cluster # 668

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Oryza sativa
cluster # 668 cluster # 668 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_668#0 length = 814 sequences # 1

consensus_668#1 length = 441 sequences # 1

consensusID : consensus_668#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 814
fasta sequence

                              [TCCCTCGCATCCTGCTCGTCGCCGGCAGCGCCGACGCATTCGTCCATGGCGCCGCCGTTAGTCCATACCTTGAAGAGCTCGTCGTAGTCGGGGCTACCCATCTGCTCCTCCTCATCTTCCCTGTTCGTCTCGTTATTACGAGCCGAGCTGGAGCTCTCGCCGGCGGCGAGGCTGACCGCTTGTGCGGCTCCGGCCGCGGCGGCGGGCGGCGGGGTGGTGCGGCTGAGGAACGAGGAGTTCTTGAGCGACGGGAGGAGGCTGCCGGCGGTGGAGATGAGCTGGACGATGAGGCATGTCAGGTCGGCGTTGACAAGCTGCTGCTCCGGCGTCGCCGCCGACGACGACGAGGCGCGGCGGCCGGCCATGGATCGGATGACGTCCTTGACCTGCCGGATCTTCTCCTCGATGAAGGTGAGGTTGTCCAGCATCGTGTCCGGGCTCCAGTCCATGTGCTGGATGCTAACCGACGGCAGCAGCTGCTGCGGCGGCGGCGGCGCCATGCCGAGGAGAGCGTCATCCGCCATGAACGGGTAGAAGAGAGGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGATCCATTGCAAGCTTCTGAATAATCTCGCGTGATCTTTATTAGGAAAAGAGATGGCGCCTCTGAAATCTGCAGAGGAAGAGGAATCAAGATCGTTAGCCAGTTCAAAGATTGTTCTTGTTTTTTTTCCCCCAAGAAACTATTTGATGTTATTTTTGAGTTGGTTGAAAAGTCAAGAAACTGGGAACTAATTAGTAGTAGTAATCTACTAGATTAT]

[+] EMBL AK110904             [TCCCTCGCATCCTGCTCGTCGCCGGCAGCGCCGACGCATTCGTCCATGGCGCCGCCGTTAGTCCATACCTTGAAGAGCTCGTCGTAGTCGGGGCTACCCATCTGCTCCTCCTCATCTTCCCTGTTCGTCTCGTTATTACGAGCCGAGCTGGAGCTCTCGCCGGCGGCGAGGCTGACCGCTTGTGCGGCTCCGGCCGCGGCGGCGGGCGGCGGGGTGGTGCGGCTGAGGAACGAGGAGTTCTTGAGCGACGGGAGGAGGCTGCCGGCGGTGGAGATGAGCTGGACGATGAGGCATGTCAGGTCGGCGTTGACAAGCTGCTGCTCCGGCGTCGCCGCCGACGACGACGAGGCGCGGCGGCCGGCCATGGATCGGATGACGTCCTTGACCTGCCGGATCTTCTCCTCGATGAAGGTGAGGTTGTCCAGCATCGTGTCCGGGCTCCAGTCCATGTGCTGGATGCTAACCGACGGCAGCAGCTGCTGCGGCGGCGGCGGCGCCATGCCGAGGAGAGCGTCATCCGCCATGAACGGGTAGAAGAGAGGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGATCCATTGCAAGCTTCTGAATAATCTCGCGTGATCTTTATTAGGAAAAGAGATGGCGCCTCTGAAATCTGCAGAGGAAGAGGAATCAAGATCGTTAGCCAGTTCAAAGATTGTTCTTGTTTTTTTTCCCCCAAGAAACTATTTGATGTTATTTTTGAGTTGGTTGAAAAGTCAAGAAACTGGGAACTAATTAGTAGTAGTAATCTACTAGATTAT]




>consensus_668#0
TCCCTCGCATCCTGCTCGTCGCCGGCAGCGCCGACGCATTCGTCCATGGCGCCGCCGTTA
GTCCATACCTTGAAGAGCTCGTCGTAGTCGGGGCTACCCATCTGCTCCTCCTCATCTTCC
CTGTTCGTCTCGTTATTACGAGCCGAGCTGGAGCTCTCGCCGGCGGCGAGGCTGACCGCT
TGTGCGGCTCCGGCCGCGGCGGCGGGCGGCGGGGTGGTGCGGCTGAGGAACGAGGAGTTC
TTGAGCGACGGGAGGAGGCTGCCGGCGGTGGAGATGAGCTGGACGATGAGGCATGTCAGG
TCGGCGTTGACAAGCTGCTGCTCCGGCGTCGCCGCCGACGACGACGAGGCGCGGCGGCCG
GCCATGGATCGGATGACGTCCTTGACCTGCCGGATCTTCTCCTCGATGAAGGTGAGGTTG
TCCAGCATCGTGTCCGGGCTCCAGTCCATGTGCTGGATGCTAACCGACGGCAGCAGCTGC
TGCGGCGGCGGCGGCGCCATGCCGAGGAGAGCGTCATCCGCCATGAACGGGTAGAAGAGA
GGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGA
TCCATTGCAAGCTTCTGAATAATCTCGCGTGATCTTTATTAGGAAAAGAGATGGCGCCTC
TGAAATCTGCAGAGGAAGAGGAATCAAGATCGTTAGCCAGTTCAAAGATTGTTCTTGTTT
TTTTTCCCCCAAGAAACTATTTGATGTTATTTTTGAGTTGGTTGAAAAGTCAAGAAACTG
GGAACTAATTAGTAGTAGTAATCTACTAGATTAT

consensusID : consensus_668#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 441
fasta sequence

                              [CTTNTTCCGCGGCGGCGGCNCCATTCCGAGAAGGCNTTATTCCCCCATGACCGGTTAGAAAAGAGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGATCCATTGCAAGCTTCTGAATANTCTCGCGTGATCTTTATTAGGAAAAGAGNTGGCGCCTCTGAAATCCAATCAAATCAAGCAGGGGAAATNACTCCCAGCTCGTCGCCATGGACGCCTAGCCGTGTCTCCACACCAAGNACAGCAGNACAGGAGAGNAGAGGCGAGCGAGAAAGCTAGAGGAGATCGAAGGAAGCATCCGGGAAGCTGGGGGAGCTAGCTAAGGCGTGAGCTGTAGGTCAAATTAATTTGGGGGTGGGATGGGCTCCCGATTCCAAGATCAGGATCGAGAGAGGAGGGGGACGGATCGGTCGTCGATT]

[-] EMBL C91637               [CTTNTTCCGCGGCGGCGGCNCCATTCCGAGAAGGCNTTATTCCCCCATGACCGGTTAGAAAAGAGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGATCCATTGCAAGCTTCTGAATANTCTCGCGTGATCTTTATTAGGAAAAGAGNTGGCGCCTCTGAAATCCAATCAAATCAAGCAGGGGAAATNACTCCCAGCTCGTCGCCATGGACGCCTAGCCGTGTCTCCACACCAAGNACAGCAGNACAGGAGAGNAGAGGCGAGCGAGAAAGCTAGAGGAGATCGAAGGAAGCATCCGGGAAGCTGGGGGAGCTAGCTAAGGCGTGAGCTGTAGGTCAAATTAATTTGGGGGTGGGATGGGCTCCCGATTCCAAGATCAGGATCGAGAGAGGAGGGGGACGGATCGGTCGTCGATT]




>consensus_668#1
CTTNTTCCGCGGCGGCGGCNCCATTCCGAGAAGGCNTTATTCCCCCATGACCGGTTAGAA
AAGAGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCG
CGATCCATTGCAAGCTTCTGAATANTCTCGCGTGATCTTTATTAGGAAAAGAGNTGGCGC
CTCTGAAATCCAATCAAATCAAGCAGGGGAAATNACTCCCAGCTCGTCGCCATGGACGCC
TAGCCGTGTCTCCACACCAAGNACAGCAGNACAGGAGAGNAGAGGCGAGCGAGAAAGCTA
GAGGAGATCGAAGGAAGCATCCGGGAAGCTGGGGGAGCTAGCTAAGGCGTGAGCTGTAGG
TCAAATTAATTTGGGGGTGGGATGGGCTCCCGATTCCAAGATCAGGATCGAGAGAGGAGG
GGGACGGATCGGTCGTCGATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_668#0      TCCCTCGCATCCTGCTCGTCGCCGGCAGCGCCGACGCATTCGTCCATGGCGCCGCCGTTA 60
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      GTCCATACCTTGAAGAGCTCGTCGTAGTCGGGGCTACCCATCTGCTCCTCCTCATCTTCC 120
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      CTGTTCGTCTCGTTATTACGAGCCGAGCTGGAGCTCTCGCCGGCGGCGAGGCTGACCGCT 180
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      TGTGCGGCTCCGGCCGCGGCGGCGGGCGGCGGGGTGGTGCGGCTGAGGAACGAGGAGTTC 240
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      TTGAGCGACGGGAGGAGGCTGCCGGCGGTGGAGATGAGCTGGACGATGAGGCATGTCAGG 300
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      TCGGCGTTGACAAGCTGCTGCTCCGGCGTCGCCGCCGACGACGACGAGGCGCGGCGGCCG 360
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      GCCATGGATCGGATGACGTCCTTGACCTGCCGGATCTTCTCCTCGATGAAGGTGAGGTTG 420
consensus_668#1      ------------------------------------------------------------
                                                                                 

consensus_668#0      TCCAGCATCGTGTCCGGGCTCCAGTCCATGTGCTGGATGCTAACCGACGGCAGCAGCTGC 480
consensus_668#1      --------------------------------------------------------CTTN 4
                                                                             **  

consensus_668#0      TGCGGCGGCGGCGGCGCCATGCCGAGGAGAGCGTCATCCGCCATGAACGGGTAGAAGAGA 540
consensus_668#1      TTCCGCGGCGGCGGCNCCATTCCGAGAAGGCNTTATTCCCCCATGACCGGTTAGAAAAGA 64
                     * * *********** **** ***** **    *  *** ****** *** ***** ***

consensus_668#0      GGATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGA 600
consensus_668#1      G-ATTCATGGAGGTCAGGTTCGCAGCCTGATCGCGCATCGTGTTCGTCATCTGGTCGCGA 123
                     * **********************************************************

consensus_668#0      TCCATTGCAAGCTTCTGAATAATCTCGCGTGATCTTTATTAGGAAAAGAGATGGCGCCTC 660
consensus_668#1      TCCATTGCAAGCTTCTGAATANTCTCGCGTGATCTTTATTAGGAAAAGAGNTGGCGCCTC 183
                     ********************* **************************** *********

consensus_668#0      TGAAATCTG--CAGAGGAAG-AGGAATCAAGATCGTTAGCCAGTT-CAAAGATTGTTCTT 716
consensus_668#1      TGAAATCCAATCAAATCAAGCAGGGGAAATNACTCCCAGCTCGTCGCCATGGACGCCTAG 243
                     *******    ** *  *** ***    *  *     ***  **  * * *   *     

consensus_668#0      GTTTTTTTTCCCCCAAGAAACTATTTGATGTTATTTTTGAGTTGGTTGAAAAGTC---AA 773
consensus_668#1      CCGTGTCTCCACACCAAGNACAGCAGNACAGGAGAGNAGAGGCGAGCGAGAAAGCTAGAG 303
                        * * * * * * *   **      *    *     ***  *   ** **  *   * 

consensus_668#0      GAAACTG--GGAACTAATTAGTA----GTAGTAATCTACTAGATTAT------------- 814
consensus_668#1      GAGATCGAAGGAAGCATCCGGGAAGCTGGGGGAGCTAGCTAAGGCGTGAGCTGTAGGTCA 363
                     ** *  *  ****  *    * *    *  * *     ***     *             

consensus_668#0      ------------------------------------------------------------
consensus_668#1      AATTAATTTGGGGGTGGGATGGGCTCCCGATTCCAAGATCAGGATCGAGAGAGGAGGGGG 423
                                                                                 

consensus_668#0      ------------------
consensus_668#1      ACGGATCGGTCGTCGATT 441