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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6659#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1281 fasta sequence
[AACAGTAATGTTCTACAGTTAGTGAGATGTAGAGAGAGATATGGCTAGCTAATCCATGAGAGAGGTCTAGATAGAGAGAGGGAGAGATGATCAGTTCTTCAGAAGAGGCTACTACTAGCTATCTAGCTTCATGTTTAACTCTTCTTGGTTTGTGTTTTTGTGTGCTTGTTGGAGTTGTTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTGACAGAAGAGAGTGAGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATACTGTTCTCTCATATCTATCTTCTTTGAGGTAGTAATATACTTGAGCAAATTAAGCTGCTTAATTATTTGTGTATGATGATCAGCTGCTGATCCGGCCTCATTTCTTGCATATATGACCACAACCACATACATGCTTGTTCATTTTTTTTCACAAAGAAAGAGAACAGTTTAATTTAATTTCTTGGGGTTTTTGGATCAGTTAATTCGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCC-ATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAG-CCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTCTGCCTAGCTAGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACGGCAAAACACAAACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTTAATTAATTATATGCAGGCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTGACGATTTTCATAGTCGTCAGAAGAAGGTGTGCATTGGTTTAATTTTTGTTCTTGGCTGTCAGACTAGATCATCTCTGAATGATCAAGAGCCGGATCAAATAATTATTGTGAGCACCGAAATCGATCATGCGTACTCTCTCTGTGAAGTATTTCTGAGAAATAATATGAGTGTAGCTAGTATATATACTCTTGAAGGGTGTCTAATTAATTGGGGTCTCTAGCTAGCTCCTTCTCTGAATCTGTCCATGAATTGAATCTACTATGTATGTGCTGGTGCTTACTGTTATTTCATGTACTACATATAATTGATAAATCAATTTAGGCTTTCAGTTTCTTTAAAAAAAAA]
[+] EMBL AK110797 [AACAGTAATGTTCTACAGTTAGTGAGATGTAGAGAGAGATATGGCTAGCTAATCCATGAGAGAGGTCTAGATAGAGAGAGGGAGAGATGATCAGTTCTTCAGAAGAGGCTACTACTAGCTATCTAGCTTCATGTTTAACTCTTCTTGGTTTGTGTTTTTGTGTGCTTGTTGGAGTTGTTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTGACAGAAGAGAGTGAGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATACTGTTCTCTCATATCTATCTTCTTTGAGGTAGTAATATACTTGAGCAAATTAAGCTGCTTAATTATTTGTGTATGATGATCAGCTGCTGATCCGGCCTCATTTCTTGCATATATGACCACAACCACATACATGCTTGTTCATTTTTTTTCACAAAGAAAGAGAACAGTTTAATTTAATTTCTTGGGGTTTTTGGATCAGTTAATTCGTCTTGAGAGGGGAAGAGATCTCTATGGGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCC ATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAG CCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTCTGCCTAGCTAGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACGGCAAAACACAAACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTTAATTAATTATATGCAGGCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTGACGATTTTCATAGTCGTCAGAAGAAGGTGTGCATTGGTTTAATTTTTGTTCTTGGCTGTCAGACTAGATCATCTCTGAATGATCAAGAGCCGGATCAAATAATTATTGTGAGCACCGAAATCGATCATGCGTACTCTCTCTGTGAAGTATTTCTGAGAAATAATATGAGTGTAGCTAGTATATATACTCTTGAAGGGTGTCTAATTAATTGGGGTCTCTAGCTAGCTCCTTCTCTGAATCTGTCCATGAATTGAATCTACTATGTATGTGCTGGTGCTTACTGTTATTTCATGTACTACATATAATTGATAAATCAATTTAGG ]
[+] EMBL AU091537 [ TGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAGCCNATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCCGTTCACCATGCCCAATATGATTAATCTCCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTCTNCCTAGCTAGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACGGCAAAACACAAACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTNAATTAATTATATGCAGGCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTGACGATTTTCATAGNCGTCAGAAGAAGGTGTGCATTGGTTNAATTTTTGTTCTTGGCTGTCAGACTAGATCATCTCTGAATGATCAAGAGCCGGATCAAATAATTATTGTGAGCACCGAAATCGATCATGCGTACTCTCTCTGTGAAGTATTTCTGAGAAATAATATGAGTGTAGCTAGTATATATACTCTTGAAGGGTGTCTAATTAATTGGGGTCTCTAGCTAGCTCCTTCTCTGAATCTGTCCATGAATTGAATCTACTATGTATGTGCTGGTGCTTACTGTTATTTCATGTACTACATATAATTGATAAATCAATTTAGGCTTTCAGTTTCTTTAAAAAAAAA]
consensusID : consensus_6659#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[CCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTCTGCCTAGCTAGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACGGCCAAACACAAACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTTAATTAATTATATGCAGGCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTGACGATTTTCATAGTCGTCAGAAAAAAGGGTGCATTGGTTTAATTTTTGTTCTTGGCTGTCAGACTAGATCATCTCTGAATGATCAAGAGCCGGATCAAAAATTATTGTGAGCACCGAAATCGATCCTGCGTACTCTCTCTGTGAAGTATTTCTGAGAAAATATATGAGTGGTACTAGTATATATCCCCCTGAAGGGGGTCTAATTAATTGGGGGCCTTTCCCTAGCTCCTTCTCTGAACCTGTCCCGTGAATTGAATCCACAATGTATGTGCTGGGGGTTTACGGCTATTTCCGGACCCACGATAACTGGATAACCCGATTCGGCCTCCCAGTTCTTTTCAGACGCTACGGAGTCCGAGCGCCGGACACCGAGGGGTAATGCTGGACCTCCGCG]
[+] EMBL CA755691 [CCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTCTGCCTAGCTAGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACGGCCAAACACAAACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTTAATTAATTATATGCAGGCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTGACGATTTTCATAGTCGTCAGAAAAAAGGGTGCATTGGTTTAATTTTTGTTCTTGGCTGTCAGACTAGATCATCTCTGAATGATCAAGAGCCGGATCAAAAATTATTGTGAGCACCGAAATCGATCCTGCGTACTCTCTCTGTGAAGTATTTCTGAGAAAATATATGAGTGGTACTAGTATATATCCCCCTGAAGGGGGTCTAATTAATTGGGGGCCTTTCCCTAGCTCCTTCTCTGAACCTGTCCCGTGAATTGAATCCACAATGTATGTGCTGGGGGTTTACGGCTATTTCCGGACCCACGATAACTGGATAACCCGATTCGGCCTCCCAGTTCTTTTCAGACGCTACGGAGTCCGAGCGCCGGACACCGAGGGGTAATGCTGGACCTCCGCG]
consensusID : consensus_6659#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence
[ATATGGCTAGCTAATCCATGAGANAGGTCTAGATAGAGAGAGGGAGANATGATCAGTTCTTCAGAAGAGGCTACTACTAGCTATCTAGCTTCATGTTTAACTCTTCTTGGTTTGTGTTTTTGTGTGCTTGTTGGAGTTGTTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATACTTGTTCTCTCATAATCTNATCTTCTTTGAGGGTAGGTAAATATACTT]
[+] EMBL C26486 [ATATGGCTAGCTAATCCATGAGANAGGTCTAGATAGAGAGAGGGAGANATGATCAGTTCTTCAGAAGAGGCTACTACTAGCTATCTAGCTTCATGTTTAACTCTTCTTGGTTTGTGTTTTTGTGTGCTTGTTGGAGTTGTTAGGAGGAAGAGAGGGGTGAGAGGTGAGGCTCACTTCTCTCTCTGTCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATACTTGTTCTCTCATAATCTNATCTTCTTTGAGGGTAGGTAAATATACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6659#0 ----------AACAGTAATGTTCTACAGTTAGTGAGATGTAGAGAGAGATATGGCTAGCT 50
consensus_6659#2 ------------------------------------------------ATATGGCTAGCT 12
consensus_6659#1 CCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTCTGCCTAGCT 60
* ** ******
consensus_6659#0 AATCCATGAGAGAGGTCTAGATAGAGAGAGGGAGAGATGATCAGTTCTTCAGAAGAGGCT 110
consensus_6659#2 AATCCATGAGANAGGTCTAGATAGAGAGAGGGAGANATGATCAGTTCTTCAGAAGAGGCT 72
consensus_6659#1 AGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACGGCCAAACAC 120
* * * ** ** *** * * **** ** * * *
consensus_6659#0 ACTACTAGCTAT--CTAGCTTCAT-GTTTAACTCTTCTTGGTTTGTGTTTTTGTGTGCTT 167
consensus_6659#2 ACTACTAGCTAT--CTAGCTTCAT-GTTTAACTCTTCTTGGTTTGTGTTTTTGTGTGCTT 129
consensus_6659#1 AA-ACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTTAATTAATTATATGCAG 179
* ********* * * ***** * * ** *** **** * ** * ***
consensus_6659#0 GT-TGGAGTTGTTAGGAGGAAGAGAGGGGTGAGA---GGTGAGGCTGACAGAAGAGAGTG 223
consensus_6659#2 GT-TGGAGTTGTTAGGAGGAAGAGAGGGGTGAGA---GGTGAGGCT-------------- 171
consensus_6659#1 GCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTGACGATTTT 239
* * * * * *** ** ** *** * ****
consensus_6659#0 AGCACACATGGTGACTTTCTTGCATGCTGAATGGACTCATGCTTGAAGCTATGTGTGCTC 283
consensus_6659#2 -----------------------------------------------------------C 172
consensus_6659#1 CATAGTCGTCAGAAAAAAGGGTGCATTGGTTTAATTTTTGTTCTTGGCTGTCAGACTAGA 299
consensus_6659#0 ACTTCTCTCTCTG-TCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATA 342
consensus_6659#2 ACTTCTCTCTCTG-TCAGCCATTTGATCTCTCTTTCTCTCTTTCTCCCTCATGTGTTATA 231
consensus_6659#1 TCATCTCTGAATGATCAAGAGCCGGATCAAAAATTATTGTGAGCACCGAAATCGATCCTG 359
* ***** ** *** **** ** * * ** ** * *
consensus_6659#0 CT-GTTCTCTCATA--TCTATCTTCTTTGAGG-TAGT--AATA-TACTTGAGCAAATTAA 395
consensus_6659#2 CTTGTTCTCTCATAATCTNATCTTCTTTGAGGGTAGGTAAATA-TACTT----------- 279
consensus_6659#1 CGTACTCTCTCTGTGAAGTAT-TTCTGAGAAAATATATGAGTGGTACTAGTATATATCCC 418
* ****** ** **** ** ** * * ****
consensus_6659#0 GCTGCTTAATTATTTGTGTATGATGATCAGCTGCTGATCCGGCCTCATTTCTTGCATATA 455
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 CCTGAAGGGGGTCTAATTAATTGGGGGCCTTTCCCTAGCTCCTTCTCTGAACCTGTCCCG 478
consensus_6659#0 TGACCACAACCACATACATGCTTGTTCATTTTTTTTCACAAAGAAAGAGAACAGTTTAAT 515
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 TGAATTGAATCCACAATGTATGTGCTGGGGGTTTACGGCTATTTCCGGACCCACGATAAC 538
consensus_6659#0 TTAATTTCTTGGGGTTTTTGGATCAGTTAATTCGTCTTGAGAGGGGAAGAGATCTCTATG 575
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 TGGATAACCCGATTCGGCCTCCCAGTTCTTTTCAGACGCTACGGAGTCCGAGCGCCGGAC 598
consensus_6659#0 GGTTTTGGAGGTCTGACAGAAGAGAGTGAGCACACACGGTGCTTTCTTAGCATGCAAGAG 635
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 ACCGAGGGGTAATGCTGGACCTCCGCG--------------------------------- 625
consensus_6659#0 CCATGCTGGGAGCTGTGCGTGCTCACTCTCTATCTGTCAGCCGTTCACCATGCCCAATAT 695
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 GATTAATCTCCTTCTCTCAGTTGACAGTAATTTCTTTGCCAGATCTCCTGTTAAATTTTC 755
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 TGCCTAGCTAGCTATTATGCACATGCTTATTATGATGAGCCTGCCAATATCATCTCCACG 815
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 GCAAAACACAAACTAGCTATGATTTGATTCATTATATTTCTTTTCGCTGTTTAATTAATT 875
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 ATATGCAGGCATACACTAGCTAGTTTCCAGCTAGTACAAAGACGAGACGAGGTCGTTCTG 935
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 ACGATTTTCATAGTCGTCAGAAGAAGGTGTGCATTGGTTTAATTTTTGTTCTTGGCTGTC 995
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 AGACTAGATCATCTCTGAATGATCAAGAGCCGGATCAAATAATTATTGTGAGCACCGAAA 1055
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 TCGATCATGCGTACTCTCTCTGTGAAGTATTTCTGAGAAATAATATGAGTGTAGCTAGTA 1115
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 TATATACTCTTGAAGGGTGTCTAATTAATTGGGGTCTCTAGCTAGCTCCTTCTCTGAATC 1175
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 TGTCCATGAATTGAATCTACTATGTATGTGCTGGTGCTTACTGTTATTTCATGTACTACA 1235
consensus_6659#2 ------------------------------------------------------------
consensus_6659#1 ------------------------------------------------------------
consensus_6659#0 TATAATTGATAAATCAATTTAGGCTTTCAGTTTCTTTAAAAAAAAA 1281
consensus_6659#2 ----------------------------------------------
consensus_6659#1 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||