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Oryza sativa
cluster # 6684 cluster # 6684       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6684#0 length = 831 sequences # 3  
consensus_6684#1 length = 287 sequences # 1  

consensusID : consensus_6684#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 831
fasta sequence
                              [ACTTACCGCCGCCTCCTCCGCCCAAGCGAGGCCGCGGCCGTCCCCCGAAGGTGCGCCCCCGGGCTACCCGGCCGTACCCGCCGCGCCGCACCCGTCCCCGTCCCCGTCGGTGCGCCGGTCGACGGCTCCGTCGCTGCCGCCGCCCCCGCCGTGCCGCGCCGCGTGGCCGCCCGCCCAAGCCGCGGGACCCGCACGCGCCGCCCAAGATCCCACGCCCGCGAGGGCGCCCGCGCAAGAA-CCCTCTCCCGGAAGGGATGGTGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGCGCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGAC-GACGCCCAAGCCCAAGGCCGAAAGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCT-GCTGCTGTTGTTTCATGTGGAGTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGATGACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAGTTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTATCCTGTATCTGTTGTCACGCACG-CCAAGAAATTGCAATGCAATTTTTAGTTGATCGTTTTGATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAACTGCAAAGGACTCACTGCTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSRNAATH2            [ACTTACCGCCGCCTCCTCCGCCCAAGCGAGGCCGCGGCCGTCCCCCGAAGGTGCGCCCCCGGGCTACCCGGCCGTACCCGCCGCGCCGCACCCGTCCCCGTCCCCGTCGGTGCGCCGGTCGACGGCTCCGTCGCTGCCGCCGCCCCCGCCGTGCCGCGCCGCGTGGCCGCCCGCCCAAGCCGCGGGACCCGCACGCGCCGCCCAAGATCCCACGCCCGCGAGGGCGCCCGCGCAAGAA CCCTCTCCCGGAAGGGATGGTGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGCGCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGAC GACGCCCAAGCCCAAGGCCGAAAGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCT GCTGCTGTTGTTTCATGTGGAGTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGATGACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAGTTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTATCCTGTATCTGTTGTCACGCACG CCATGAAATTGCAATGCAATTTTTAGTTGATCGTTTTGATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAACTGCAAAGGACTCACTGCTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CB680742             [                                                                                                                                                                                                                                       GCAAAAATCCCTCTCCCGGAAGGGATGGGGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGCGCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGAG GACGCCCAAGCCCAAGGCCGAAAGAGGAATCGCTAACATTTCTCTCAAGTTTCCTGCTGCT GCTGCTGTTGTTTCATGTGGAGTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGATGACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAGTTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTATCCTGTATCTGTTGTCACGCACG CCCAGAAATTGCAATGCAATTTTTAGTTGATCGTTTTGATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTGCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTAAACATTGTAGTGGTTtaa                                                             ]
[+] EMBL BM419666             [                                                                                                                                                                                                                                                                                                                                    TTCGTGTGAGACGACAGACGCCCAAGCCCAAGGCCGAAAGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCTCGCTGCTGTTGTTTCATGTGGAGTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGATGACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAGTTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTATCCTGTATCTGTTGTCACGCACGCCCAAGAAATTGCAATGCAATTTTTAGTTGATCGTTTTGATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAACTGCAAAGGACTCACTGC        TAAAAAAAAAA            ]


>consensus_6684#0 ACTTACCGCCGCCTCCTCCGCCCAAGCGAGGCCGCGGCCGTCCCCCGAAGGTGCGCCCCC GGGCTACCCGGCCGTACCCGCCGCGCCGCACCCGTCCCCGTCCCCGTCGGTGCGCCGGTC GACGGCTCCGTCGCTGCCGCCGCCCCCGCCGTGCCGCGCCGCGTGGCCGCCCGCCCAAGC CGCGGGACCCGCACGCGCCGCCCAAGATCCCACGCCCGCGAGGGCGCCCGCGCAAGAACC CTCTCCCGGAAGGGATGGTGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGC GCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGACGACGCCCAAGCCCAAGGCCGAA AGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCTGCTGCTGTTGTTTCATGTGGA GTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGAT GACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCAG TTCGTGGTGTTGCTGCTACCCTTTTGTCGCCGGAGCAGCCTTTGCTTCCCGGTGGTGTAT CCTGTATCTGTTGTCACGCACGCCAAGAAATTGCAATGCAATTTTTAGTTGATCGTTTTG ATTCGGGGGAGATACTGTCCGGGTTTGTGCTTCTTGTTTCAGTGTATGACTGTATTGATC ATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAG AACTGCAAAGGACTCACTGCTTCCCTGTTAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_6684#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence
                              [TGGGTGTGGTGTNTTCAAGTGTCAGTGGTGTTGGCATGGCTGACCCTGTTTGTCNGCCGGAGCAAGCCTTTGCTTCACCAGGTGGGTGTATCCTGTATCTGTTGTCACGCACGCCCAGAAATTGCAAATGGCAATTTGTTAGTTGATCGTTTTGATTGCGGGGGAGATACTGGTCCGGGTTTGTGCTTCTTGGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAAAAAAAAAA]

[+] EMBL BQ907693             [TGGGTGTGGTGTNTTCAAGTGTCAGTGGTGTTGGCATGGCTGACCCTGTTTGTCNGCCGGAGCAAGCCTTTGCTTCACCAGGTGGGTGTATCCTGTATCTGTTGTCACGCACGCCCAGAAATTGCAAATGGCAATTTGTTAGTTGATCGTTTTGATTGCGGGGGAGATACTGGTCCGGGTTTGTGCTTCTTGGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAAAAAAAAAA]


>consensus_6684#1 TGGGTGTGGTGTNTTCAAGTGTCAGTGGTGTTGGCATGGCTGACCCTGTTTGTCNGCCGG AGCAAGCCTTTGCTTCACCAGGTGGGTGTATCCTGTATCTGTTGTCACGCACGCCCAGAA ATTGCAAATGGCAATTTGTTAGTTGATCGTTTTGATTGCGGGGGAGATACTGGTCCGGGT TTGTGCTTCTTGGTTTCAGTGTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCT AGATCTTTTGACATTGTAGTGGTTGATTTCAAGCAAGAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6684#0      ACTTACCGCCGCCTCCTCCGCCCAAGCGAGGCCGCGGCCGTCCCCCGAAGGTGCGCCCCC 60
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      GGGCTACCCGGCCGTACCCGCCGCGCCGCACCCGTCCCCGTCCCCGTCGGTGCGCCGGTC 120
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      GACGGCTCCGTCGCTGCCGCCGCCCCCGCCGTGCCGCGCCGCGTGGCCGCCCGCCCAAGC 180
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      CGCGGGACCCGCACGCGCCGCCCAAGATCCCACGCCCGCGAGGGCGCCCGCGCAAGAACC 240
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      CTCTCCCGGAAGGGATGGTGCCGCCGCCGCCGACGCGCCCCGGCGCGACGGCCAAGCCGC 300
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      GCCCGCAGTTCGCCGAGGTCGGCTTCGTGTGAGACGACGACGCCCAAGCCCAAGGCCGAA 360
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      AGAGGAATCGCTAACATTTCACTCAAGTTTCCTGCTGCTGCTGCTGTTGTTTCATGTGGA 420
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      GTTCTTTCTCCGTTCGTGTTGTTCTAATTCAGGGAGGAGCGTGTGTAGGTGCTGGACGAT 480
consensus_6684#1      ------------------------------------------------------------
                                                                                  

consensus_6684#0      GACGATGACGGCGACGACGACGGCGATTGCCGGTTGCCGCCGGAGGTGGTGTGTTTTCA- 539
consensus_6684#1      ----------------------------------------TGGGTGTGGTGTNTTCAAGT 20
                                                               **  ******* **     

consensus_6684#0      GTTCGTGGTGTTGCT---GCT-ACCCT-TTTGTCG-CCGGAGCA-GCCTTTGCTTCCC-- 590
consensus_6684#1      GTCAGTGGTGTTGGCATGGCTGACCCTGTTTGTCNGCCGGAGCAAGCCTTTGCTTCACCA 80
                      **  *********     *** ***** ******  ******** *********** *  

consensus_6684#0      GGTGG-TGTATCCTGTATCTGTTGTCACGCACGCCAAGAAATTGCAAT--GCAATTT-TT 646
consensus_6684#1      GGTGGGTGTATCCTGTATCTGTTGTCACGCACGCCCAGAAATTGCAAATGGCAATTTGTT 140
                      ***** ***************************** ***********   ******* **

consensus_6684#0      AGTTGATCGTTTTGATT-CGGGGGAGATACTG-TCCGGGTTTGTGCTTCTTG-TTTCAGT 703
consensus_6684#1      AGTTGATCGTTTTGATTGCGGGGGAGATACTGGTCCGGGTTTGTGCTTCTTGGTTTCAGT 200
                      ***************** ************** ******************* *******

consensus_6684#0      GTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGT 763
consensus_6684#1      GTATGACTGTATTGATCATTGATCATTTTAGCTTCTGCCTAGATCTTTTGACATTGTAGT 260
                      ************************************************************

consensus_6684#0      GGTTGATTTCAAGCAAGAACTGCAAAGGACTCACTGCTTCCCTGTTAAAAAAAAAAAAAA 823
consensus_6684#1      GGTTGATTTCAAGCAAGAAAAAAAAAA--------------------------------- 287
                      *******************    ***                                  

consensus_6684#0      AAAAAAAA 831
consensus_6684#1      --------
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)