These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1608 fasta sequence [CGACCTTCGGTGCGGCGGCTCAACGAGGCGATGGACGGCGGCGGCGGAGGCCGGCGGCCTCGTGCCGTGTTCATGGCCTTCGGCACCCGCGGCGACGTCTTCCCCATAGCTGCACTTGCTGCAGCTTTTGCGCAGGACCAACGACAGTATGGTGTAGTGTTCATCACACATTCAGCACATCAGAGCTTGTCGACACATCTAGCAGACTGTAATGTTAGATATATGCCTGTGTCAAGCCCACCTGTCCTTGCTGCCGAACAGCTCGAGAGCATCTCATAGGAAAAAGACCATTCAAGTGGAGCACAGGAGAGAGTGCTTGTCTGCCGTCGAAAATGTTTTTGGAAATGACATGAGCACTCATGGTGATTTCATTGTGATCAACTTCTTTGCGTTGGAAGGTTGGCATCTTGCAGAATTGTTCCAAGTTAAGTGCATCATTGCTGCTCCCTATTTTGTTCCATACAGTGCACCTGCATCATTTGAACGCCAATTTAAACAAAGTCTTCCTCTTCTATACAAGTACTTTCAAGAAGCTCCCCTGAACATGGTTTGCTGGACAGACATTACCCACTGGATGTGGGCATTGTTCATGGAAAGTTGGGGATCATGGAGAAATGATAGTCTAAATCTTAGCCCAATTCCTTTTACAGATCCAGTAACAAATCTTCCTCTGTGGTATATGCGAGAAGAATCCCCATTGTTGCTGTATGGTTTCAGCAAGGAAATTGTTGAGTGCCCAGCATGGGTTTTCTTAGAAATCCAAAAGCATTTCTGATGGTGCTTAAAGCTGTCATAGAGAAAACAGATTACAGATTTATCCTTTTCTCATCTGGATACCAGCCATTAGATTCTGCAATACAATATTTTGCTCCTTCAGTAGCAGAATCAAGTGAGTATCAGGCATCTGCTCTTCATTGTGACAGCAATCTCCTTTTTAATGGTCGACTCTTTTGCTTTTCTGGATCAATACCATACAGTTGGCTGTTTCCTAAATGTGCAGTTGCTATTCACCATGCTGGCAGTGGATCTACAGCTGCAGCACTTTTTGCCGGCATCCCTCAGATTTCATGTCCTTTCCTGCTGGATCAGTTTTACTGGGCAGAAAGGCTACACTGGCTAGGAGTGGCACCTGAGCCCCTAGGAAGACAACATCTAATTCCGGATACTGACAATGCCTCAAGCATCAACAGTGCTGCAGATATGCTGATTGGAGCTATCAAATCGGCATTATCACCTGAAATTAAAGCTCAGGCAACCAGAATCGCTAACAAACTTTCTTCTGAGGACGGGATTGGAGAAGCCCTCAGGATCTTGAAAGAGAGTTTTGCCCCAAATTGAAAGTTAAGTGATAAGAAG-CA-GGGGATACGACGAACCAATTGCACGTAAAATAGTTATGTGCTTTGAAGTTTGAATTAGCATTTGTCACTCCAATTGATTTATTATGCGCCGTATGAACTGGAAAACAG-CCTTGGTCACTAGTATTTTTCTTGTTTGGAATGGAATGGAATGGCAAAACGGCAATATGATGAACTTATGCAGAGA----CTTGTGTTGTAGATAGAGTAATCATGAATAAAGAAAACCAAAACCATG-TATATGATAAAAAAAAAA] [+] EMBL AK073717 [CGACCTTCGGTGCGGCGGCTCAACGAGGCGATGGACGGCGGCGGCGGAGGCCGGCGGCCTCGTGCCGTGTTCATGGCCTTCGGCACCCGCGGCGACGTCTTCCCCATAGCTGCACTTGCTGCAGCTTTTGCGCAGGACCAACGACAGTATGGTGTAGTGTTCATCACACATTCAGCACATCAGAGCTTGTCGACACATCTAGCAGACTGTAATGTTAGATATATGCCTGTGTCAAGCCCACCTGTCCTTGCTGCCGAACAGCTCGAGAGCATCTCATAGGAAAAAGACCATTCAAGTGGAGCACAGGAGAGAGTGCTTGTCTGCCGTCGAAAATGTTTTTGGAAATGACATGAGCACTCATGGTGATTTCATTGTGATCAACTTCTTTGCGTTGGAAGGTTGGCATCTTGCAGAATTGTTCCAAGTTAAGTGCATCATTGCTGCTCCCTATTTTGTTCCATACAGTGCACCTGCATCATTTGAACGCCAATTTAAACAAAGTCTTCCTCTTCTATACAAGTACTTTCAAGAAGCTCCCCTGAACATGGTTTGCTGGACAGACATTACCCACTGGATGTGGGCATTGTTCATGGAAAGTTGGGGATCATGGAGAAATGATAGTCTAAATCTTAGCCCAATTCCTTTTACAGATCCAGTAACAAATCTTCCTCTGTGGTATATGCGAGAAGAATCCCCATTGTTGCTGTATGGTTTCAGCAAGGAAATTGTTGAGTGCCCAGCATGGGTTTTCTTAGAAATCCAAAAGCATTTCTGATGGTGCTTAAAGCTGTCATAGAGAAAACAGATTACAGATTTATCCTTTTCTCATCTGGATACCAGCCATTAGATTCTGCAATACAATATTTTGCTCCTTCAGTAGCAGAATCAAGTGAGTATCAGGCATCTGCTCTTCATTGTGACAGCAATCTCCTTTTTAATGGTCGACTCTTTTGCTTTTCTGGATCAATACCATACAGTTGGCTGTTTCCTAAATGTGCAGTTGCTATTCACCATGCTGGCAGTGGATCTACAGCTGCAGCACTTTTTGCCGGCATCCCTCAGATTTCATGTCCTTTCCTGCTGGATCAGTTTTACTGGGCAGAAAGGCTACACTGGCTAGGAGTGGCACCTGAGCCCCTAGGAAGACAACATCTAATTCCGGATACTGACAATGCCTCAAGCATCAACAGTGCTGCAGATATGCTGATTGGAGCTATCAAATCGGCATTATCACCTGAAATTAAAGCTCAGGCAACCAGAATCGCTAACAAACTTTCTTCTGAGGACGGGATTGGAGAAGCCCTCAGGATCTTGAAAGAGAGTTTTGCCCCAAATTGAAAGTTAAGTGATAAGAAG CA GGGGATACGACGAACCAATTGCACGTAAAATAGTTATGTGCTTTGAAGTTTGAATTAGCATTTGTCACTCCAATTGATTTATTATGCGCCGTATGAACTGGAAAACAG CCTTGGTCACTAGTATTTTTCTTGTTTGGAATGGAATGGAATGGCAAAACGGCAATATGATGAACTTATGCAGAGA CTTGTGTTGTAGATAGAGTAATCATGAATAAAGAAAACCAAAACCATG ] [-] EMBL CB677597 [ AGAAAACAGATTACAGATTTATCCTTTTCTCATCTGGATACCAGCCATTAGATTCTGCAATACAATATTTTGCTCCTTCAGTAGCAGAATCAAGTGAGTATCAGGCATCTGCTCTTCATTGTGACAGCAATCTCCTTTTTAATGGTCGACTCTTTTGCTTTTCTGGATCAATACCATACAGTTGGCTGTTTCCTAAATGTGCAGTTGCTATTCACCATGCTGGCAGTGGATCTACAGCTGCAGCACTTTTTGCCGGCATCCCTCAGATTTCATGTCCTTTCCTGCTGGATCAGTTTTACTGGGCAGAAAGGCTACACTGGCTAGGAGTGGCACCTGAGCCCCTAGGAAGACAACATCTAATTCCGGATACTGACAATGCCTCAAGCATCAACAGTGCTGCAGATATGCTGATTGGAGCTATCAAATCGGCATTATCACCTGAAATTAAAGCTCAGGCAACCAGAATCGCTAACAAACTTTCTTCTGAGGACGGGATTGGAGAAGCCCTCAGGATCTTGAAAGAGAGTTTTGCCCCAAATTGAAAGTTAAGTGATAAGAAG CA GGGGATACGACGAACCAATTGCACGTAAAATAGTTATGTGCTTTGAAGTTTGAATTAGCATTTGTCACTCCAATTGATTTATTATGCGCCGTATGAACTGGAAAACAG CCTTGGTCACTAGTATTTTTCTTGTTTGGAATGGAATGGAATGGCAAAACGGCAATATGATGAACTTATGCAGAGA CTTGTGTTGTAGATAGAGTAATCATGAATAAAGAAAACCAAAACCATG ] [+] EMBL BM418678 [ AAAGGCTACACTGGCTAGGAGTGGCACCTGAGCCCCTAGGAAGACAACATCTAATTCCGGATACTGACAATGCCTCAAGCATCAACAGTGCTGCAGATATGCTGATTGGAGCTATCNAATCGGCATTATCACCTGAAATTAAAGCTCAGGCAACCAGAATCGCTAACAAACTTTCTTCTGAGGACGGGATTGGAGAAGCCCTCAGGATCTTGAAAGAGAGTTTTGCCCCNAATTGAAAGTTAAGTGATAAGAAGCCACGGGGATACGACGAACCCATTGCACGTAAAATAGTTATGTGCTTTGAAGTTTGAATTAGCATTTGTCACTCCCATTGATTTATTATGCGCCGTATGAACTGGAAAACAGCCCTTGGTCACTAGTATTTTTCTTGTTTGGAATGGAATGGAATGGC AAACGGCAATATGATGAATTTATGCAGAGACTTCCTTGTGTTGTAGATAGAGTAATCATGAATAAAGAAAACC CCACCCTGATATATGATAAAAAAAAAA] consensusID : consensus_6694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence [ACCTTCGGTGCGGCGGCTCAACGAGGCGATGGACGGCGGCGGCGGAGGCCGGCGGCCTCGTGCCGTGTTCATGGCCTTCGGCACCCGCGGCGACGTCTTCCCCATAGCTGCACTTGCTGCAGCTTTTGCGCAGGACCAACGACAGTATGGTGTAGTGTTCATCACACATTCAGCACATCAGAGCTTGTCGACACATCTAGCAGACTGTAATGTTAGATATATGCCTGTGTCAAGCCCACCTGTCCTTGCTGCCGAACAGCTCGAGAGCATCTCATAGGAAAAAGACCATTCAAGTGGAGCACAGGAGAGAGTGCTTGTCTGCCGTCGAAAATGTTTTTGGAAATGACATGAGCACTCATGGTGATTTCATTGTGATCAACTTCTTTGCGTTGGAAGGTTGGCATCTTGCAGAATTGTTCCAAGTTAAGTGCATCATTGCTGCTCCCTATTTTGTTCCATACAGTGCACCTGCATCATTTGAACGCCAATTTAAACAAAGTCTTCCTCTTCTATACAAGTACTTTCAAGAAGCTCCCCTGAACATGGTTTGCTGGACAGACATTACCCACTGGATGTGGGCATTGTTCATGGAAAGTTGGGGATCATGGAGAAATGATAGTCTAAATCTTAGCCCAATTCCTTTTACAGATCCAGTAACAAATCTTCCTCTGTGGTATATGCGAGAAGAATCCCCATTGTTGCTGTATGGTTTCAGCAAGGAAATTGTTGAGTGCCCAGGATATTGGCCATTCAGCGCTCATGTTTGTGGTTTTTGGTTTCTTCCTA] [+] EMBL CB677596 [ACCTTCGGTGCGGCGGCTCAACGAGGCGATGGACGGCGGCGGCGGAGGCCGGCGGCCTCGTGCCGTGTTCATGGCCTTCGGCACCCGCGGCGACGTCTTCCCCATAGCTGCACTTGCTGCAGCTTTTGCGCAGGACCAACGACAGTATGGTGTAGTGTTCATCACACATTCAGCACATCAGAGCTTGTCGACACATCTAGCAGACTGTAATGTTAGATATATGCCTGTGTCAAGCCCACCTGTCCTTGCTGCCGAACAGCTCGAGAGCATCTCATAGGAAAAAGACCATTCAAGTGGAGCACAGGAGAGAGTGCTTGTCTGCCGTCGAAAATGTTTTTGGAAATGACATGAGCACTCATGGTGATTTCATTGTGATCAACTTCTTTGCGTTGGAAGGTTGGCATCTTGCAGAATTGTTCCAAGTTAAGTGCATCATTGCTGCTCCCTATTTTGTTCCATACAGTGCACCTGCATCATTTGAACGCCAATTTAAACAAAGTCTTCCTCTTCTATACAAGTACTTTCAAGAAGCTCCCCTGAACATGGTTTGCTGGACAGACATTACCCACTGGATGTGGGCATTGTTCATGGAAAGTTGGGGATCATGGAGAAATGATAGTCTAAATCTTAGCCCAATTCCTTTTACAGATCCAGTAACAAATCTTCCTCTGTGGTATATGCGAGAAGAATCCCCATTGTTGCTGTATGGTTTCAGCAAGGAAATTGTTGAGTGCCCAGGATATTGGCCATTCAGCGCTCATGTTTGTGGTTTTTGGTTTCTTCCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6694#0 CGACCTTCGGTGCGGCGGCTCAACGAGGCGATGGACGGCGGCGGCGGAGGCCGGCGGCCT 60 consensus_6694#1 --ACCTTCGGTGCGGCGGCTCAACGAGGCGATGGACGGCGGCGGCGGAGGCCGGCGGCCT 58 ********************************************************** consensus_6694#0 CGTGCCGTGTTCATGGCCTTCGGCACCCGCGGCGACGTCTTCCCCATAGCTGCACTTGCT 120 consensus_6694#1 CGTGCCGTGTTCATGGCCTTCGGCACCCGCGGCGACGTCTTCCCCATAGCTGCACTTGCT 118 ************************************************************ consensus_6694#0 GCAGCTTTTGCGCAGGACCAACGACAGTATGGTGTAGTGTTCATCACACATTCAGCACAT 180 consensus_6694#1 GCAGCTTTTGCGCAGGACCAACGACAGTATGGTGTAGTGTTCATCACACATTCAGCACAT 178 ************************************************************ consensus_6694#0 CAGAGCTTGTCGACACATCTAGCAGACTGTAATGTTAGATATATGCCTGTGTCAAGCCCA 240 consensus_6694#1 CAGAGCTTGTCGACACATCTAGCAGACTGTAATGTTAGATATATGCCTGTGTCAAGCCCA 238 ************************************************************ consensus_6694#0 CCTGTCCTTGCTGCCGAACAGCTCGAGAGCATCTCATAGGAAAAAGACCATTCAAGTGGA 300 consensus_6694#1 CCTGTCCTTGCTGCCGAACAGCTCGAGAGCATCTCATAGGAAAAAGACCATTCAAGTGGA 298 ************************************************************ consensus_6694#0 GCACAGGAGAGAGTGCTTGTCTGCCGTCGAAAATGTTTTTGGAAATGACATGAGCACTCA 360 consensus_6694#1 GCACAGGAGAGAGTGCTTGTCTGCCGTCGAAAATGTTTTTGGAAATGACATGAGCACTCA 358 ************************************************************ consensus_6694#0 TGGTGATTTCATTGTGATCAACTTCTTTGCGTTGGAAGGTTGGCATCTTGCAGAATTGTT 420 consensus_6694#1 TGGTGATTTCATTGTGATCAACTTCTTTGCGTTGGAAGGTTGGCATCTTGCAGAATTGTT 418 ************************************************************ consensus_6694#0 CCAAGTTAAGTGCATCATTGCTGCTCCCTATTTTGTTCCATACAGTGCACCTGCATCATT 480 consensus_6694#1 CCAAGTTAAGTGCATCATTGCTGCTCCCTATTTTGTTCCATACAGTGCACCTGCATCATT 478 ************************************************************ consensus_6694#0 TGAACGCCAATTTAAACAAAGTCTTCCTCTTCTATACAAGTACTTTCAAGAAGCTCCCCT 540 consensus_6694#1 TGAACGCCAATTTAAACAAAGTCTTCCTCTTCTATACAAGTACTTTCAAGAAGCTCCCCT 538 ************************************************************ consensus_6694#0 GAACATGGTTTGCTGGACAGACATTACCCACTGGATGTGGGCATTGTTCATGGAAAGTTG 600 consensus_6694#1 GAACATGGTTTGCTGGACAGACATTACCCACTGGATGTGGGCATTGTTCATGGAAAGTTG 598 ************************************************************ consensus_6694#0 GGGATCATGGAGAAATGATAGTCTAAATCTTAGCCCAATTCCTTTTACAGATCCAGTAAC 660 consensus_6694#1 GGGATCATGGAGAAATGATAGTCTAAATCTTAGCCCAATTCCTTTTACAGATCCAGTAAC 658 ************************************************************ consensus_6694#0 AAATCTTCCTCTGTGGTATATGCGAGAAGAATCCCCATTGTTGCTGTATGGTTTCAGCAA 720 consensus_6694#1 AAATCTTCCTCTGTGGTATATGCGAGAAGAATCCCCATTGTTGCTGTATGGTTTCAGCAA 718 ************************************************************ consensus_6694#0 GGAAATTGTTGAGTGCCCAGCATGGGTTTTCTTAGAAATCCAAAAGCATTTCTGATGGTG 780 consensus_6694#1 GGAAATTGTTGAGTGCCCAGGATA-------TTGGCCATTCAGCGCTCATGTTTGTGGTT 771 ******************** ** ** * ** ** * * **** consensus_6694#0 CTTAAAGCTGTCATAGAGAAAACAGATTACAGATTTATCCTTTTCTCATCTGGATACCAG 840 consensus_6694#1 TTTGGTTTCTTCCTA--------------------------------------------- 786 ** ** ** consensus_6694#0 CCATTAGATTCTGCAATACAATATTTTGCTCCTTCAGTAGCAGAATCAAGTGAGTATCAG 900 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 GCATCTGCTCTTCATTGTGACAGCAATCTCCTTTTTAATGGTCGACTCTTTTGCTTTTCT 960 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 GGATCAATACCATACAGTTGGCTGTTTCCTAAATGTGCAGTTGCTATTCACCATGCTGGC 1020 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 AGTGGATCTACAGCTGCAGCACTTTTTGCCGGCATCCCTCAGATTTCATGTCCTTTCCTG 1080 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 CTGGATCAGTTTTACTGGGCAGAAAGGCTACACTGGCTAGGAGTGGCACCTGAGCCCCTA 1140 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 GGAAGACAACATCTAATTCCGGATACTGACAATGCCTCAAGCATCAACAGTGCTGCAGAT 1200 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 ATGCTGATTGGAGCTATCAAATCGGCATTATCACCTGAAATTAAAGCTCAGGCAACCAGA 1260 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 ATCGCTAACAAACTTTCTTCTGAGGACGGGATTGGAGAAGCCCTCAGGATCTTGAAAGAG 1320 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 AGTTTTGCCCCAAATTGAAAGTTAAGTGATAAGAAGCAGGGGATACGACGAACCAATTGC 1380 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 ACGTAAAATAGTTATGTGCTTTGAAGTTTGAATTAGCATTTGTCACTCCAATTGATTTAT 1440 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 TATGCGCCGTATGAACTGGAAAACAGCCTTGGTCACTAGTATTTTTCTTGTTTGGAATGG 1500 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 AATGGAATGGCAAAACGGCAATATGATGAACTTATGCAGAGACTTGTGTTGTAGATAGAG 1560 consensus_6694#1 ------------------------------------------------------------ consensus_6694#0 TAATCATGAATAAAGAAAACCAAAACCATGTATATGATAAAAAAAAAA 1608 consensus_6694#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||