cluster # 6664

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Oryza sativa
cluster # 6664 cluster # 6664 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6664#0 length = 686 sequences # 1

consensus_6664#1 length = 524 sequences # 2
consensus_6664#2 length = 393 sequences # 1

consensusID : consensus_6664#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [GGACCTGCAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAGATCGGNCGGTGGCTCATGTCGCGCGACAATGCGNTCGCCAGGGACAGCGCGGTGAGCGTCGTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATNTGGAGTNCGGAGAGGTGGACCTGGAGCTGNAGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTNCCTCCTTTTTTTTAAAATTATTTTTCGTAACAAAAATTAACACTCTTAGCGTCTNCACCAACTATTAATGCGCAACTANANTTGTTGGGCTTTTTATCCCGATNGTATGTTACTNGGANTTNNGGTTTAAGCCTNTTNNTNTTANAAAAANANCANTNTNTTTTTCTTTNNTTTTTTTGTTTGNTCCTNTGTTTNTTNNTTTTTNTCNTTTTGNATTTTTTTTNCTNNTTTNNTTTNGTNNTGTCTTNNNNNTNTTTTNTNTNNGTGTNTTNTNATTNTNTTTNTTTTGNTNTTTTTGTGTTNTTNTTCGTNGNGTTNGTTTTTTCTNNTTNTTTGTTNNTGTTTGTTANGTNTNTTTCTGTNTNGNTTTTGTTGTTTNGTTNTTNTTNTTTTNTNTTNGTNGTGTTTNGGTGTNGNTGTTTNTTTNTNGNN]

[+] EMBL D43356               [GGACCTGCAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAGATCGGNCGGTGGCTCATGTCGCGCGACAATGCGNTCGCCAGGGACAGCGCGGTGAGCGTCGTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATNTGGAGTNCGGAGAGGTGGACCTGGAGCTGNAGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTNCCTCCTTTTTTTTAAAATTATTTTTCGTAACAAAAATTAACACTCTTAGCGTCTNCACCAACTATTAATGCGCAACTANANTTGTTGGGCTTTTTATCCCGATNGTATGTTACTNGGANTTNNGGTTTAAGCCTNTTNNTNTTANAAAAANANCANTNTNTTTTTCTTTNNTTTTTTTGTTTGNTCCTNTGTTTNTTNNTTTTTNTCNTTTTGNATTTTTTTTNCTNNTTTNNTTTNGTNNTGTCTTNNNNNTNTTTTNTNTNNGTGTNTTNTNATTNTNTTTNTTTTGNTNTTTTTGTGTTNTTNTTCGTNGNGTTNGTTTTTTCTNNTTNTTTGTTNNTGTTTGTTANGTNTNTTTCTGTNTNGNTTTTGTTGTTTNGTTNTTNTTNTTTTNTNTTNGTNGTGTTTNGGTGTNGNTGTTTNTTTNTNGNN]




>consensus_6664#0
GGACCTGCAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGA
CATGCAGATCGGNCGGTGGCTCATGTCGCGCGACAATGCGNTCGCCAGGGACAGCGCGGT
GAGCGTCGTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATNTGGAGTN
CGGAGAGGTGGACCTGGAGCTGNAGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTAC
ATCAGTGTGATCTNCCTCCTTTTTTTTAAAATTATTTTTCGTAACAAAAATTAACACTCT
TAGCGTCTNCACCAACTATTAATGCGCAACTANANTTGTTGGGCTTTTTATCCCGATNGT
ATGTTACTNGGANTTNNGGTTTAAGCCTNTTNNTNTTANAAAAANANCANTNTNTTTTTC
TTTNNTTTTTTTGTTTGNTCCTNTGTTTNTTNNTTTTTNTCNTTTTGNATTTTTTTTNCT
NNTTTNNTTTNGTNNTGTCTTNNNNNTNTTTTNTNTNNGTGTNTTNTNATTNTNTTTNTT
TTGNTNTTTTTGTGTTNTTNTTCGTNGNGTTNGTTTTTTCTNNTTNTTTGTTNNTGTTTG
TTANGTNTNTTTCTGTNTNGNTTTTGTTGTTTNGTTNTTNTTNTTTTNTNTTNGTNGTGT
TTNGGTGTNGNTGTTTNTTTNTNGNN

consensusID : consensus_6664#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 524
fasta sequence

                              [GTGTATGATCATGACGTGCTATCGAGGGACGACATCATGGGGGAGGCCGAGGTGGACCTGCAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAGATCGGCCGGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCGCGGTGAGCGTCGTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATGTGGAGTGCGGAGAGGTGGACCTGGAGCTGGAGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTTCCTCCTTTTTTTAAAATTATTTTTCGTAACAAAAATTAACACTCTTAGCGTCTGCACCAACTATGAATGCGCAACTAAAATGTTGGCTTTTATCCCGATGTATGTTACTGGATTTTGGTGTAGCCTTTGTGTTACTGAAATTGTTGTAGCCTGGGTGATGGTCTTCCTGGACTGTGGTGTCCAAAATGGCAAAATCCATGCTGAACTTTCTCAAAAA]

[-] EMBL CF276660             [GTGTATGATCATGACGTGCTATCGAGGGACGACATCATGGGGGAGGCCGAGGTGGACCTGCAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAGATCGGCCGGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCGCGGTGAGCGTCGTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATGTGGAGTGCGGAGAGGTGGACCTGGAGCTGGAGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTTCCTCCTTTTTTTAAAATTATTTTTCGTAACAAAAATTAACACTCTTAGCGTCTGCACCAACTATGAATGCGCAACTAAAATGTTGGCTTTTATCCCGATGTATGTTACTGGATTTTGGTGTAGCCTTTGTGTTACTGAAATTGTTGTAGCCTGGGTGATGGTCTTCCTGGACTGTGGTGTCCAAAATGGCAAAATCCATGCTGAACTTTCTCAAAAA]
[+] EMBL BM421021             [                                                     GGACCTGCAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAGATCGGCCGGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCGCGGTGAGCGTCGTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATGTGGAGTGCGGAGAGGTGGACCTGGAGCTGGAGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTTCCTCCTTTTTTTAAAATTATTTTTCGTAACCAAAATTAACACTCTTAGCGTCTGCACCAACTATGAATGCGCAACTAAAATGTTGGCTTTTATCCCGATGTATGTTACTGGATTTTGGTGTAGCCTTTGTGTTACTGAAATTGTTGTAGCCTGGGTGATGGTCTTCCTGGACTGTGGTGTCC AAATGGCAAATCCCATGCTGAACTTTCTCAAAAA]




>consensus_6664#1
GTGTATGATCATGACGTGCTATCGAGGGACGACATCATGGGGGAGGCCGAGGTGGACCTG
CAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAG
ATCGGCCGGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCGCGGTGAGCGTC
GTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATGTGGAGTGCGGAGAG
GTGGACCTGGAGCTGGAGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTG
TGATCTTCCTCCTTTTTTTAAAATTATTTTTCGTAACAAAAATTAACACTCTTAGCGTCT
GCACCAACTATGAATGCGCAACTAAAATGTTGGCTTTTATCCCGATGTATGTTACTGGAT
TTTGGTGTAGCCTTTGTGTTACTGAAATTGTTGTAGCCTGGGTGATGGTCTTCCTGGACT
GTGGTGTCCAAAATGGCAAAATCCATGCTGAACTTTCTCAAAAA

consensusID : consensus_6664#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 393
fasta sequence

                              [ATCAGATCGCCGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCCGGTGAGCTTCGTCGCGCAGGGTGAACAGGAGGTCTCCCTGAGCTCCAGAATGTGGAGTCCGGAGAGGTGGACCTGGAGCTGGAGGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTTCCCCCTTTTGTNTAAAATTATTTTTCGTACAAAATTAACCCTCTTAGCGTCTCAACCAACTATGAATGCCAACTAAAATTTGNCTTTTATCCCGATGTATGTTACTGGATTTTGGTTTACCCTTTGTTTACTGAAATTTTTTACCCTGGTGATGTTCTTCCTGGACTGTGGTGTCCAAATGCCAAACCATCTGAACTTTCTCAAAAA]

[+] EMBL BM420744             [ATCAGATCGCCGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCCGGTGAGCTTCGTCGCGCAGGGTGAACAGGAGGTCTCCCTGAGCTCCAGAATGTGGAGTCCGGAGAGGTGGACCTGGAGCTGGAGGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGTGATCTTCCCCCTTTTGTNTAAAATTATTTTTCGTACAAAATTAACCCTCTTAGCGTCTCAACCAACTATGAATGCCAACTAAAATTTGNCTTTTATCCCGATGTATGTTACTGGATTTTGGTTTACCCTTTGTTTACTGAAATTTTTTACCCTGGTGATGTTCTTCCTGGACTGTGGTGTCCAAATGCCAAACCATCTGAACTTTCTCAAAAA]




>consensus_6664#2
ATCAGATCGCCGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCCGGTGAGCT
TCGTCGCGCAGGGTGAACAGGAGGTCTCCCTGAGCTCCAGAATGTGGAGTCCGGAGAGGT
GGACCTGGAGCTGGAGGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGTGT
GATCTTCCCCCTTTTGTNTAAAATTATTTTTCGTACAAAATTAACCCTCTTAGCGTCTCA
ACCAACTATGAATGCCAACTAAAATTTGNCTTTTATCCCGATGTATGTTACTGGATTTTG
GTTTACCCTTTGTTTACTGAAATTTTTTACCCTGGTGATGTTCTTCCTGGACTGTGGTGT
CCAAATGCCAAACCATCTGAACTTTCTCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6664#1      GTGTATGATCATGACGTGCTATCGAGGGACGACATCATGGGGGAGGCCGAGGTGGACCTG 60
consensus_6664#2      ------------------------------------------------------------
consensus_6664#0      -----------------------------------------------------GGACCTG 7
                                                                                  

consensus_6664#1      CAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAG 120
consensus_6664#2      ------------------------------------------------------AT-CAG 5
consensus_6664#0      CAGCCGATGATCACCGCCGCTATGGCGTTCGGTGACCCCGGGCTGCTGTCGGACATGCAG 67
                                                                            ** ***

consensus_6664#1      ATCGGCCGGTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGCGCGGTGAGCGTC 180
consensus_6664#2      ATCGCC--GTGGCTCATGTCGCGCGACAATGCGCTCGCCAGGGACAGC-CGGTGAGCTTC 62
consensus_6664#0      ATCGGNCGGTGGCTCATGTCGCGCGACAATGCGNTCGCCAGGGACAGCGCGGTGAGCGTC 127
                      ****    ************************* ************** ******** **

consensus_6664#1      GTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATGTGGAGTGCGGAGAG 240
consensus_6664#2      GTCGC--GCAGGGTGAA-CAGGAGGTCTCCCTGAG-CTCCAGAATGTGGAGTCCGGAGAG 118
consensus_6664#0      GTCGGCGGCAGGGTGAAGCAGGAGGTCTCCCTGAGGCTGCAGAATNTGGAGTNCGGAGAG 187
                      ****   ********** ***************** ** ****** ****** *******

consensus_6664#1      GTGGACCTGGAGCTGGAG-TGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGT 299
consensus_6664#2      GTGGACCTGGAGCTGGAGGTGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGT 178
consensus_6664#0      GTGGACCTGGAGCTGNAG-TGGATTGCTCTCAACCAGTAGAGACTTCTGGCTACATCAGT 246
                      *************** ** *****************************************

consensus_6664#1      GTGATCTTCCTCCTTTT-TTTAAAATTATTTTTCGTAACAAAAATTAACACTCTTAGCGT 358
consensus_6664#2      GTGATCTTCCCCCTTTTGTNTAAAATTATTTTTCGTAC--AAAATTAACCCTCTTAGCGT 236
consensus_6664#0      GTGATCTNCCTCCTTTTTTTTAAAATTATTTTTCGTAACAAAAATTAACACTCTTAGCGT 306
                      ******* ** ****** * *****************   ********* **********

consensus_6664#1      CTGCACCAACTATGAATGCGCAACTAAAATG-TTGG--CTTTTATCCCGATG-TATGTTA 414
consensus_6664#2      CTCAACCAACTATGAATGC-CAACTAAAAT--TTGN--CTTTTATCCCGATG-TATGTTA 290
consensus_6664#0      CTNCACCAACTATTAATGCGCAACTANANTTGTTGGGCTTTTTATCCCGATNGTATGTTA 366
                      **  ********* ***** ****** * *  ***    ************  *******

consensus_6664#1      CTGG--ATTTTGGTGTA---GCCTTTGTGTTACTGAAATTGTTGTAGCCTGGGTGATGGT 469
consensus_6664#2      CTGG--ATTTTGGTTTA---CCCTTTGT-TTACTGAAATTTTT-TACCCTGG-TGATGTT 342
consensus_6664#0      CTNGGANTTNNGGTTTAAGCCTNTTNNTNTTANAAAAANANCANTNTNTTTTTCTTTNNT 426
                      ** *   **  *** **      **  * ***   ***      *    *      *  *

consensus_6664#1      CTTCCTGGACTGTGGTGTCCAAAATGGCAAAATCCATGCTGAACTTTCTCAAAAA----- 524
consensus_6664#2      CTTCCTGGACTGTGGTGTCCAAA-TGCCAAA--CCAT-CTGAACTTTCTCAAAAA----- 393
consensus_6664#0      TTTTTTGTTTGNTCCTNTGTTTNTTNNTTTTTNTCNTTTTGNATTTTTTTTNCTNNTTTN 486
                       **  **     *  * *      *         * *  ** * *** *           

consensus_6664#1      ------------------------------------------------------------
consensus_6664#2      ------------------------------------------------------------
consensus_6664#0      NTTTNGTNNTGTCTTNNNNNTNTTTTNTNTNNGTGTNTTNTNATTNTNTTTNTTTTGNTN 546
                                                                                  

consensus_6664#1      ------------------------------------------------------------
consensus_6664#2      ------------------------------------------------------------
consensus_6664#0      TTTTTGTGTTNTTNTTCGTNGNGTTNGTTTTTTCTNNTTNTTTGTTNNTGTTTGTTANGT 606
                                                                                  

consensus_6664#1      ------------------------------------------------------------
consensus_6664#2      ------------------------------------------------------------
consensus_6664#0      NTNTTTCTGTNTNGNTTTTGTTGTTTNGTTNTTNTTNTTTTNTNTTNGTNGTGTTTNGGT 666
                                                                                  

consensus_6664#1      --------------------
consensus_6664#2      --------------------
consensus_6664#0      GTNGNTGTTTNTTTNTNGNN 686