These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_67#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2022 fasta sequence [CTCCCATCCCACCCACCAATGGCGGCGGCCGCGGAGTTCATCTGATCGTGCTCGTAATAGTAATTCAAGGATTGTCTAGTCACTGTGTTGGCGGATTAAATTGTTCTCAGCATGGTATCTGAGAAAGCCAAATCAAATAAGCGGAAAAAGTTAGAATGCATAATCAGCCGCCTCCCAAGAGACTTGATCGAGCAGGTATTTCTGAGCCTTCCAGTGAAAACTTTGTTGAATTGCATTGGTGTCTGCAAGCAGTGGCGCAGCATAATCCAAGATCCCAAATTTGTAACATCACACCTCCAGCTTGCGCCCCATTGTGCGCTCCTATTCTTCCCTCGAGAGTTGGTTTCTTCATGTGGGCTGTACCCGAGCGAAGCCATCCTCATCGATGAAGCCTGGTCACAGTCAATATGGGATGTGCCAGTGATTGGGCCAGATGATTTCCTGTGTGGTTCCTCCAATGGGCTTGTTTGCTTATACACACACACTACAACAATCAAGATAGCAAACCTTGCAACTGGTGAATGCCTGCATCTTGCGAAACCGGCAAAGAATTTGACGGACGATCACTTCTCGTTCTACAGCTTTGGATTTCACCCATTGACAAAAGAATACAAGGTTACACACTTCCTTGCTAGTAGTCATGAGACTCGCATCCGTGCAAAAGTTGACAGCTTCGATGGCGTTCAAGTTTACACACTTGGTGATGAGAAATGGAAATATATAGGAGCCCCAGAGGCTCTAAGCTTGAACTGTGTGAAGAACTCTGGAGTAGTCAATGTTGATGGAACAATGTATTGGCTAACTGAAGACCAGGGAACCAGTTGGCATCATGCAGTCATGTCCTTCGATCTTAACAAAGAAAGTTTTGGACGCATACAACTGCCAACAGCAGCACTTGAAGACTCTGCATTTTATGGTCCTCGTCGGTACTGGATCAAAGAGATAGATGGAAAGGTATGCATTGCAACATGTCAAACTAGTGATAATCAACCCATATTGCTTAGAGGTGAGATTCAGATCTGGGCTCTTGACATCAATCTAGAGCAAAAGTGGATCCAGAAGTACATTATTCAGCCCTCAGCACAGCACATACCTGGACCAAATATTGTTCATAGGGATAAGATTGTGTTGCAACATGATGCCAGGAACCTATGTTCTTATGAGCTGCTTGGAAAGAACGTCGAGGTTAAATTGAGTAATATGGAGAAGCTGTTAGATTTCAGTCCCCGCAAACCAGGGAGTATGCAAGTCTACACCTTTGTGAAATCACTTGTACGATTGGATTCATACAAGAAGGCCAGTATTGTGCGTAGACCAAAACGGAAGGTTGGGAATTGAAGAAATGGGAAGCATGGGAGAGCCAGCGTCGAAAGATAGAGGACATATGGAAGAAAGTCCTGCAATCGGAGCAATATAGTATTGTAACTACGAAGAATTTGCGCACAACAATTAACAGGCTGATGCAGCGTCTACCGGATGATGAAGCATTGAAGTGTATAGGCATGAAAATTGATCAAATGTTACATTATCTACCAGAAGATTGTCCAAATCAGCATCCAAGGTCTCTCCGGCGTCTTAATTGGGTGGCGCAGAATCAGGACATGGATAATTTAGAGGCTCGTGTGGATAAACTAAATAAATTGAGGCATGTGATGATGTCTTCCGGACGGCAAGAAGTTGGTTAAGCGATCAGGGTACTTCGATTTCCACCGCTGATGCTTCATTTTGGTTCGACCTCCAACATTTTCTACTCGGTGGCGGCGGTGCGAGATGATGGTGGTGATATGAAGATTATAGAACTTTTTCCTGGCATTTTGGGTTTCTGGGACAATTCTTGCTGCTACGTCCTCCGTTTTATCATCCAGTTTTTTTGTTTGTGAACCTCCCCTTCTGTGGATAAAATTCTGACTGATGATAGTATTTCTTCGATAGACCGTGCATCCGGATTCGCGATCTCAAGGTACAATTGTACAAAGGTGCTATTAAGGCTGTGTTCGTTGATTGCTGTCGGTAACAAATCTC] [+] EMBL AK121391 [CTCCCATCCCACCCACCAATGGCGGCGGCCGCGGAGTTCATCTGATCGTGCTCGTAATAGTAATTCAAGGATTGTCTAGTCACTGTGTTGGCGGATTAAATTGTTCTCAGCATGGTATCTGAGAAAGCCAAATCAAATAAGCGGAAAAAGTTAGAATGCATAATCAGCCGCCTCCCAAGAGACTTGATCGAGCAGGTATTTCTGAGCCTTCCAGTGAAAACTTTGTTGAATTGCATTGGTGTCTGCAAGCAGTGGCGCAGCATAATCCAAGATCCCAAATTTGTAACATCACACCTCCAGCTTGCGCCCCATTGTGCGCTCCTATTCTTCCCTCGAGAGTTGGTTTCTTCATGTGGGCTGTACCCGAGCGAAGCCATCCTCATCGATGAAGCCTGGTCACAGTCAATATGGGATGTGCCAGTGATTGGGCCAGATGATTTCCTGTGTGGTTCCTCCAATGGGCTTGTTTGCTTATACACACACACTACAACAATCAAGATAGCAAACCTTGCAACTGGTGAATGCCTGCATCTTGCGAAACCGGCAAAGAATTTGACGGACGATCACTTCTCGTTCTACAGCTTTGGATTTCACCCATTGACAAAAGAATACAAGGTTACACACTTCCTTGCTAGTAGTCATGAGACTCGCATCCGTGCAAAAGTTGACAGCTTCGATGGCGTTCAAGTTTACACACTTGGTGATGAGAAATGGAAATATATAGGAGCCCCAGAGGCTCTAAGCTTGAACTGTGTGAAGAACTCTGGAGTAGTCAATGTTGATGGAACAATGTATTGGCTAACTGAAGACCAGGGAACCAGTTGGCATCATGCAGTCATGTCCTTCGATCTTAACAAAGAAAGTTTTGGACGCATACAACTGCCAACAGCAGCACTTGAAGACTCTGCATTTTATGGTCCTCGTCGGTACTGGATCAAAGAGATAGATGGAAAGGTATGCATTGCAACATGTCAAACTAGTGATAATCAACCCATATTGCTTAGAGGTGAGATTCAGATCTGGGCTCTTGACATCAATCTAGAGCAAAAGTGGATCCAGAAGTACATTATTCAGCCCTCAGCACAGCACATACCTGGACCAAATATTGTTCATAGGGATAAGATTGTGTTGCAACATGATGCCAGGAACCTATGTTCTTATGAGCTGCTTGGAAAGAACGTCGAGGTTAAATTGAGTAATATGGAGAAGCTGTTAGATTTCAGTCCCCGCAAACCAGGGAGTATGCAAGTCTACACCTTTGTGAAATCACTTGTACGATTGGATTCATACAAGAAGGCCAGTATTGTGCGTAGACCAAAACGGAAGGTTGGGAATTGAAGAAATGGGAAGCATGGGAGAGCCAGCGTCGAAAGATAGAGGACATATGGAAGAAAGTCCTGCAATCGGAGCAATATAGTATTGTAACTACGAAGAATTTGCGCACAACAATTAACAGGCTGATGCAGCGTCTACCGGATGATGAAGCATTGAAGTGTATAGGCATGAAAATTGATCAAATGTTACATTATCTACCAGAAGATTGTCCAAATCAGCATCCAAGGTCTCTCCGGCGTCTTAATTGGGTGGCGCAGAATCAGGACATGGATAATTTAGAGGCTCGTGTGGATAAACTAAATAAATTGAGGCATGTGATGATGTCTTCCGGACGGCAAGAAGTTGGTTAAGCGATCAGGGTACTTCGATTTCCACCGCTGATGCTTCATTTTGGTTCGACCTCCAACATTTTCTACTCGGTGGCGGCGGTGCGAGATGATGGTGGTGATATGAAGATTATAGAACTTTTTCCTGGCATTTTGGGTTTCTGGGACAATTCTTGCTGCTACGTCCTCCGTTTTATCATCCAGTTTTTTTGTTTGTGAACCTCCCCTTCTGTGGATAAAATTCTGACTGATGATAGTATTTCTTCGATAGACCGTGCATCCGGATTCGCGATCTCAAGGTACAATTGTACAAAGGTGCTATTAAGGCTGTGTTCGTTGATTGCTGTCGGTAACAAATCTC] consensusID : consensus_67#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [GGAAGAAAGTCCTGCAATCGGAGCAATATAGTATTGTAACTACGAAGAATTTGCGCACAACAATTAACAGGCTGATGCATGCGNCTACCGGATGATGAAGCATTGAAGNGTATAGGCATGAAAATTGATCAAATGTTACATTATCTACCAGAAGATTGTCCAAATCAGCATCCAAGGTCTCTCCGGCGTCTTAATTGGGTGGCGCAGAATCAGGACATGGATAATTTAGAGGCTCGTGTGGATAAACTAAGTAAATTGAGGCATGTGATGATGTCTTCCGGACGGCAAGAAGTTGGTTAAGCGATCAGGGTACTTCGATTTCCACCGCTGATGCTTCATTTTGGTTCGACCTCCAACATTTTCTACTCGGTGGCGGCGGTGCGAGATGATGGNGNTGATATGAAGATTATANAACTTTTTCCTGGCATTTNGNGTTTCTGGGACAATTCTTGCTGCTACGNCCTACGTTNTATCATCCANNTTTTTTGTTTGNGAACCTCCCCTTCTGTGGATAAAATTCTGACTGATGATAGTANTTNTTCGCTTTGTTAAGCTAGNGNCTTGGTATGACAACGAATGNGGNCNCAACCGNTGGNGNNGCTTCAACTTTTTCGTCCCATGAA] [+] EMBL CA765353 [GGAAGAAAGTCCTGCAATCGGAGCAATATAGTATTGTAACTACGAAGAATTTGCGCACAACAATTAACAGGCTGATGCATGCGNCTACCGGATGATGAAGCATTGAAGNGTATAGGCATGAAAATTGATCAAATGTTACATTATCTACCAGAAGATTGTCCAAATCAGCATCCAAGGTCTCTCCGGCGTCTTAATTGGGTGGCGCAGAATCAGGACATGGATAATTTAGAGGCTCGTGTGGATAAACTAAGTAAATTGAGGCATGTGATGATGTCTTCCGGACGGCAAGAAGTTGGTTAAGCGATCAGGGTACTTCGATTTCCACCGCTGATGCTTCATTTTGGTTCGACCTCCAACATTTTCTACTCGGTGGCGGCGGTGCGAGATGATGGNGNTGATATGAAGATTATANAACTTTTTCCTGGCATTTNGNGTTTCTGGGACAATTCTTGCTGCTACGNCCTACGTTNTATCATCCANNTTTTTTGTTTGNGAACCTCCCCTTCTGTGGATAAAATTCTGACTGATGATAGTANTTNTTCGCTTTGTTAAGCTAGNGNCTTGGTATGACAACGAATGNGGNCNCAACCGNTGGNGNNGCTTCAACTTTTTCGTCCCATGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_67#0 CTCCCATCCCACCCACCAATGGCGGCGGCCGCGGAGTTCATCTGATCGTGCTCGTAATAG 60 consensus_67#1 ------------------------------------------------------------ consensus_67#0 TAATTCAAGGATTGTCTAGTCACTGTGTTGGCGGATTAAATTGTTCTCAGCATGGTATCT 120 consensus_67#1 ------------------------------------------------------------ consensus_67#0 GAGAAAGCCAAATCAAATAAGCGGAAAAAGTTAGAATGCATAATCAGCCGCCTCCCAAGA 180 consensus_67#1 ------------------------------------------------------------ consensus_67#0 GACTTGATCGAGCAGGTATTTCTGAGCCTTCCAGTGAAAACTTTGTTGAATTGCATTGGT 240 consensus_67#1 ------------------------------------------------------------ consensus_67#0 GTCTGCAAGCAGTGGCGCAGCATAATCCAAGATCCCAAATTTGTAACATCACACCTCCAG 300 consensus_67#1 ------------------------------------------------------------ consensus_67#0 CTTGCGCCCCATTGTGCGCTCCTATTCTTCCCTCGAGAGTTGGTTTCTTCATGTGGGCTG 360 consensus_67#1 ------------------------------------------------------------ consensus_67#0 TACCCGAGCGAAGCCATCCTCATCGATGAAGCCTGGTCACAGTCAATATGGGATGTGCCA 420 consensus_67#1 ------------------------------------------------------------ consensus_67#0 GTGATTGGGCCAGATGATTTCCTGTGTGGTTCCTCCAATGGGCTTGTTTGCTTATACACA 480 consensus_67#1 ------------------------------------------------------------ consensus_67#0 CACACTACAACAATCAAGATAGCAAACCTTGCAACTGGTGAATGCCTGCATCTTGCGAAA 540 consensus_67#1 ------------------------------------------------------------ consensus_67#0 CCGGCAAAGAATTTGACGGACGATCACTTCTCGTTCTACAGCTTTGGATTTCACCCATTG 600 consensus_67#1 ------------------------------------------------------------ consensus_67#0 ACAAAAGAATACAAGGTTACACACTTCCTTGCTAGTAGTCATGAGACTCGCATCCGTGCA 660 consensus_67#1 ------------------------------------------------------------ consensus_67#0 AAAGTTGACAGCTTCGATGGCGTTCAAGTTTACACACTTGGTGATGAGAAATGGAAATAT 720 consensus_67#1 ------------------------------------------------------------ consensus_67#0 ATAGGAGCCCCAGAGGCTCTAAGCTTGAACTGTGTGAAGAACTCTGGAGTAGTCAATGTT 780 consensus_67#1 ------------------------------------------------------------ consensus_67#0 GATGGAACAATGTATTGGCTAACTGAAGACCAGGGAACCAGTTGGCATCATGCAGTCATG 840 consensus_67#1 ------------------------------------------------------------ consensus_67#0 TCCTTCGATCTTAACAAAGAAAGTTTTGGACGCATACAACTGCCAACAGCAGCACTTGAA 900 consensus_67#1 ------------------------------------------------------------ consensus_67#0 GACTCTGCATTTTATGGTCCTCGTCGGTACTGGATCAAAGAGATAGATGGAAAGGTATGC 960 consensus_67#1 ------------------------------------------------------------ consensus_67#0 ATTGCAACATGTCAAACTAGTGATAATCAACCCATATTGCTTAGAGGTGAGATTCAGATC 1020 consensus_67#1 ------------------------------------------------------------ consensus_67#0 TGGGCTCTTGACATCAATCTAGAGCAAAAGTGGATCCAGAAGTACATTATTCAGCCCTCA 1080 consensus_67#1 ------------------------------------------------------------ consensus_67#0 GCACAGCACATACCTGGACCAAATATTGTTCATAGGGATAAGATTGTGTTGCAACATGAT 1140 consensus_67#1 ------------------------------------------------------------ consensus_67#0 GCCAGGAACCTATGTTCTTATGAGCTGCTTGGAAAGAACGTCGAGGTTAAATTGAGTAAT 1200 consensus_67#1 ------------------------------------------------------------ consensus_67#0 ATGGAGAAGCTGTTAGATTTCAGTCCCCGCAAACCAGGGAGTATGCAAGTCTACACCTTT 1260 consensus_67#1 ------------------------------------------------------------ consensus_67#0 GTGAAATCACTTGTACGATTGGATTCATACAAGAAGGCCAGTATTGTGCGTAGACCAAAA 1320 consensus_67#1 ------------------------------------------------------------ consensus_67#0 CGGAAGGTTGGGAATTGAAGAAATGGGAAGCATGGGAGAGCCAGCGTCGAAAGATAGAGG 1380 consensus_67#1 ------------------------------------------------------------ consensus_67#0 ACATATGGAAGAAAGTCCTGCAATCGGAGCAATATAGTATTGTAACTACGAAGAATTTGC 1440 consensus_67#1 ------GGAAGAAAGTCCTGCAATCGGAGCAATATAGTATTGTAACTACGAAGAATTTGC 54 ****************************************************** consensus_67#0 GCACAACAATTAACAGGCTGATGCA-GCGTCTACCGGATGATGAAGCATTGAAGTGTATA 1499 consensus_67#1 GCACAACAATTAACAGGCTGATGCATGCGNCTACCGGATGATGAAGCATTGAAGNGTATA 114 ************************* *** ************************ ***** consensus_67#0 GGCATGAAAATTGATCAAATGTTACATTATCTACCAGAAGATTGTCCAAATCAGCATCCA 1559 consensus_67#1 GGCATGAAAATTGATCAAATGTTACATTATCTACCAGAAGATTGTCCAAATCAGCATCCA 174 ************************************************************ consensus_67#0 AGGTCTCTCCGGCGTCTTAATTGGGTGGCGCAGAATCAGGACATGGATAATTTAGAGGCT 1619 consensus_67#1 AGGTCTCTCCGGCGTCTTAATTGGGTGGCGCAGAATCAGGACATGGATAATTTAGAGGCT 234 ************************************************************ consensus_67#0 CGTGTGGATAAACTAAATAAATTGAGGCATGTGATGATGTCTTCCGGACGGCAAGAAGTT 1679 consensus_67#1 CGTGTGGATAAACTAAGTAAATTGAGGCATGTGATGATGTCTTCCGGACGGCAAGAAGTT 294 **************** ******************************************* consensus_67#0 GGTTAAGCGATCAGGGTACTTCGATTTCCACCGCTGATGCTTCATTTTGGTTCGACCTCC 1739 consensus_67#1 GGTTAAGCGATCAGGGTACTTCGATTTCCACCGCTGATGCTTCATTTTGGTTCGACCTCC 354 ************************************************************ consensus_67#0 AACATTTTCTACTCGGTGGCGGCGGTGCGAGATGATGGTGGTGATATGAAGATTATAGAA 1799 consensus_67#1 AACATTTTCTACTCGGTGGCGGCGGTGCGAGATGATGGNGNTGATATGAAGATTATANAA 414 ************************************** * **************** ** consensus_67#0 CTTTTTCCTGGCATTTTGGGTTTCTGGGACAATTCTTGCTGCTACGTCCTCCGTTTTATC 1859 consensus_67#1 CTTTTTCCTGGCATTTNGNGTTTCTGGGACAATTCTTGCTGCTACGNCCTACGTTNTATC 474 **************** * *************************** *** **** **** consensus_67#0 ATCCAGTTTTTTTGTTTGTGAACCTCCCCTTCTGTGGATAAAATTCTGACTGATGATAGT 1919 consensus_67#1 ATCCANNTTTTTTGTTTGNGAACCTCCCCTTCTGTGGATAAAATTCTGACTGATGATAGT 534 ***** *********** ***************************************** consensus_67#0 ATTTCTTCGATAGACCGTGCATCCGGATTCGCGATCTCAAGGTACAATTGTACAAAGGTG 1979 consensus_67#1 ANTTNTTCGCT---TTGTTAAGCTAGNGNCTTGGTATGACAACGAATGNGGNCNCAACCG 591 * ** **** * ** * * * * * * * * * * * * * consensus_67#0 CTATTAAGGCTGTGTTCGTTGATTGCTGTCGGTAACAAATCTC 2022 consensus_67#1 NTGGNGNNGCTTCAACTTTTTCGTCCCATGAA----------- 623 * *** ** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||