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Oryza sativa
cluster # 6680 cluster # 6680       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6680#0 length = 1823 sequences # 4  

consensusID : consensus_6680#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1823
fasta sequence
                              [CGATCC---CCACCACCACCAGCAGCGGCAGCCTCGGCCGGCGCGGCGCGGCGAGGTGGGGAAGCGAGGAAGAGTGGGAGGGCTCTCGCCATGGCGTCGAAGCAGATGGAGGAGATCCAGCGGAAGCTGGCGGTGCTGGCCTACCCGCGGGCCAACGCCCCCGCCCAGTCCCTCCTCTTCGCCGGCGTCGAGCGCTACCGCCTCCTCGAGTGGCTCTTCTTCCGGCTCCTAGGCGACAGATCGCCGTTCACGCAGCAGAACTGGCAGGGGGATAGCCTCGACCGCGACGAGGAGAACAGCAGGATCCAACACCTGGCCGAGATTGCGAATTTCCTTGGTATAACGCCTTCGGTTGACACGGAGGCAATTCAGGGTAGAGGTAGCTACGATGAGCGTGTAGAGCTTCTCTGTCTCATTGTTGATCTAGTTGAAGCTAGCTGCTATGCTGACAATCCAGAGTGGAGTGTTGATGAGCAGCTGGCAAAAGATGTGCTGCTCGTAGATTCAATTGCAGAGAAACAAGCCCAAATATTTTCTGAAGAGTGCAAACTATTTCCTGCAGATGTTCAGATACAATCAATTTACCCCTTGCCTGATATAACAGAACTGGAGTTGAAGCTCTCCGAGTATACTAAAAAGATGTCAAATTTGCAACTGATGGTTCAGGAGTTAGCATCTAAGTATGACTATAATCCGAATGAAGACTATGCCGAGACAGAGTTAAAACTGAGGGAACATTTGCAATCGTTCCTAGAAACAGTAAAATCCTTCAATATGATCTACACTAAGGAAATTCATCCTTGGACACATATGATGGAGGTCCCTCAATTGCATGGTTTTGGTCCAGCTGCTAATCGCTTGTTGGAGGCATATAACACACTTTTGAAGTTCCTTAGTAATTTGAGGAGCCTACGGGATTCGTATGCAGCAATGGCTGCAGGATCGCTTTCAGCATCTAATGAGCCTTCATCTGTCACCAAAATTATCTCCGACTGTGAATCTGCACTTACATTCTTAAATAACAGCCTTTCCATCCTTTCAACTTCTGTGGCACGGGAGCAGGGTGAGACTCTGAATTCACAGTAGCCTGATATCAGGATACTTGAATAACCTTGTAGCAAGTCGATCATTTGCTTTTTGTGGCTTGTAGTATTGCCGTTGTGCCAATTGTCGTTGTGTTCTTGTGTCTGTAGTTCGTAACTGCATAGATGAAAACTTTAACATTAGCTTATATTGAAATATCATGCCGAGAGCTCTCTTTCAAGGCTGTGTACGGCTGCACGTTGCAGCGGCTGCAACGCTGTACAAAATAATGTGCGAGGCGGCCGCAGCCGCAGTAGTGCAGCCGTAACAGGCCCCAAGTTTGTGCAGTACTTGTATGTTTTTTCTTTTTTCTTTTTTTCCCCCTTTGATTCTTTAGACAGTAGTAAATTTCGCTAAGCAAATGTACCTTTTTTCCCCCTGAAAACGGTTCTAAATTTGACACATCAATGATGAATTGAATCAAGTCACAGCCTGCACGTTGAGCCTCTTCCCGGCGCTTCGTTTTCCGGATGCTGCTGCCTGTACAGATCTTCAAAACTTGACACCATGGTTCTGAATCTTCTGATAAACGAAGGGAAAAGCCTGCATTTCTACAGAGCCACAGCGATGCACGCACTTGTGTCTGTGTACGTATAATCAGGCTTGACATATTTGCTTTCAAGAGTTCAAGACCAAGCATTTCCCAGTCCGATCGCAGCCACACGACGTTTCAGTTTTGGACGTCACAACGCCGCCGGCGTACGATTGTACGAGCTGAGGGCGATGGACTACCCACCACCTAC]

[+] EMBL AK070435             [CGATCCCCACCACCACCACCAGCAGCGGCAGCCTCGGCCGGCGCGGCGCGGCGAGGTGGGGAAGCGAGGAAGAGTGGGAGGGCTCTCGCCATGGCGTCGAAGCAGATGGAGGAGATCCAGCGGAAGCTGGCGGTGCTGGCCTACCCGCGGGCCAACGCCCCCGCCCAGTCCCTCCTCTTCGCCGGCGTCGAGCGCTACCGCCTCCTCGAGTGGCTCTTCTTCCGGCTCCTAGGCGACAGATCGCCGTTCACGCAGCAGAACTGGCAGGGGGATAGCCTCGACCGCGACGAGGAGAACAGCAGGATCCAACACCTGGCCGAGATTGCGAATTTCCTTGGTATAACGCCTTCGGTTGACACGGAGGCAATTCAGGGTAGAGGTAGCTACGATGAGCGTGTAGAGCTTCTCTGTCTCATTGTTGATCTAGTTGAAGCTAGCTGCTATGCTGACAATCCAGAGTGGAGTGTTGATGAGCAGCTGGCAAAAGATGTGCTGCTCGTAGATTCAATTGCAGAGAAACAAGCCCAAATATTTTCTGAAGAGTGCAAACTATTTCCTGCAGATGTTCAGATACAATCAATTTACCCCTTGCCTGATATAACAGAACTGGAGTTGAAGCTCTCCGAGTATACTAAAAAGATGTCAAATTTGCAACTGATGGTTCAGGAGTTAGCATCTAAGTATGACTATAATCCGAATGAAGACTATGCCGAGACAGAGTTAAAACTGAGGGAACATTTGCAATCGTTCCTAGAAACAGTAAAATCCTTCAATATGATCTACACTAAGGAAATTCATCCTTGGACACATATGATGGAGGTCCCTCAATTGCATGGTTTTGGTCCAGCTGCTAATCGCTTGTTGGAGGCATATAACACACTTTTGAAGTTCCTTAGTAATTTGAGGAGCCTACGGGATTCGTATGCAGCAATGGCTGCAGGATCGCTTTCAGCATCTAATGAGCCTTCATCTGTCACCAAAATTATCTCCGACTGTGAATCTGCACTTACATTCTTAAATAACAGCCTTTCCATCCTTTCAACTTCTGTGGCACGGGAGCAGGGTGAGACTCTGAATTCACAGTAGCCTGATATCAGGATACTTGAATAACCTTGTAGCAAGTCGATCATTTGCTTTTTGTGGCTTGTAGTATTGCCGTTGTGCCAATTGTCGTTGTGTTCTTGTGTCTGTAGTTCGTAACTGCATAGATGAAAACTTTAACATTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK106718             [ GATCC   CCACCACCACCAGCAGCGGCAGCCTCGGCCGGCGCGGCGCGGCGAGGTGGGGAAGCGAGGAAGAGTGGGAGGGCTCTCGCCATGGCGTCGAAGCAGATGGAGGAGATCCAGCGGAAGCTGGCGGTGCTGGCCTACCCGCGGGCCAACGCCCCCGCCCAGTCCCTCCTCTTCGCCGGCGTCGAGCGCTACCGCCTCCTCGAGTGGCTCTTCTTCCGGCTCCTAGGCGACAGATCGCCGTTCACGCAGCAGAACTGGCAGGGGGATAGCCTCGACCGCGACGAGGAGAACAGCAGGATCCAACACCTGGCCGAGATTGCGAATTTCCTTGGTATAACGCCTTCGGTTGACACGGAGGCAATTCAGGGTAGAGGTAGCTACGATGAGCGTGTAGAGCTTCTCTGTCTCATTGTTGATCTAGTTGAAGCTAGCTGCTATGCTGACAATCCAGAGTGGAGTGTTGATGAGCAGCTGGCAAAAGATGTGCTGCTCGTAGATTCAATTGCAGAGAAACAAGCCCAAATATTTTCTGAAGAGTGCAAACTATTTCCTGCAGATGTTCAGATACAATCAATTTACCCCTTGCCTGATATAACAGAACTGGAGTTGAAGCTCTCCGAGTATACTAAAAAGATGTCAAATTTGCAACTGATGGTTCAGGAGTTAGCATCTAAGTATGACTATAATCCGAATGAAGACTATGCCGAGACAGAGTTAAAACTGAGGGAACATTTGCAATCGTTCCTAGAAACAGTAAAATCCTTCAATATGATCTACACTAAGGAAATTCATCCTTGGACACATATGATGGAGGTCCCTCAATTGCATGGTTTTGGTCCAGCTGCTAATCGCTTGTTGGAGGCATATAACACACTTTTGAAGTTCCTTAGTAATTTGAGGAGCCTACGGGATTCGTATGCAGCAATGGCTGCAGGATCGCTTTCAGCATCTAATGAGCCTTCATCTGTCACCAAAATTATCTCCGACTGTGAATCTGCACTTACATTCTTAAATAACAGCCTTTCCATCCTTTCAACTTCTGTGGCACGGGAGCAGGGTGAGACTCTGAATTCACAGTAGCCTGATATCAGGATACTTGAATAACCTTGTAGCAAGTCGATCATTTGCTTTTTGTGGCTTGTAGTATTGCCGTTGTGCCAATTGTCGTTGTGTTCTTGTGTCTGTAGTTCGTAACTGCATAGATGAAAACTTTAACATTAGCTTATATTGAAATATCATGCCGAGAGCTCTCTTTCAAGGCTGTGTACGGCTGCACGTTGCAGCGGCTGCAACGCTGTACAAAATAATGTGCGAGGCGGCCGCAGCCGCAGTAGTGCAGCCGTAACAGGCCCCAAGTTTGTGCAGTACTTGTATGTTTTTTCTTTTTTCTTTTTTTCCCCCTTTGATTCTTTAGACAGTAGTAAATTTCGCTAAGCAAATGTACCTTTTTTCCCCCTGAAAACGGTTCTAAATTTGACACATCAATGATGAATTGAATCAAGTCACAGCCTGCACGTTGAGCCTCTTCCCGGCGCTTCGTTTTCCGGATGCTGCTGCCTGTACAGATCTTCAAAACTTGACACCATGGTTCTGAATCTTCTGATAAACGAAGGGAAAAGCCTGCATTTCTACAGAGCCACAGCGATGCACGCACTTGTGTCTGTGTACGTATAATCAGGCTTGACATATTTGCTTTCAAGAGTTCAAGACCAAGCATTTCCCAGTCCGATCGCAGCCACACGACGTTTCAGTTTTGGACGTCACAACGCCGCCGGCGTACGATTGTACGAGCTGAGGGCGATGGACTACCCACCACCTAC]
[+] EMBL CB683665             [     a   CCACCTCCACCAGCAGCGGCAGCCTCGGCCGGCGCGGCGCGGCGAGGTGGGGAAGCGAGGAAGAGTGGGAGGGCTCTCGCCATGGCGTCTAAGCAGATGGAGGAGATCCAGCGGAAGCTGGCGGTGCTGGCCTACCCGCGGGCCAACGCCCCCGCCCAGTCCCTCCTCTTCGCCGGCGTCGAGCGCTACCGCCTCCTCGAGTGGCTCTTCTTCCGGCTCCTAGGCGACAGATCGCCGTTCACGCAGCAGAACTGGCAGGGGGATAGCCTCGACCGCGACGAGGAGAACAGCAGGATCCAACACCTGGCCGAGATTGCGAATTTCCTTGGTATAACGCCTTCGGTTGACACGGAGGCAATTCAGGGTAGAGGTAGCTACGATGAGCGTGTAGAGCTTCTCTGTCTCATTGTTGATCTAGTTGAAGCTAGCTGCTATGCTGACAATCCAGAGTGGAGTGTTGATGAGCAGCTGGCAAAAGATGTGCTGCTCGTAGATTCAATTGCAGAGAAACAAGCCCAAATATTTTCTGAAGAGTGCAAACTATTTCCTGCAGATGTTCAGATACAATCAATTTACCCCTTGCCTGATATAACAGAACTGGAGTTGAAGCTCTCCGAGTATACTAAAAAGATGTCAAATTTGCAACTGATGGTTCAAGAGTTAGCATCTAAGTATGACTATAATCCGAATGAAGACTATGCCGAGACAGAGTTAAAACTGAGGGAACATTTGCAATCGTTCCTAGAAACAGTAAAATCCTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB683204             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGTGTTGATGAGCAGCTGGCAAAAGATGTGCTGCTCGTAGATTCAATTGCAGAGAAACAAGCCCAAATATTTTCTGAAGAGTGCAAACTATTTCCTGCAGATGTTCAGATACAATCAATTTACCCCTTGCCTGATATAACAGAACTGGAGTTGAAGCTCTCCGAGTATACTAAAAAGATGTCAAATTTGCAACTGATGGTTCAGGAGTTAGCATCTAAGTATGACTATAATCCGAATGAAGACTATGCCGAGACAGAGTTAAAACTGAGGGAACATTTGCAATCGTTCCTAGAAACAGTAAAATCCTTCAATATGATCTACACTAAGGAAATTCATCCTTGGACACATATGATGGAGGTCCCTCAATTGCATGGTTTTGGTCCAGCTGCTAATCGCTTGTTGGAGGCATATAACACACTTTTGAAGTTCCTTAGTAATTTGAGGAGCCTACGGGATTCGTATGCAGCAATGGCTGCAGGATCGCTTTCAGCATTTAATGAGCCTTCATCTGTCACCAAAATTATCTCCGACTGTGAATCTGCACTTACATTCTTAAATAACAGCCTTTCCATCCTTTCAACTTCTGTGGCACGGGAGCAGGGTGAGACTCTGAATTCACAGTAGCCTGATATCAGGATACTTGAATAACCTTGTAGCAAGTCGATCATTTGCTTTTTGTGGCTTGTAGTATTGCCGTTGTGCCAATTGTCGTTGTGTTCTTGTGTCTGTAGTTCGTAACTGCATAGATGAAAACTTTAACATTAGCTTATA TGAAAaaaaaaaga                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_6680#0 CGATCCCCACCACCACCAGCAGCGGCAGCCTCGGCCGGCGCGGCGCGGCGAGGTGGGGAA GCGAGGAAGAGTGGGAGGGCTCTCGCCATGGCGTCGAAGCAGATGGAGGAGATCCAGCGG AAGCTGGCGGTGCTGGCCTACCCGCGGGCCAACGCCCCCGCCCAGTCCCTCCTCTTCGCC GGCGTCGAGCGCTACCGCCTCCTCGAGTGGCTCTTCTTCCGGCTCCTAGGCGACAGATCG CCGTTCACGCAGCAGAACTGGCAGGGGGATAGCCTCGACCGCGACGAGGAGAACAGCAGG ATCCAACACCTGGCCGAGATTGCGAATTTCCTTGGTATAACGCCTTCGGTTGACACGGAG GCAATTCAGGGTAGAGGTAGCTACGATGAGCGTGTAGAGCTTCTCTGTCTCATTGTTGAT CTAGTTGAAGCTAGCTGCTATGCTGACAATCCAGAGTGGAGTGTTGATGAGCAGCTGGCA AAAGATGTGCTGCTCGTAGATTCAATTGCAGAGAAACAAGCCCAAATATTTTCTGAAGAG TGCAAACTATTTCCTGCAGATGTTCAGATACAATCAATTTACCCCTTGCCTGATATAACA GAACTGGAGTTGAAGCTCTCCGAGTATACTAAAAAGATGTCAAATTTGCAACTGATGGTT CAGGAGTTAGCATCTAAGTATGACTATAATCCGAATGAAGACTATGCCGAGACAGAGTTA AAACTGAGGGAACATTTGCAATCGTTCCTAGAAACAGTAAAATCCTTCAATATGATCTAC ACTAAGGAAATTCATCCTTGGACACATATGATGGAGGTCCCTCAATTGCATGGTTTTGGT CCAGCTGCTAATCGCTTGTTGGAGGCATATAACACACTTTTGAAGTTCCTTAGTAATTTG AGGAGCCTACGGGATTCGTATGCAGCAATGGCTGCAGGATCGCTTTCAGCATCTAATGAG CCTTCATCTGTCACCAAAATTATCTCCGACTGTGAATCTGCACTTACATTCTTAAATAAC AGCCTTTCCATCCTTTCAACTTCTGTGGCACGGGAGCAGGGTGAGACTCTGAATTCACAG TAGCCTGATATCAGGATACTTGAATAACCTTGTAGCAAGTCGATCATTTGCTTTTTGTGG CTTGTAGTATTGCCGTTGTGCCAATTGTCGTTGTGTTCTTGTGTCTGTAGTTCGTAACTG CATAGATGAAAACTTTAACATTAGCTTATATTGAAATATCATGCCGAGAGCTCTCTTTCA AGGCTGTGTACGGCTGCACGTTGCAGCGGCTGCAACGCTGTACAAAATAATGTGCGAGGC GGCCGCAGCCGCAGTAGTGCAGCCGTAACAGGCCCCAAGTTTGTGCAGTACTTGTATGTT TTTTCTTTTTTCTTTTTTTCCCCCTTTGATTCTTTAGACAGTAGTAAATTTCGCTAAGCA AATGTACCTTTTTTCCCCCTGAAAACGGTTCTAAATTTGACACATCAATGATGAATTGAA TCAAGTCACAGCCTGCACGTTGAGCCTCTTCCCGGCGCTTCGTTTTCCGGATGCTGCTGC CTGTACAGATCTTCAAAACTTGACACCATGGTTCTGAATCTTCTGATAAACGAAGGGAAA AGCCTGCATTTCTACAGAGCCACAGCGATGCACGCACTTGTGTCTGTGTACGTATAATCA GGCTTGACATATTTGCTTTCAAGAGTTCAAGACCAAGCATTTCCCAGTCCGATCGCAGCC ACACGACGTTTCAGTTTTGGACGTCACAACGCCGCCGGCGTACGATTGTACGAGCTGAGG GCGATGGACTACCCACCACCTAC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)