These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6701#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 608 fasta sequence [ACCACCACCGCCACGGCCTCTGCCTCTCGCTCTCTCTCTCTCTAGGCGGCGCAAATGGCAGCCTGCGTCGACAAGTGGCCGCCGGCGG-GTA-CCTGTGCCGCCTGCCGGAGAAGTTCTACTGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGGCGCCGGCGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGGACGTGCTGCGCGCCGAGGCGCAGGACGACGCGGACGACGAGCCGCTCCTCCGCAAGTTCTACCACGACCTCGTCCTGTCGCGGACGTCGCTGGAGTCCGCGCTCGCCTCGCTGCTGGCGGCCAAGCTCTGCATCCCCGGCGCGCTGCCGCAGGACCAGCTCCGGGACCTCCTCGCCGGCGCGATCGACGCGCACCCGGAGGACGGATGTTACTTGCTTCTCCCTCTGTCCCTTCTCCTCTCTCTCGCCCCGCCCTCCTGTCCCCCCCCCCCGCCCCCCGTCCCGCGTTTCCTCCCCTCCCACCGTCCCCCACTACCTCCCTGGCGGCCCCTCGATGCATTACTCCGCAACTCCTCCCTCGCGCACCTTCCACGACCCCCGGCCCGCCTC] [+] EMBL CA753937 [ACCACCACCGCCACGGCCTCTGCCTCTCGCTCTCTCTCTCTCTAGGCGGCGCAAATGGCAGCCTGCGTCGACAAGTGGCCGCCGGCGGCGTA CCTGTGCCGCCTGCCGGAGAAGTTCTACTGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGGCGCCGGCGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGGACGTGCTGCGCGCCGAGGCGCAGGACGACGCGGACGACGAGCCGCTCCTCCGCAAGTTCTACCACGACCTCGTCCTGTCGCGGACGTCGCTGGAGTCCGCGCTCGCCTCGCTGCTGGCGGCCAAGCTCTGCATCCCCGGCGCGCTGCCGCAGGACCAGCTCCGGGACCTCCTCGCCGGCGCGATCGACGCGCACCCGGAGGACGGATGTTACTTGCTTCTCCCTCTGTCCCTTCTCCTCTCTCTCGCCCCGCCCTCCTGTCCCCCCCCCCCGCCCCCCGTCCCGCGTTTCCTCCCCTCCCACCGTCCCCCACTACCTCCCTGGCGGCCCCTCGATGCATTACTCCGCAACTCCTCCCTCGCGCACCTTCCACGACCCCCGGCCCGCCTC] [+] EMBL C74567 [ CCACCACCGCCACGGCCTCTGCCTCTCGCTCTCTCTCTCTCTAGGCGGCGCAAATGGCAGCCTGCGTCGACAAGTGGCCGCCGGCGG GTA CCTGTGCCGCCTGCCGGAGAAGTTCTACTGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGGCG CGGCGCCGGCCGCTAGCGGGAANAGCNGCGACTACGTGTGGGANGTGCT ] [+] EMBL C26592 [ ACCACCGCCACGGCCTCTGCCTCTCGCTCTCTCTCTCTCTAGGCGGCGCAAATGGCAGCCTGCGTCGACAAGTGGCCGCCGGCGG GTAGCCTNTGCCGCCTGCNGGAGAAGTTCTACTGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGGCGCCGGCGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGNACGTGCTGCGCGCCGAGGCGC ] consensusID : consensus_6701#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [GCCTGCGTCGACAAGTGGCCGCCGGCGGCGTACCTGTGCCGCCTGCCGGAGAAGTTCTACTGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGGACGTGCTGCGCGCCGAGGCGCAGGACGACGCGGACGACGAGCCGCTCCTCCGCAAGTTCTACCACGACCTCGTCCTGTCGCGGCCGTCGCTGGAGTCCGCGCTCGCCTCGCTGCTGGCGACCAAGCTCTGCATCCCCGGCGCGCTGCCGCAGGACCAGCTCCGGGACCTCCTCGCCGGCGCGCTCGCCGCGCACCCGGAGGGCCGGGCGCGCCGCGCGCGCCGACCTCGTCGCGGCGCGCGACCGCGACCCGGCCTGCGCCAAGATGGTCCACTGCTTCCTCTACTACAAGGGCTTCCTGGCACTGCAGGCCCACCGCGCGGCGCACGCGCTCTGGTCCGACAACCGCAGGGCGCCGGCTCTCCTCCTCCAGAGCCGCGCCTCCGAGGTGTTCGGCGTCGAC] [+] EMBL BF430848 [GCCTGCGTCGACAAGTGGCCGCCGGCGGCGTACCTGTGCCGCCTGCCGGAGAAGTTCTACTGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGGACGTGCTGCGCGCCGAGGCGCAGGACGACGCGGACGACGAGCCGCTCCTCCGCAAGTTCTACCACGACCTCGTCCTGTCGCGGCCGTCGCTGGAGTCCGCGCTCGCCTCGCTGCTGGCGACCAAGCTCTGCATCCCCGGCGCGCTGCCGCAGGACCAGCTCCGGGACCTCCTCGCCGGCGCGCTCGCCGCGCACCCGGAGGGCCGGGCGCGCCGCGCGCGCCGACCTCGTCGCGGCGCGCGACCGCGACCCGGCCTGCGCCAAGATGGTCCACTGCTTCCTCTACTACAAGGGCTTCCTGGCACTGCAGGCCCACCGCGCGGCGCACGCGCTCTGGTCCGACAACCGCAGGGCGCCGGCTCTCCTCCTCCAGAGCCGCGCCTCCGAGGTGTTCGGCGTCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6701#0 ACCACCACCGCCACGGCCTCTGCCTCTCGCTCTCTCTCTCTCTAGGCGGCGCAAATGGCA 60 consensus_6701#1 ------------------------------------------------------------ consensus_6701#0 GCCTGCGTCGACAAGTGGCCGCCGGCGG-GTACCTGTGCCGCCTGCCGGAGAAGTTCTAC 119 consensus_6701#1 GCCTGCGTCGACAAGTGGCCGCCGGCGGCGTACCTGTGCCGCCTGCCGGAGAAGTTCTAC 60 **************************** ******************************* consensus_6701#0 TGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGGCGGCGCCG 179 consensus_6701#1 TGCGTCTTGCCGGACTGCACCGCTACGGACCGTCCGGTGGTCACCGCATCGG-------- 112 **************************************************** consensus_6701#0 GCGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGGACGTGCTGCGCGCCGAGGCG 239 consensus_6701#1 -CGCCGGCCGCTAGCGGGAGCAGCGGCGACTACGTGTGGGACGTGCTGCGCGCCGAGGCG 171 *********************************************************** consensus_6701#0 CAGGACGACGCGGACGACGAGCCGCTCCTCCGCAAGTTCTACCACGACCTCGTCCTGTCG 299 consensus_6701#1 CAGGACGACGCGGACGACGAGCCGCTCCTCCGCAAGTTCTACCACGACCTCGTCCTGTCG 231 ************************************************************ consensus_6701#0 CGGACGTCGCTGGAGTCCGCGCTCGCCTCGCTGCTGGCGGCCAAGCTCTGCATCCCCGGC 359 consensus_6701#1 CGGCCGTCGCTGGAGTCCGCGCTCGCCTCGCTGCTGGCGACCAAGCTCTGCATCCCCGGC 291 *** *********************************** ******************** consensus_6701#0 GCGCTGCCGCAGGACCAGCTCCGGGACCTCCTCGCCGGCGCGATCGACGCGCACCCGGAG 419 consensus_6701#1 GCGCTGCCGCAGGACCAGCTCCGGGACCTCCTCGCCGGCGCGCTCGCCGCGCACCCGGAG 351 ****************************************** *** ************* consensus_6701#0 GACGGA---TGTTACTTGCTTCTCCCTCTGTCCCTTCTCCTCTCTCTCGCCCCGCCCTC- 475 consensus_6701#1 GGCCGGGCGCGCCGCGCGCGCCGACCTC-GTCGCGGCGCGCGACCGCGACCCGGCCTGCG 410 * * * * * ** * **** *** * * * * *** *** * consensus_6701#0 CTGTCCCCCCCCCCCGCCCCCCGTCCCGC----GTTTCCTCCCCTCCCA---CCGTCCCC 528 consensus_6701#1 CCAAGATGGTCCACTGCTTCCTCTACTACAAGGGCTTCCTGGCACTGCAGGCCCACCGCG 470 * ** * ** ** * * * * ***** * ** ** * * consensus_6701#0 CACTACCTCCCTGGCGGCCCCTCGAT-GCATTACTCCGCAACTCCTCCCTCG----CGCA 583 consensus_6701#1 CGGCGCACGCGCTCTGGTCCGACAACCGCAGGGCGCCGGCTCTCCTCCTCCAGAGCCGCG 530 * * * ** ** * * *** * *** ******* * *** consensus_6701#0 CCTTCCACGACCCCCGGCCCGCCTC 608 consensus_6701#1 CCTCCGAGGTGTTCGGCGTCGAC-- 553 *** * * * * * ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||