These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1354 fasta sequence [CCAATCCTTCGTCTTGCTTGGCTACCTATCTTGCAGGGAGCTCATGCCGCTCGCGGGCATGGCTCTCCTCCAGCTCCGGGAGCACTGCTCCCTCCTCCCAAATCCCCTCAGACCCGCGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCTCAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGGTGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGGCGCGTTCCTCTTCCCCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGAGGCCGGCGGGAAGGTCAGCCTCGAGTCCATCGTGGTGGCCATCGACGACTTCAACAACCGCAACCCCTTCTTCGTGGCCGGGGCGGTGTTCGTCTGGCTCGTGGCGATCCCGCTGGTGCAGGAGTACTTCAAGAAGTACAAGGCGGTGAGCGCCATCGACGCGTTCCGCAAGCTCCGCGACGAGCCGGGGGCGCAGCTGCTGGACATCAGGAGGGGGAAGAGCGTGCGGTTCATGGCGTCGCCGAACCTGAGGCTCGTCGAGAAGAGCGCCGTGCAGGTGGAGTTCGACGAGGAAGACGAGGAGGGATTCGTCAAGGAGGTGCTGGCTAGATTCCCTGACCCGGCGAACACCGTCGTCTGCGTTCTTGACAACTTTGATGGTAATTCTATGAAAGTGGCCGAGCTGCTGTTCAACAATGGTTTCAAGGAAGCTTATGCAATCAAAGGTGGGCTGAGAGGCCCAGAAGGGTGGCAGGCAATTCAAGAGAAATATCTTCCCCCATCTGTTCATGTTGTTCCAAGGAAGAAGAGCAAAGAATCAGAGGACTCTGATGTTAGCGCTGATGGAACAGATGACCAGCTGGAAGTGAATGGAAAATTATTAGCTACCCCTAATAGTTCTGTAGTCAATACAGGCAATGGAGCTGAAGATAGTACCGAGAAGCCCAATGGGAGTACTTCAGCCATAAAGCGTGCAAGCCGGAGACCATTATCACCATATCCAAATTACCCTGACTTGAAGCCACCATCATCGCCGACACCATCAAAGCCAGAGAGGTAGTAGAACAATAAAGGGAAATAAGAAATCAGACAAAGAGAAGAAATCAGAGGACAAGGGACTAATGTTGCAAGAACAGTCAGTCATTTCCGGCATAACCATTTTGATATACTTGTAATCGTGAATATAGAGGCGATCAATGAGGTTCACAATGCAGAAGACCATTGCTGTTACTGACATCATGGTGAATCTTATGTTTGTTGGATGTTGTAAAAAAAAAAAAAAAAA] [+] EMBL AK070087 [CCAATCCTTCGTCTTGCTTGGCTACCTATCTTGCAGGGAGCTCATGCCGCTCGCGGGCATGGCTCTCCTCCAGCTCCGGGAGCACTGCTCCCTCCTCCCAAATCCCCTCAGACCCGCGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCTCAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGGTGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGGCGCGTTCCTCTTCCCCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGAGGCCGGCGGGAAGGTCAGCCTCGAGTCCATCGTGGTGGCCATCGACGACTTCAACAACCGCAACCCCTTCTTCGTGGCCGGGGCGGTGTTCGTCTGGCTCGTGGCGATCCCGCTGGTGCAGGAGTACTTCAAGAAGTACAAGGCGGTGAGCGCCATCGACGCGTTCCGCAAGCTCCGCGACGAGCCGGGGGCGCAGCTGCTGGACATCAGGAGGGGGAAGAGCGTGCGGTTCATGGCGTCGCCGAACCTGAGGCTCGTCGAGAAGAGCGCCGTGCAGGTGGAGTTCGACGAGGAAGACGAGGAGGGATTCGTCAAGGAGGTGCTGGCTAGATTCCCTGACCCGGCGAACACCGTCGTCTGCGTTCTTGACAACTTTGATGGTAATTCTATGAAAGTGGCCGAGCTGCTGTTCAACAATGGTTTCAAGGAAGCTTATGCAATCAAAGGTGGGCTGAGAGGCCCAGAAGGGTGGCAGGCAATTCAAGAGAAATATCTTCCCCCATCTGTTCATGTTGTTCCAAGGAAGAAGAGCAAAGAATCAGAGGACTCTGATGTTAGCGCTGATGGAACAGATGACCAGCTGGAAGTGAATGGAAAATTATTAGCTACCCCTAATAGTTCTGTAGTCAATACAGGCAATGGAGCTGAAGATAGTACCGAGAAGCCCAATGGGAGTACTTCAGCCATAAAGCGTGCAAGCCGGAGACCATTATCACCATATCCAAATTACCCTGACTTGAAGCCACCATCATCGCCGACACCATCAAAGCCAGAGAGGTAGTAGAACAATAAAGGGAAATAAGAAATCAGACAAAGAGAAGAAATCAGAGGACAAGGGACTAATGTTGCAAGAACAGTCAGTCATTTCCGGCATAACCATTTTGATATACTTGTAATCGTGAATATAGAGGCGATCAATGAGGTTCACAATGCAGAAGACCATTGCTGTTACTGACATCATGGTGAATCTTATGTTTGTTGGATGT ] [+] EMBL AK104708 [ CAATCCTTCGTCTTGCTTGGCTACCTATCTTGCAGGGAGCTCATGCCGCTCGCGGGCATGGCTCTCCTCCAGCTCCGGGAGCACTGCTCCCTCCTCCCAAATCCCCTCAGACCCGCGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCTCAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGGTGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGGCGCGTTCCTCTTCCCCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGAGGCCGGCGGGAAGGTCAGCCTCGAGTCCATCGTGGTGGCCATCGACGACTTCAACAACCGCAACCCCTTCTTCGTGGCCGGGGCGGTGTTCGTCTGGCTCGTGGCGATCCCGCTGGTGCAGGAGTACTTCAAGAAGTACAAGGCGGTGAGCGCCATCGACGCGTTCCGCAAGCTCCGCGACGAGCCGGGGGCGCAGCTGCTGGACATCAGGAGGGGGAAGAGCGTGCGGTTCATGGCGTCGCCGAACCTGAGGCTCGTCGAGAAGAGCGCCGTGCAGGTGGAGTTCGACGAGGAAGACGAGGAGGGATTCGTCAAGGAGGTGCTGGCTAGATTCCCTGACCCGGCGAACACCGTCGTCTGCGTTCTTGACAACTTTGATGGTAATTCTATGAAAGTGGCCGAGCTGCTGTTCAACAATGGTTTCAAGGAAGCTTATGCAATCAAAGGTGGGCTGAGAGGCCCAGAAGGGTGGCAGGCAATTCAAGAGAAATATCTTCCCCCATCTGTTCATGTTGTTCCAAGGAAGAAGAGCAAAGAATCAGAGGACTCTGATGTTAGCGCTGATGGAACAGATGACCAGCTGGAAGTGAATGGAAAATTATTAGCTACCCCTAATAGTTCTGTAGTCAATACAGGCAATGGAGCTGAAGATAGTACCGAGAAGCCCAATGGGAGTACTTCAGCCATAAAGCGTGCAAGCCGGAGACCATTATCACCATATCCAAATTACCCTGACTTGAAGCCACCATCATCGCCGACACCATCAAAGCCAGAGAGGTAGTAGAACAATAAAGGGAAATAAGAAATCAGACAAAGAGAAGAAATCAGAGGACAAGGGACTAATGTTGCAAGAACAGTCAGTCATTTCCGGCATAACCATTTTGATATACTTGTAATCGTGAATATAGAGGCGATCAATGAGGTTCACAATGCAGAAGACCATTGC ] [-] EMBL CA760103 [ GGCGAACACCGTNGTNTGCGTTCTTGACAACTTTGATGGTAATTCTATGAAAGTGGCCGAGCTGCTGTTCAACAATGGTTTCAAGGAAGCTTATGCAATCAAAGGTGGGCTGAGAGGCCCAGAAGGGTGGCAGGCAATTCAAGAGAAATATCTTCCCCCATCTGTTCATGTTGTTCCAAGGAAGAAGAGCAAAGAATCAGAGGACTCTGATGTTAGCGCTGATGGAACAGATGACCAGCTGGAAGTGAATGGAAAATTATTAGCTACCCCTAATAGTTCTGTAGTCAATACAGGCAATGGAGCTGAAGATAGTACCGAGAAGCCCAATGGGAGTACTTCAGCCATAAAGCGTGCAAGCCGGAGACCATTATCACCATATCCAAATTACCCTGACTTGAAGCCACCATCATCGCCGACACCATCAAAGCCAGAGAGGTAGCAGAACAATGAAGGGAAATAAGAAATCAGACAAAGAGAAGAAATCAGAGGACAAGGGACTAATGTTGCAAGAACAGTCAGTCATTTCCGGCATAACCATTTTGATATACTTGTAATCGTGAATATAGAGGCGATCAATGAGGTTCCCAATGCAGAAGACCATTGCTGTTACTGACATCATGGTGAATCTTATGTTTGTTGGATGTTGTAAAAAAAAAAAAAAAAA] consensusID : consensus_6671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [GGGAACGAGGANNCTTGCAGGGAGGCTCATGCCGCTCGCGGGGCATGGCTCTCCTCCAGCTCCGAAGAGGCACTGCTCCCTCCCCCAAATCCCCTCAGACCCGCGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCTCAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGGTGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGACGCGTTCCTCTTCCCCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGANGCCGGCGGGAAGGTCACCTCNAATCCATCGTGGTGGCCATCNACGACTTCAACAACCGCAACCCCTTCTTCCTTGGCCGGGCGTGTCGTCTGGCTCGTGGCA] [+] EMBL AA751842 [GGGAACGAGGANNCTTGCAGGGAGGCTCATGCCGCTCGCGGGGCATGGCTCTCCTCCAGCTCCGAAGAGGCACTGCTCCCTCCCCCAAATCCCCTCAGACCCGCGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCTCAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGGTGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGACGCGTTCCTCTTCCCCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGANGCCGGCGGGAAGGTCACCTCNAATCCATCGTGGTGGCCATCNACGACTTCAACAACCGCAACCCCTTCTTCCTTGGCCGGGCGTGTCGTCTGGCTCGTGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6671#0 CCAATCCTTCGTCTTGCTTGGCTACCTATCTTGCAGGGAG-CTCATGCCGCTCGCGGG-C 58 consensus_6671#1 ----------------GGGAACGAGGANNCTTGCAGGGAGGCTCATGCCGCTCGCGGGGC 44 * * *********** ***************** * consensus_6671#0 ATGGCTCTCCTCCAGCTCCG--GGAGCACTGCTCCCTCCTCCCAAATCCCCTCAGACCCG 116 consensus_6671#1 ATGGCTCTCCTCCAGCTCCGAAGAGGCACTGCTCCCTCC-CCCAAATCCCCTCAGACCCG 103 ******************** * ************** ******************** consensus_6671#0 CGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCT 176 consensus_6671#1 CGAGGAATCCTCGCAAGAACCGGCTCTTGCCGCCAAATTCGGCCAAGGTTCCCGGCTTCT 163 ************************************************************ consensus_6671#0 CAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGG 236 consensus_6671#1 CAAGAATCTCAATCCACGGTGCGCCGCCCGCGCCCGAGGCCGCAATCTTGGAGGAAAGGG 223 ************************************************************ consensus_6671#0 TGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGGCGCGTTCCTCTTCC 296 consensus_6671#1 TGGAGGTGGATGTGGATGTGGAGGCCGCGGTTGTGCCGTGGAGGGACGCGTTCCTCTTCC 283 ********************************************* ************** consensus_6671#0 CCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGAGGCCGGCG 356 consensus_6671#1 CCGTCGCCGCCGCCGTCGTCGCGTCCTGGCCGCTCCCTTCGCTCGCGGCGGANGCCGGCG 343 **************************************************** ******* consensus_6671#0 GGAAGGTCAGCCTCGAGTCCATCGTGGTGGCCATCGACGACTTCAACAACCGCAACCCCT 416 consensus_6671#1 GGAAGGTCA-CCTCNAATCCATCGTGGTGGCCATCNACGACTTCAACAACCGCAACCCCT 402 ********* **** * ****************** ************************ consensus_6671#0 TCTTCGTGGCCGGGGCGGTGTTCGTCTGGCTCGTGGCGATCCCGCTGGTGCAGGAGTACT 476 consensus_6671#1 TCTTCCTTGGCCGGGCG-TGT-CGTCTGGCTCGTGGCA---------------------- 438 ***** * * * ***** *** *************** consensus_6671#0 TCAAGAAGTACAAGGCGGTGAGCGCCATCGACGCGTTCCGCAAGCTCCGCGACGAGCCGG 536 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 GGGCGCAGCTGCTGGACATCAGGAGGGGGAAGAGCGTGCGGTTCATGGCGTCGCCGAACC 596 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 TGAGGCTCGTCGAGAAGAGCGCCGTGCAGGTGGAGTTCGACGAGGAAGACGAGGAGGGAT 656 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 TCGTCAAGGAGGTGCTGGCTAGATTCCCTGACCCGGCGAACACCGTCGTCTGCGTTCTTG 716 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 ACAACTTTGATGGTAATTCTATGAAAGTGGCCGAGCTGCTGTTCAACAATGGTTTCAAGG 776 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 AAGCTTATGCAATCAAAGGTGGGCTGAGAGGCCCAGAAGGGTGGCAGGCAATTCAAGAGA 836 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 AATATCTTCCCCCATCTGTTCATGTTGTTCCAAGGAAGAAGAGCAAAGAATCAGAGGACT 896 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 CTGATGTTAGCGCTGATGGAACAGATGACCAGCTGGAAGTGAATGGAAAATTATTAGCTA 956 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 CCCCTAATAGTTCTGTAGTCAATACAGGCAATGGAGCTGAAGATAGTACCGAGAAGCCCA 1016 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 ATGGGAGTACTTCAGCCATAAAGCGTGCAAGCCGGAGACCATTATCACCATATCCAAATT 1076 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 ACCCTGACTTGAAGCCACCATCATCGCCGACACCATCAAAGCCAGAGAGGTAGTAGAACA 1136 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 ATAAAGGGAAATAAGAAATCAGACAAAGAGAAGAAATCAGAGGACAAGGGACTAATGTTG 1196 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 CAAGAACAGTCAGTCATTTCCGGCATAACCATTTTGATATACTTGTAATCGTGAATATAG 1256 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 AGGCGATCAATGAGGTTCACAATGCAGAAGACCATTGCTGTTACTGACATCATGGTGAAT 1316 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 CTTATGTTTGTTGGATGTTGTAAAAAAAAAAAAAAAAA 1354 consensus_6671#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||