These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 539 fasta sequence [GCACGCAAGGTCGGCACCCACGGNTGCCATGATTCTCCCTCATTGATCTTGACGGCGAACCCATCCGCTGCCCGACGCCCATCGCCCGTTGCAACGTCCAGGCCACGCTCGCCAGGGAGAACTCCAACATCATCGGCACCTGCTCCTTCTGCCCGGTCAGCGAGATGTTCACCAGCGTGGTGGCGACCACCCCTGTGCTCGGCGCCGGCGGCGACAACACTACCGATGGATTCACCTGCTCCGGCATTAGCTGCTGTGATGCCCATCGCCATCGGCTGCCCCTCCTACCTCGTGCAGTTCCTTAGCCTGGACTAGAACTAGGAGCTC-AGCGGCAAGCTACCCATCGCCGTGCGCATCGCCGAGCGGGGCTGGTTCGAGGGCGTCGCTGCAAGCTCCTCAACAGC-AGCTCAGACGCCGCCACTCGCCGGTCCCGGTGGTGCTAGAGCAAGTATGCGGTTACGGGAACCTCAAGGCCCCCCAAGGCGGATAACGGTCCCCGTGCCAAACCGGCGGCGGCGCCTATTGTGAATAAGGGCCCG] [+] EMBL BE230523 [GCACGCAAGGTCGGCACCCACGGNTGCCATGATTCTCCCTCATTGATCTTGACGGCGAACCCATCCGCTGCCCGACGCCCATCGCCCGTTGCAACGTCCAGGCCACGCTCGCCAGGGAGAACTCCAACATCATCGGCACCTGCTCCTTCTGCCCGGTCAGCGAGATGTTCACCAGCGTGGTGGCGACCACCCCTGTGCTCGGCGCCGGCGGCGACAACACTACCGATGGATTCACCTGCTCCGGCATTAGCTGCTGTGATGCCCATCG CATCGGCTGCCCCTCCTACCTCGTGCAGTT CTTCGCCTGGACTAGAACTAGGAGCTCAANCGGCAAGCTACCCATCGCCGTGCGCATCGCCGAGCGGGGCTGGTTCGAGGGCGTCNCTGCAATCTCCTCAACAAC ATCTCATACGCCCGCACTCGCCGGTCCCGGTGGTGCTATANCAA TATGCGGTTACGGGAACCTCAAGGCCCCCCAAGGCGGATAACGGTCCCCGTGCCAAACCGGCGGCGGCGCCTATTGTGAATAAGGGCCCG] [+] EMBL BE230499 [ CACGCAAGGTCGGCACCCACGGGTGCCATGATTCTCCCTCATTGATCTTGACGGCGAACCCATCCGCTGCCCGACGCCCATCGCCCGTTGCAACGTCCAGGCCACGCTCGCCAGGGAGAACTCCAACATCATCGGCACCTGCTCCTTCTGCCCGGTCAGCGAGATGTTCACCAGCGTGGTGGCGACCACCCCTGTGCTCGGCGCCGGCGGCGACAACACTACCGATGGATTCACCTGCTCCGGCATTAGCTGCTGTGATGCCCATCGCCATCGGCTGCCCCTCCTACCTCGTGCAGTTCCTTAGCCTGGACTAGAACTAGGAGCTC AGCGGCAAGCTACCCATCGCCGTGCGCATCGCCGAGCGGGGCTGGTTCGAGGGCGTCGCTGCAAGCTCCTCAACAGC AGCTCAGACGCCGCCACTCGCCGGTCCCGGTGGTGCTAGAGCAAGTAGGCGGTTAC ] [+] EMBL BE230166 [ CACGCAAGGTCGGCACCCACGGCTGCCATGATTCTCCCTCATTGATCTTGACGGCGAACCCATCCGCTGCCCGACGCCCATCGCCCGTTGCAACGTCCAGGCCACGCTCGCCAGGGAGAACTCCAACATCATCGGCACCTGCTCCTTCTGCCCGGTCAGCGAGATGTTCACCAGCGTGGTGGCGACCACCCCTGTGCTCGGCGCCGGCGGCGACAACACTACCGATGGATTCACCTGCTCCGGCATTAGCTGCTGTGATGCCCATCGCCATCGGCTGCCCCTCCTACCTCGTGCAGTTCCTTAGCCTGGACTAGAACTAGGAGCTC AGCGGCAAGCTACCCATCGCCGTGCGCATCGCCGAGCGGGGCTGGTTCGAGGGCGTCGCTGCAAGCTCCTCAACAGCAAGCTCAGACGCCGCCACTCGCCGGTCCCGGTGGTGCTAGAGCAgt ] consensusID : consensus_6675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [GCCNAATTCGGCACGANCGCACGCAAGGTCNGCANCACGGCTGCCATGATTCTCCCTCATTGATCTTGACGGCGAATCCATCCGCTGCCCGACGCCCATCGCCGTTGCAACATCCAGGCCACGCTCGCCAGGGGAGAANTCCAACATCATCNGCACCTGCTCCTTCTGCCCGGTCAGCGANATGTTCACCAGCGTGGTGGCGAACACCCTGTNCTCNGCGCCNGGGGGGAAAACACTACGATGGATTCACTGCTCCNGNATTAACTGCTGTTATTCCCNTCCCAATCGGNTGCCCCTCCTACCTCGGGGNGTTCCTTAGCCTGAACTAAAACTAGGACNCACGGGGNNGNTACCCTCNCCCTNCGCATNTCCCAAAAGGGGGNNGT] [+] EMBL BE228299 [GCCNAATTCGGCACGANCGCACGCAAGGTCNGCANCACGGCTGCCATGATTCTCCCTCATTGATCTTGACGGCGAATCCATCCGCTGCCCGACGCCCATCGCCGTTGCAACATCCAGGCCACGCTCGCCAGGGGAGAANTCCAACATCATCNGCACCTGCTCCTTCTGCCCGGTCAGCGANATGTTCACCAGCGTGGTGGCGAACACCCTGTNCTCNGCGCCNGGGGGGAAAACACTACGATGGATTCACTGCTCCNGNATTAACTGCTGTTATTCCCNTCCCAATCGGNTGCCCCTCCTACCTCGGGGNGTTCCTTAGCCTGAACTAAAACTAGGACNCACGGGGNNGNTACCCTCNCCCTNCGCATNTCCCAAAAGGGGGNNGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6675#0 ------------------GCACGCAAGGTCGGCACCCACGGNTGCCATGATTCTCCCTCA 42 consensus_6675#1 GCCNAATTCGGCACGANCGCACGCAAGGTCNGCANC-ACGGCTGCCATGATTCTCCCTCA 59 ************ *** * **** ****************** consensus_6675#0 TTGATCTTGACGGCGAACCCATCCGCTGCCCGACGCCCATCGCCCGTTGCAACGTCCAGG 102 consensus_6675#1 TTGATCTTGACGGCGAATCCATCCGCTGCCCGACGCCCATCGCC-GTTGCAACATCCAGG 118 ***************** ************************** ******** ****** consensus_6675#0 CCACGCTCGCCAGGG-AGAACTCCAACATCATCGGCACCTGCTCCTTCTGCCCGGTCAGC 161 consensus_6675#1 CCACGCTCGCCAGGGGAGAANTCCAACATCATCNGCACCTGCTCCTTCTGCCCGGTCAGC 178 *************** **** ************ ************************** consensus_6675#0 GAGATGTTCACCAGCGTGGTGGCGACCACCCCTGTGCTCGGCGCCGGCGGCGACAACACT 221 consensus_6675#1 GANATGTTCACCAGCGTGGTGGCGAACACCC-TGTNCTCNGCGCCNGGGGGGAAAACACT 237 ** ********************** ***** *** *** ***** * ** ** ****** consensus_6675#0 ACCGATGGATTCACCTGCTCCGGCATTAGCTGCTGTGATGCCCATCGCCATCGGCTGCCC 281 consensus_6675#1 AC-GATGGATTCAC-TGCTCCNGNATTAACTGCTGTTATTCCCNTCCCAATCGGNTGCCC 295 ** *********** ****** * **** ******* ** *** ** * ***** ***** consensus_6675#0 CTCCTACCTCGTGCAGTTCCTTAGCCTGGACTAGAACTAGGAGCTCAGCGGCAAGCTACC 341 consensus_6675#1 CTCCTACCTCGGGGNGTTCCTTAGCCTGAACTAAAACTAGGA-CNCACGGGGNNGNTACC 354 *********** * ************* **** ******** * ** ** * **** consensus_6675#0 CATCGCCGTGCGCATCGCC-GAGCGGGGCTGGTTCGAGGGCGTCGCTGCAAGCTCCTCAA 400 consensus_6675#1 C-TCNCCCTNCGCATNTCCCAAAAGGGGGNNGT--------------------------- 386 * ** ** * ***** ** * **** ** consensus_6675#0 CAGCAGCTCAGACGCCGCCACTCGCCGGTCCCGGTGGTGCTAGAGCAAGTATGCGGTTAC 460 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 GGGAACCTCAAGGCCCCCCAAGGCGGATAACGGTCCCCGTGCCAAACCGGCGGCGGCGCC 520 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 TATTGTGAATAAGGGCCCG 539 consensus_6675#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||