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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2269 fasta sequence
[TCGCCTCTGCTCCGCTTCGCCTTTGCTCCGACCCGGTCGGCCTCGCCGCCGTCGCCGCCGCCACCGCATCACGCGCGCGCGCGCGCGACGGCGCGAGCGCACGGGTGAGGTGAGAGAGGGGTAGTAGAGCAGCAGCCGCCCCCGACCGCCCACGCCCGGGCCGGGTGGTGGAGCACACCGTGGCATGATTGGGTCCATGGCCTCCTGACCCCGCCTCCCTCTCCTCCTCCTCTGCTCCCCTTTTGCTGCTGTTGCTGCTTCCTACTCTCACTCTGCTTCTGCTGCTCAATCCACCTGCTCCTCTCCTTCTCTTCTCTCTCCCGAGCGGCCGAGAAGAGGCGAGGGGAGAAGGGAGGACTTGATTCTTGCTTGTTGTTGATCCATTCTTTCTTGCTCTGCTCTGCTCTTGTGTGGTGTGTGTGTCCAGGCTTGCCGCATTAAAGGAGAGGTGGTTTTTGTTGACCCTGTTTAGCAGCAGCAGCAGCAGCAGCGACCAAGATCCGTCTCGTCGGGGAAGATGAGGAGATCTGCATCTCTACTCCGAGTCCTTTTGGTTTTCATAACCATGGTTGGGACTCAATGGTCCAATGTATCCAGTACATACTGCAAGGACATGGCATCAAGCGTATATCGACCCCACAGTGTCACAATAACTGAATTTGGTGCTGTTGGGGATGGTGTGACTCTCAATACCAAAGCATTCCAGAACGCAATCTTCTACCTCAATTCATTTGCAGACAAGGGTGGCGCACAGCTCTTCGTGCCTGCGGGAAGGTGGCTGACAGGGAGTTTTAGTCTTATCAGCCATCTCACTTTGTCACTGGATAAGGATGCAGAAATAATTGGATCTCCGGATTCATCCGATTGGCCAGTCATTGATCCTCTTCCATCCTATGGGCGAGGTAGAGAGCTCCCTGGAAAAAGACATCAGAGTCTAATTTTTGGAACTAATCTAACAGATGTAATAATTACTGGCGCTAATGGTACCATTGATGGCCAGGGAGCCATTTGGTGGGATTGGTTCCACAGCAACACACTGAATTATACTAGGCCACATCTTGTTGAGTTGATGTACTCCACCGATGTTGTTATATCCAATTTAACCTTCAAGAACTCACCGTTTTGGAATATCCATCCTGTATACTGCAGCCAAGTGCTTGTCCAGCATGTCACAATCCTAGCGCCCCTGAATTCACCGAACACTGATGGCATTGATCCAGATTCGTCCACAAATGTCTGCATTGATCATTGTTATGTCAGAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGGGATGAGTATGGCATTTCCTTTGCTCGTCCTAGCACAAACATCAGTATCAGCAACATCACAGGAGAGACAAGGGGTGGTGCAGGGATTGCCTTTGGAAGTGAGATGTCAGGTGGCATATCCGAAGTCCGGGCTGAGGGTCTCCGCATCGTCAACTCAATGCACGGGATCAGAATCAAGACCGCTCCAGGGCGTGGAGGGTATGTGAAGAACGTGTACATATCTGATGTGAGCATGGACAATGTTTCGATGGCCATCAGGATCACCGGAAACTTTGGTGAACATCCTGATGACAAATATGATAGAAATGCTCTCCCAATGATAAGCAATATTACAATCGAAAATGTGGTCGGCGTCAATGTTGGTGTCGCTGGCATCTTGGAAGGAATTGAGGGGGACAACTTCAGCAGCATTTGCCTGTCCAATGTTTCCCTCAGTGTACAGTCTATGCATCCCTGGAATTGTTCGCTTATCGAAGGTTATTCAAACTCTGTGATCCCAGAGTCATGTGAGCAACTCAGAACAGATTGTGGACAGACACCAATTTGCTATGATGGTGGAAGTTCTTCAGCAATACATGCACAGGCAGCCAGACATAGATTGTCGAGTGCCAGCAGATTGCTAAATCCTTTACTGAAGTTGGCGATGCTGTAGAGTAGGTAGAGAGATGCTCTATTTATTTGCTGCAGAGGGGCTTTTGCTTCGTGGGATGCGTCATGTACATCTGATTCTTGCGATTG-TTTTTTTTTTATTAGCACGATGTTTGCTTCTTGTATATAGTTGTGGGAGATGAAT-GTTGGTGTACCATGCATGTTTTTGTCACCATCTTTGATTTGTGATGTATCTGTTCCATAGCCTTTTGTTGGGAAGAAAACAGTATGATCCTCCTTCCAATATGTCCAGTTTTGTGGATAGGGTCATCAAAATTGTAACTTGTAAGTTGAGTAGCAACAAGAGAGAAGAGTCAGTAGCGGC]
[+] EMBL AK066209 [TCGCCTCTGCTCCGCTTCGCCTTTGCTCCGACCCGGTCGGCCTCGCCGCCGTCGCCGCCGCCACCGCATCACGCGCGCGCGCGCGCGACGGCGCGAGCGCACGGGTGAGGTGAGAGAGGGGTAGTAGAGCAGCAGCCGCCCCCGACCGCCCACGCCCGGGCCGGGTGGTGGAGCACACCGTGGCATGATTGGGTCCATGGCCTCCTGACCCCGCCTCCCTCTCCTCCTCCTCTGCTCCCCTTTTGCTGCTGTTGCTGCTTCCTACTCTCACTCTGCTTCTGCTGCTCAATCCACCTGCTCCTCTCCTTCTCTTCTCTCTCCCGAGCGGCCGAGAAGAGGCGAGGGGAGAAGGGAGGACTTGATTCTTGCTTGTTGTTGATCCATTCTTTCTTGCTCTGCTCTGCTCTTGTGTGGTGTGTGTGTCCAGGCTTGCCGCATTAAAGGAGAGGTGGTTTTTGTTGACCCTGTTTAGCAGCAGCAGCAGCAGCAGCGACCAAGATCCGTCTCGTCGGGGAAGATGAGGAGATCTGCATCTCTACTCCGAGTCCTTTTGGTTTTCATAACCATGGTTGGGACTCAATGGTCCAATGTATCCAGTACATACTGCAAGGACATGGCATCAAGCGTATATCGACCCCACAGTGTCACAATAACTGAATTTGGTGCTGTTGGGGATGGTGTGACTCTCAATACCAAAGCATTCCAGAACGCAATCTTCTACCTCAATTCATTTGCAGACAAGGGTGGCGCACAGCTCTTCGTGCCTGCGGGAAGGTGGCTGACAGGGAGTTTTAGTCTTATCAGCCATCTCACTTTGTCACTGGATAAGGATGCAGAAATAATTGGATCTCCGGATTCATCCGATTGGCCAGTCATTGATCCTCTTCCATCCTATGGGCGAGGTAGAGAGCTCCCTGGAAAAAGACATCAGAGTCTAATTTTTGGAACTAATCTAACAGATGTAATAATTACTGGCGCTAATGGTACCATTGATGGCCAGGGAGCCATTTGGTGGGATTGGTTCCACAGCAACACACTGAATTATACTAGGCCACATCTTGTTGAGTTGATGTACTCCACCGATGTTGTTATATCCAATTTAACCTTCAAGAACTCACCGTTTTGGAATATCCATCCTGTATACTGCAGCCAAGTGCTTGTCCAGCATGTCACAATCCTAGCGCCCCTGAATTCACCGAACACTGATGGCATTGATCCAGATTCGTCCACAAATGTCTGCATTGATCATTGTTATGTCAGAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGGGATGAGTATGGCATTTCCTTTGCTCGTCCTAGCACAAACATCAGTATCAGCAACATCACAGGAGAGACAAGGGGTGGTGCAGGGATTGCCTTTGGAAGTGAGATGTCAGGTGGCATATCCGAAGTCCGGGCTGAGGGTCTCCGCATCGTCAACTCAATGCACGGGATCAGAATCAAGACCGCTCCAGGGCGTGGAGGGTATGTGAAGAACGTGTACATATCTGATGTGAGCATGGACAATGTTTCGATGGCCATCAGGATCACCGGAAACTTTGGTGAACATCCTGATGACAAATATGATAGAAATGCTCTCCCAATGATAAGCAATATTACAATCGAAAATGTGGTCGGCGTCAATGTTGGTGTCGCTGGCATCTTGGAAGGAATTGAGGGGGACAACTTCAGCAGCATTTGCCTGTCCAATGTTTCCCTCAGTGTACAGTCTATGCATCCCTGGAATTGTTCGCTTATCGAAGGTTATTCAAACTCTGTGATCCCAGAGTCATGTGAGCAACTCAGAACAGATTGTGGACAGACACCAATTTGCTATGATGGTGGAAGTTCTTCAGCAATACATGCACAGGCAGCCAGACATAGATTGTCGAGTGCCAGCAGATTGCTAAATCCTTTACTGAAGTTGGCGATGCTGTAGAGTAGGTAGAGAGATGCTCTATTTATTTGCTGCAGAGGGGCTTTTGCTTCGTGGGATGCGTCATGTACATCTGATTCTTGCGATTG TTTTTTTTTTATTAGCACGATGTTTGCTTCTTGTATATAGTTGTGGGAGATGAAT GTTGGTGTACCATGCATGTTTTTGTCACCATCTTTGATTTGTGATGTATCTGTTCCATAGCCTTTTGTTGGGAAGAAAACAGTATGATCCTCCTTCCAATATGTCCAGTTTTGTGGATAGGGTCATCAAAATTGTAACTTGTAAGTTGAGTAGCAACAAGAGAGAAGAGTC ]
[+] EMBL CA766931 [ gacGAGACAAGGGGTGGTGCAGGGATTGCCTTTGGAAGTGAGATGTCAGGTGGCATATCCGAAGTCCGGGCTGAGGGTCTCCGCATCGTCAACTCAATGCACGGGATCAGAATCAAGACCGCTCCAGGGCGTGGAGGGTATGTGAAGAACGTGTACATATCTGATGTGAGCATGGACAATGTTTCGATGGCCATCAGGATCACCGGAAACTTTGGTGAACATCCTGATGACAAATATGATAGAAATGCTCTCCCAATGATAAGCAATATTACAATCGAAAATGTGGTCGGCGTCAATGTTGGTGTCGCTGGCATCTTGGAAGGAATTGAGGGGGACAACTTCAGCAGCATTTGCCTGTCCAATGTTTCCCTCAGTGTACAGTCTATGCATCCCTGGAATTGTTCGCTTATCGAAGGTTATTCAAACTCTGTGATCCCAGAGTCATGTGAGCAACTCAGAACAGATTGTGGACAGACACCAATTTGCTATGATGGTGGAAGTTCTTCAGCAATACATGCACAGGCAGCCAGACATAGATTGTCGAGTGCCAGCAGATTGCTAAATCCTTTACTGAAGTTGGCGATGCTGTAGAGTAGGTAGAGAGATGCTCTATTTATTTGCTGCAGAGGGGCTTTTGCTTCGTGGGATGCGTCATGTACATCTGATTCTTGCGATTGNTTTTTTTTTTATTAGCATGATGGTTGCTTCTTGNATATAGTTGGGGGAGATGAATGGTTGGTGTACCATGCATGGTTTTG ]
[-] EMBL AU225938 [ ccgctGGGGGACAACTTCAGCAGCATTTGCCTGTCCAATGTTTCCCTCAGTGTACAGTTTATGCATCCCTGGAATTGTTCGCTTATCGAAGGTTATTCAAACTCTGTGATCCCAGAGTCATGTGAGCAACTCAGAACAGATTGTGGACAGACACCAATTTGCTATGATGGTGGAAGTTCTTCAGCGATACATGCACAGGCAGCCAGACATAGATTGTCGAGTGCCAGCAGATTGCTAAATCCTTTACTGAAGTTGGCGATGCTGTAGAGTAGGTAGAGAGATGCTCTATTTATTTGCTGCAGAGGGGCTTTTGCTTCGTGGGATGCGTCATGTACATCTGATTCTTGCGATTG TTTTTTTTTTATTAGCACGATGTTTGCTTCTTGTATATAGTTGTGGGAGATGAAT GTTGGTGTACCATGCATGTTTTTGTCACCATCTTTGATTTGTGATGTATCTGTTCCATAGCCTTTTGTTGGGAAGAAAACAGTATGATCCTCCTTCCAATATGTCCAGTTTTGTGGATAGGGTCATCAAAATTGTAACTTGTAAGTTGAGTAGCAACAAGAGAGAAGAGTCAGTAGCGGC]
consensusID : consensus_6690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 194 fasta sequence
[CAGGANTCGGCACGAGTTGGAATATCCATCCTGTATACTGCAGCCAAGTGCTTGTCCAGCATGTNACAATCCTAGCGCCCCNGAATTCNCGAACACTGATGGNATTGATCCANATTCGTCCACAAATGTCTGCATTGATCATTGTTATGTCAGAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGGGATG]
[+] EMBL AA752749 [CAGGANTCGGCACGAGTTGGAATATCCATCCTGTATACTGCAGCCAAGTGCTTGTCCAGCATGTNACAATCCTAGCGCCCCNGAATTCNCGAACACTGATGGNATTGATCCANATTCGTCCACAAATGTCTGCATTGATCATTGTTATGTCAGAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGGGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6690#0 TCGCCTCTGCTCCGCTTCGCCTTTGCTCCGACCCGGTCGGCCTCGCCGCCGTCGCCGCCG 60
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 CCACCGCATCACGCGCGCGCGCGCGCGACGGCGCGAGCGCACGGGTGAGGTGAGAGAGGG 120
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 GTAGTAGAGCAGCAGCCGCCCCCGACCGCCCACGCCCGGGCCGGGTGGTGGAGCACACCG 180
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 TGGCATGATTGGGTCCATGGCCTCCTGACCCCGCCTCCCTCTCCTCCTCCTCTGCTCCCC 240
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 TTTTGCTGCTGTTGCTGCTTCCTACTCTCACTCTGCTTCTGCTGCTCAATCCACCTGCTC 300
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 CTCTCCTTCTCTTCTCTCTCCCGAGCGGCCGAGAAGAGGCGAGGGGAGAAGGGAGGACTT 360
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 GATTCTTGCTTGTTGTTGATCCATTCTTTCTTGCTCTGCTCTGCTCTTGTGTGGTGTGTG 420
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 TGTCCAGGCTTGCCGCATTAAAGGAGAGGTGGTTTTTGTTGACCCTGTTTAGCAGCAGCA 480
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 GCAGCAGCAGCGACCAAGATCCGTCTCGTCGGGGAAGATGAGGAGATCTGCATCTCTACT 540
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 CCGAGTCCTTTTGGTTTTCATAACCATGGTTGGGACTCAATGGTCCAATGTATCCAGTAC 600
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 ATACTGCAAGGACATGGCATCAAGCGTATATCGACCCCACAGTGTCACAATAACTGAATT 660
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 TGGTGCTGTTGGGGATGGTGTGACTCTCAATACCAAAGCATTCCAGAACGCAATCTTCTA 720
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 CCTCAATTCATTTGCAGACAAGGGTGGCGCACAGCTCTTCGTGCCTGCGGGAAGGTGGCT 780
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 GACAGGGAGTTTTAGTCTTATCAGCCATCTCACTTTGTCACTGGATAAGGATGCAGAAAT 840
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 AATTGGATCTCCGGATTCATCCGATTGGCCAGTCATTGATCCTCTTCCATCCTATGGGCG 900
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 AGGTAGAGAGCTCCCTGGAAAAAGACATCAGAGTCTAATTTTTGGAACTAATCTAACAGA 960
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 TGTAATAATTACTGGCGCTAATGGTACCATTGATGGCCAGGGAGCCATTTGGTGGGATTG 1020
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 GTTCCACAGCAACACACTGAATTATACTAGGCCACATCTTGTTGAGTTGATGTACTCCAC 1080
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 CGATGTTGTTATATCCAATTTAACCTTCAAGAACTCAC-CGTTTTGGAATATCCATCCTG 1139
consensus_6690#1 ---------------------------CAGGANTCGGCACGAGTTGGAATATCCATCCTG 33
** ** * ** *****************
consensus_6690#0 TATACTGCAGCCAAGTGCTTGTCCAGCATGTCACAATCCTAGCGCCCCTGAATTCACCGA 1199
consensus_6690#1 TATACTGCAGCCAAGTGCTTGTCCAGCATGTNACAATCCTAGCGCCCCNGAATTCNC-GA 92
******************************* **************** ****** * **
consensus_6690#0 ACACTGATGGCATTGATCCAGATTCGTCCACAAATGTCTGCATTGATCATTGTTATGTCA 1259
consensus_6690#1 ACACTGATGGNATTGATCCANATTCGTCCACAAATGTCTGCATTGATCATTGTTATGTCA 152
********** ********* ***************************************
consensus_6690#0 GAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGGGATGAGTATGGCATTTCCTTTG 1319
consensus_6690#1 GAAATGGAGATGATGTTATTGTCATAAAAAGTGGGTGGGATG------------------ 194
******************************************
consensus_6690#0 CTCGTCCTAGCACAAACATCAGTATCAGCAACATCACAGGAGAGACAAGGGGTGGTGCAG 1379
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 GGATTGCCTTTGGAAGTGAGATGTCAGGTGGCATATCCGAAGTCCGGGCTGAGGGTCTCC 1439
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 GCATCGTCAACTCAATGCACGGGATCAGAATCAAGACCGCTCCAGGGCGTGGAGGGTATG 1499
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 TGAAGAACGTGTACATATCTGATGTGAGCATGGACAATGTTTCGATGGCCATCAGGATCA 1559
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 CCGGAAACTTTGGTGAACATCCTGATGACAAATATGATAGAAATGCTCTCCCAATGATAA 1619
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 GCAATATTACAATCGAAAATGTGGTCGGCGTCAATGTTGGTGTCGCTGGCATCTTGGAAG 1679
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 GAATTGAGGGGGACAACTTCAGCAGCATTTGCCTGTCCAATGTTTCCCTCAGTGTACAGT 1739
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 CTATGCATCCCTGGAATTGTTCGCTTATCGAAGGTTATTCAAACTCTGTGATCCCAGAGT 1799
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 CATGTGAGCAACTCAGAACAGATTGTGGACAGACACCAATTTGCTATGATGGTGGAAGTT 1859
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 CTTCAGCAATACATGCACAGGCAGCCAGACATAGATTGTCGAGTGCCAGCAGATTGCTAA 1919
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 ATCCTTTACTGAAGTTGGCGATGCTGTAGAGTAGGTAGAGAGATGCTCTATTTATTTGCT 1979
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 GCAGAGGGGCTTTTGCTTCGTGGGATGCGTCATGTACATCTGATTCTTGCGATTGTTTTT 2039
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 TTTTTATTAGCACGATGTTTGCTTCTTGTATATAGTTGTGGGAGATGAATGTTGGTGTAC 2099
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 CATGCATGTTTTTGTCACCATCTTTGATTTGTGATGTATCTGTTCCATAGCCTTTTGTTG 2159
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 GGAAGAAAACAGTATGATCCTCCTTCCAATATGTCCAGTTTTGTGGATAGGGTCATCAAA 2219
consensus_6690#1 ------------------------------------------------------------
consensus_6690#0 ATTGTAACTTGTAAGTTGAGTAGCAACAAGAGAGAAGAGTCAGTAGCGGC 2269
consensus_6690#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||