCAGATGCTCCGCGAGGCCGCCGACGCGGACGTCGCCTTCCTCGTCGTCGGCGACCCCTTCGGCGCAACTACACACACTGATCTGGTGGTTCGCGCCAAGAACATGGGGGTGGAAGTGAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGCGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCACATGATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTTGTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCGCCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGTTA AACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTATTGAACCTTGTTTACATTGTGTGAGCTCATATTTGAAT ] [+] EMBL AK069271 [ AAACCCATCCTCCGCCGCCAACGCGCCGAGAGCAAAAAAAGAGAAGCACCGGGATGCTGTACATCGTGGGGCTCGGCCTCGGCGACGAGCGCGACATCACCGTGCGGGGGCTCGACGCCGTCCGCCGCTGCGCCAAGGTCTACATGGAGGCCTACACCTCCCTCCTTTCCCTCGGCCTCGACCCCTCCGCGCTCTCCAACCTCGAGAAGATGTATGGGAAGGAGATCACGGTGGCGGACCGCGAGATGGTGGAGGAGCGCGCCGACCAGATGCTCCGCGAGGCCGCCGACGCGGACGTCGCCTTCCTCGTCGTCGGCGACCCCTTCGGCGCAACTACACACACTGATCTGGTGGTTCGCGCCAAGAACATGGGGGTGGAAGTGAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTCTGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGCGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCACATGATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTTGTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCGCCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGTTA AACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTATTGAACCTTGTTTACATTGTGTGAGCTCATATTTGAATGTGTTCG] [+] EMBL AA751077 [ AGTGATGATGAATGAAAGTGCTTTTATGGCCTTGTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCGCCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCA TTTTAAGTTAGTACTGGGTACAGCTGTTG TC TTTTTGGCCTGATACCGAATACTCTCAAca ] consensusID : consensus_6656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 568 fasta sequence [GAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGTGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACCACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCTCATGATCAAGTCATGATGAATGAAAGTGCTTTTATGTGAGTTTCACTCCTTTCTTGCAATGAAAAAAAAAAAAGCAATACTTGTATGC] [+] EMBL CA767190 [GAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAGTTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGACATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACACACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAAAGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGGAGGTGGAGGAACTGTGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTGCTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACCACTAGATGTCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAGAAGAGATGATAGAATTCCTCATGATCAAGTCATGATGAATGAAAGTGCTTTTATGTGAGTTTCACTCCTTTCTTGCAATGAAAAAAAAAAAAGCAATACTTGTATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6656#0 GGGAAGAGACAGAAACCCCGAAACCCCCCAAAGGTTCCCACTTCCTCCCACCCGCCCAAA 60 consensus_6656#1 ------------------------------------------------------------ consensus_6656#0 CCCATCCTCCGCCGCCAACGCGCCGAGAGCAAAAAAAGAGAAGCACCGGGATGCTGTACA 120 consensus_6656#1 ------------------------------------------------------------ consensus_6656#0 TCGTGGGGCTCGGCCTCGGCGACGAGCGCGACATCACCGTGCGGGGGCTCGACGCCGTCC 180 consensus_6656#1 ------------------------------------------------------------ consensus_6656#0 GCCGCTGCGCCAAGGTCTACATGGAGGCCTACACCTCCCTCCTTTCCCTCGGCCTCGACC 240 consensus_6656#1 ------------------------------------------------------------ consensus_6656#0 CCTCCGCGCTCTCCAACCTCGAGAAGATGTATGGGAAGGAGATCACGGTGGCGGACCGCG 300 consensus_6656#1 ------------------------------------------------------------ consensus_6656#0 AGATGGTGGAGGAGCGCGCCGACCAGATGCTCCGCGAGGCCGCCGACGCGGACGTCGCCT 360 consensus_6656#1 ------------------------------------------------------------ consensus_6656#0 TCCTCGTCGTCGGCGACCCCTTCGGCGCAACTACACACACTGATCTGGTGGTTCGCGCCA 420 consensus_6656#1 ------------------------------------------------------------ consensus_6656#0 AGAACATGGGGGTGGAAGTGAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAG 480 consensus_6656#1 -------------------GAAGGTGATCCACAATGCGTCCGTCATGAATGCAGTTGGAG 41 ***************************************** consensus_6656#0 TTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGA 540 consensus_6656#1 TTTGCGGATTGCAACTTTACCGCTACGGGGAGACCATCTCTATACCTTTCTTCACGGAGA 101 ************************************************************ consensus_6656#0 CATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACA 600 consensus_6656#1 CATGGAGGCCGGACAGTTTCTATGAGAAGATTCAGAACAATCGACGGCTTGGACTGCACA 161 ************************************************************ consensus_6656#0 CACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAA 660 consensus_6656#1 CACTTTGCTTACTAGATATTCGTGTTAAGGAACCAACGCTTGAGTCTTTATGCAGGGGAA 221 ************************************************************ consensus_6656#0 AGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGG 720 consensus_6656#1 AGAAAGTGTATGAACCACCAAGGTTCATGTCTGTAAACACCGCAATAAGTCAGCTTTTGG 281 ************************************************************ consensus_6656#0 AGGTGGAGGAACTGCGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTG 780 consensus_6656#1 AGGTGGAGGAACTGTGTGGGGGATCTGCATATGGCGCAGATTCACTATGCATAGGTGTTG 341 ************** ********************************************* consensus_6656#0 CTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACTACTAGATG 840 consensus_6656#1 CTCGCCTTGGAAGTGATGATCAGAAGATCGTCGCTGGACCTATGAAGAAACCACTAGATG 401 *************************************************** ******** consensus_6656#0 TCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAG 900 consensus_6656#1 TCGATTTCGGCCCACCCCTTCACTGCCTTATCATAGTGGGAGAGACGCATCCTGTGGAAG 461 ************************************************************ consensus_6656#0 AAGAGATGATAGAATTCCACATGATCAAGTCATGATGAATGAAAGTGCTTTTATGGCCTT 960 consensus_6656#1 AAGAGATGATAGAATTCCTCATGATCAAGTCATGATGAATGAAAGTGCTTTTATGTGAGT 521 ****************** ************************************ * consensus_6656#0 GTAGCTGGATACATGATCCCAGGCTTATAGCTCCCTTGAAACGATACTTCGATGCTTCCG 1020 consensus_6656#1 TTCACTCCTTTCTTGCAATGAAAAAAAAAA--------AAGCAATACTTGTATGC----- 568 * ** * * ** * * * ** * ****** **** consensus_6656#0 CCCGCCGTGAAAGGTCCACCAGTAGTAGTTTACTGCTCCAATTGTTGCTCATTTTTAAGT 1080 consensus_6656#1 ------------------------------------------------------------ consensus_6656#0 TAAACTGGGATCAGCTGTTGTTCTTTTTTTGGCCTGATACCGAATACTCTCAAACCAGTA 1140 consensus_6656#1 ------------------------------------------------------------ consensus_6656#0 TTGAACCTTGTTTACATTGTGTGAGCTCATATTTGAATGTGTTCG 1185 consensus_6656#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||