These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 831 fasta sequence [ACTTACCGCCGCCTCCTCCGCCCAAGCGAGGCCGCGGCCGTCCCCCGAAGGTGCGCCCCCGGGCTACCCGGCCGTACCCGCCGCGCCGCACCCGTCCCCGTCCCCGTCGGTGCGCCGGTCGACGGCTCCGTCGCTGCCGCCGCCCCCGCCGTGCCGCGCCGCGTGGCCGCCCGCCCAAGCCGCGGGACCCGCACGCGCCGCCCAAGATCCCACGCCCGCGAGGGCGCCCGCGCAAGAA-CCCTCTCCCGGAAGGGATGGTGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGCGCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGAC-GACGCCCAAGCCCAAGGCCGAAAGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCT-GCTGCTGTTGTTTCATGTGGAGTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGATGACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAGTTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTATCCTGTATCTGTTGTCACGCACG-CCAAGAAATTGCAATGCAATTTTTAGTTGATCGTTTTGATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAACTGCAAAGGACTCACTGCTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL OSRNAATH2 [ACTTACCGCCGCCTCCTCCGCCCAAGCGAGGCCGCGGCCGTCCCCCGAAGGTGCGCCCCCGGGCTACCCGGCCGTACCCGCCGCGCCGCACCCGTCCCCGTCCCCGTCGGTGCGCCGGTCGACGGCTCCGTCGCTGCCGCCGCCCCCGCCGTGCCGCGCCGCGTGGCCGCCCGCCCAAGCCGCGGGACCCGCACGCGCCGCCCAAGATCCCACGCCCGCGAGGGCGCCCGCGCAAGAA CCCTCTCCCGGAAGGGATGGTGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGCGCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGAC GACGCCCAAGCCCAAGGCCGAAAGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCT GCTGCTGTTGTTTCATGTGGAGTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGATGACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAGTTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTATCCTGTATCTGTTGTCACGCACG CCATGAAATTGCAATGCAATTTTTAGTTGATCGTTTTGATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAACTGCAAAGGACTCACTGCTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CB680742 [ GCAAAAATCCCTCTCCCGGAAGGGATGGGGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGCGCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGAG GACGCCCAAGCCCAAGGCCGAAAGAGGAATCGCTAACATTTCTCTCAAGTTTCCTGCTGCT GCTGCTGTTGTTTCATGTGGAGTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGATGACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAGTTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTATCCTGTATCTGTTGTCACGCACG CCCAGAAATTGCAATGCAATTTTTAGTTGATCGTTTTGATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTGCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTAAACATTGTAGTGGTTtaa ] [+] EMBL BM419666 [ TTCGTGTGAGACGACAGACGCCCAAGCCCAAGGCCGAAAGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCTCGCTGCTGTTGTTTCATGTGGAGTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGATGACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAGTTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTATCCTGTATCTGTTGTCACGCACGCCCAAGAAATTGCAATGCAATTTTTAGTTGATCGTTTTGATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAACTGCAAAGGACTCACTGC TAAAAAAAAAA ] consensusID : consensus_6684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 287 fasta sequence [TGGGTGTGGTGTNTTCAAGTGTCAGTGGTGTTGGCATGGCTGACCCTGTTTGTCNGCCGGAGCAAGCCTTTGCTTCACCAGGTGGGTGTATCCTGTATCTGTTGTCACGCACGCCCAGAAATTGCAAATGGCAATTTGTTAGTTGATCGTTTTGATTGCGGGGGAGATACTGGTCCGGGTTTGTGCTTCTTGGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAAAAAAAAAA] [+] EMBL BQ907693 [TGGGTGTGGTGTNTTCAAGTGTCAGTGGTGTTGGCATGGCTGACCCTGTTTGTCNGCCGGAGCAAGCCTTTGCTTCACCAGGTGGGTGTATCCTGTATCTGTTGTCACGCACGCCCAGAAATTGCAAATGGCAATTTGTTAGTTGATCGTTTTGATTGCGGGGGAGATACTGGTCCGGGTTTGTGCTTCTTGGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6684#0 ACTTACCGCCGCCTCCTCCGCCCAAGCGAGGCCGCGGCCGTCCCCCGAAGGTGCGCCCCC 60 consensus_6684#1 ------------------------------------------------------------ consensus_6684#0 GGGCTACCCGGCCGTACCCGCCGCGCCGCACCCGTCCCCGTCCCCGTCGGTGCGCCGGTC 120 consensus_6684#1 ------------------------------------------------------------ consensus_6684#0 GACGGCTCCGTCGCTGCCGCCGCCCCCGCCGTGCCGCGCCGCGTGGCCGCCCGCCCAAGC 180 consensus_6684#1 ------------------------------------------------------------ consensus_6684#0 CGCGGGACCCGCACGCGCCGCCCAAGATCCCACGCCCGCGAGGGCGCCCGCGCAAGAACC 240 consensus_6684#1 ------------------------------------------------------------ consensus_6684#0 CTCTCCCGGAAGGGATGGTGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGC 300 consensus_6684#1 ------------------------------------------------------------ consensus_6684#0 GCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGACGACGCCCAAGCCCAAGGCCGAA 360 consensus_6684#1 ------------------------------------------------------------ consensus_6684#0 AGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCTGCTGCTGTTGTTTCATGTGGA 420 consensus_6684#1 ------------------------------------------------------------ consensus_6684#0 GTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGAT 480 consensus_6684#1 ------------------------------------------------------------ consensus_6684#0 GACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCA- 539 consensus_6684#1 ----------------------------------------TGGGTGTGGTGTNTTCAAGT 20 ** ******* ** consensus_6684#0 GTTCGTGGTGTTGCT---GCT-ACCCT-TTTGTCG-CCGGAGCA-GCCTTTGCTTCCC-- 590 consensus_6684#1 GTCAGTGGTGTTGGCATGGCTGACCCTGTTTGTCNGCCGGAGCAAGCCTTTGCTTCACCA 80 ** ********* *** ***** ****** ******** *********** * consensus_6684#0 GGTGG-TGTATCCTGTATCTGTTGTCACGCACGCCAAGAAATTGCAAT--GCAATTT-TT 646 consensus_6684#1 GGTGGGTGTATCCTGTATCTGTTGTCACGCACGCCCAGAAATTGCAAATGGCAATTTGTT 140 ***** ***************************** *********** ******* ** consensus_6684#0 AGTTGATCGTTTTGATT-CGGGGGAGATACTG-TCCGGGTTTGTGCTTCTTG-TTTCAGT 703 consensus_6684#1 AGTTGATCGTTTTGATTGCGGGGGAGATACTGGTCCGGGTTTGTGCTTCTTGGTTTCAGT 200 ***************** ************** ******************* ******* consensus_6684#0 GTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGT 763 consensus_6684#1 GTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGT 260 ************************************************************ consensus_6684#0 GGTTGATTTCAAGCAAGAACTGCAAAGGACTCACTGCTTCCCTGTTAAAAAAAAAAAAAA 823 consensus_6684#1 GGTTGATTTCAAGCAAGAAAAAAAAAA--------------------------------- 287 ******************* *** consensus_6684#0 AAAAAAAA 831 consensus_6684#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||