These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6702#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1714 fasta sequence [TTCCCCTATCTATAAATAGAGAGGAGAAGGGAGAGTGAGTGTGAGTTGGTCATGGCGGCGATGGGCAGCAAGGATGGCGGCGGCGGCGGTGGCGGGATGGCGGCGCAGGCTGGGAGGCTCGGGGTGGTCGCCTCCGTGGCGTTCAACCTCGCCGCGCTCGCGTTCTACCTCCGCCGGAGATACTTCGGCGGTGACGACGCCGCCGCGGTGAGGAAGAAGGCGGAGGCGGAGGTCGCGCCGTCCTCCGGGAAGCCGCCGGTGACCAAGGACTCAATCATCAACCTCGACCACGGCGACCCGACGATGTACGAGGCGTTCTGGCGCGGCGGCGCCGGGGAGAGGGCGACGATCGTGATCCCGGGGTGGCAGACGATGAGCTACTTCTCCGACGTGGGCAGCCTGTGCTGGTTCCTGGAGCCCGGGTTGGAGCGGGAGGTGCGCCGCCTCCACCGCCTCGTCGGCAACGCCGTCGCCGACGGCTACCACGTGCTCGTCGGCACCGGATCCACCCAGCTCTTCCAGGCCGCGCTCTACGCCCTCTCGCCGCCGGGCCCCTCCGCCCCCATGAACGTCGTCTCCCCCGCACCATACTACTCCTCGTACCCGGCGGTGACGGATTTCCTCAAGTCGGGGCTGTACAGGTGGGCCGGCGACGCCAAGATGTTCGACGGCGACACCTACGTCGAGCTCGTCTGCTCGCCGAGCAACCCGGACGGCGGCATCCGCGAGGCCGTGCTCAAGTCCGGCGACGGCGTCGCCGTCCACGACCTCGCCTACTACTGGCCGCAGTACACCCCCATCACCAGCGCCGCCGCCCATGACATCATGCTCTTCACCGTCTCCAAGTGCACCGGCCACGCCGGCACCCGCCTCGGGTGGGCGCTGGTGAAGGACAGGGCGGTGGCGCAGAAGATGAGCAAGTTCATCGAGCTCAACACCATCGGCGTCTCCAAGGACTCGCAGCTCCGCGCCGCCAAGATCCTCAAGGCCATCACCGACGGCTACGATCGCGCGCCCGCCGCCGGCGACGACGACGACGACTCGAGCCGACTGTTCCACTTCGCCCGCCGCAAGATGGTCTCTCGCTGGGCCAAGCTCCGCGCCGCCGTCGCCGCCTCCGGCATCTTCACCCTCCCCGACGAGCTCCCCGGCCACTGCACCTTCGCCAACGAGACCGTCTCCGCCTACCCCCCGTTCGCGTGGCTGCGCTGCGGGAAGGAAGGGGTGGACGACCTGGAGGGG-TACCTGCGCGAGCGCAAGATCATCAGCCGCGGCGGCGGCAAGTTCGGCGCCGACGGGAGGGTGGTCAGGATCAGCATGCTCGACACCGACGAGGCGTTCGCCATCTTCGTCGACCGCCTCGCCGCCATGAACTGATCGGTCGATCGAGCGAGCGAGCTCGCCCCAGCTAGGGCTTGATCTTGAATCTTGATCGATGTCGACGATGAGATGGTCAGTTAAGTT-GCGAGGATTAAGATCAAGCTTAATTAGTTATCGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGGTTCTAGATATCGATCTGGGGTGCATGCA-TGGTAATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTTAAAATTTCGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGT-GGCTGGTTGGATATCAATATGGATCATAATTAAGTATATATGTGTTGTGAAAAAA] [+] EMBL AK071687 [TTCCCCTATCTATAAATAGAGAGGAGAAGGGAGAGTGAGTGTGAGTTGGTCATGGCGGCGATGGGCAGCAAGGATGGCGGCGGCGGCGGTGGCGGGATGGCGGCGCAGGCTGGGAGGCTCGGGGTGGTCGCCTCCGTGGCGTTCAACCTCGCCGCGCTCGCGTTCTACCTCCGCCGGAGATACTTCGGCGGTGACGACGCCGCCGCGGTGAGGAAGAAGGCGGAGGCGGAGGTCGCGCCGTCCTCCGGGAAGCCGCCGGTGACCAAGGACTCAATCATCAACCTCGACCACGGCGACCCGACGATGTACGAGGCGTTCTGGCGCGGCGGCGCCGGGGAGAGGGCGACGATCGTGATCCCGGGGTGGCAGACGATGAGCTACTTCTCCGACGTGGGCAGCCTGTGCTGGTTCCTGGAGCCCGGGTTGGAGCGGGAGGTGCGCCGCCTCCACCGCCTCGTCGGCAACGCCGTCGCCGACGGCTACCACGTGCTCGTCGGCACCGGATCCACCCAGCTCTTCCAGGCCGCGCTCTACGCCCTCTCGCCGCCGGGCCCCTCCGCCCCCATGAACGTCGTCTCCCCCGCACCATACTACTCCTCGTACCCGGCGGTGACGGATTTCCTCAAGTCGGGGCTGTACAGGTGGGCCGGCGACGCCAAGATGTTCGACGGCGACACCTACGTCGAGCTCGTCTGCTCGCCGAGCAACCCGGACGGCGGCATCCGCGAGGCCGTGCTCAAGTCCGGCGACGGCGTCGCCGTCCACGACCTCGCCTACTACTGGCCGCAGTACACCCCCATCACCAGCGCCGCCGCCCATGACATCATGCTCTTCACCGTCTCCAAGTGCACCGGCCACGCCGGCACCCGCCTCGGGTGGGCGCTGGTGAAGGACAGGGCGGTGGCGCAGAAGATGAGCAAGTTCATCGAGCTCAACACCATCGGCGTCTCCAAGGACTCGCAGCTCCGCGCCGCCAAGATCCTCAAGGCCATCACCGACGGCTACGATCGCGCGCCCGCCGCCGGCGACGACGACGACGACTCGAGCCGACTGTTCCACTTCGCCCGCCGCAAGATGGTCTCTCGCTGGGCCAAGCTCCGCGCCGCCGTCGCCGCCTCCGGCATCTTCACCCTCCCCGACGAGCTCCCCGGCCACTGCACCTTCGCCAACGAGACCGTCTCCGCCTACCCCCCGTTCGCGTGGCTGCGCTGCGGGAAGGAAGGGGTGGACGACCTGGAGGGG TACCTGCGCGAGCGCAAGATCATCAGCCGCGGCGGCGGCAAGTTCGGCGCCGACGGGAGGGTGGTCAGGATCAGCATGCTCGACACCGACGAGGCGTTCGCCATCTTCGTCGACCGCCTCGCCGCCATGAACTGATCGGTCGATCGAGCGAGCGAGCTCGCCCCAGCTAGGGCTTGATCTTGAATCTTGATCGATGTCGACGATGAGATGGTCAGTTAAGTT GCGAGGATTAAGATCAAGCTTAATTAGTTATCGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGGTTCTAGATATCGATCTGGGGTGCATGCA TGGTAATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTTAAAATTTCGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGT GGCTG ] [+] EMBL AK071481 [ CCCATGAACGTCGTCTCCCCCGCACCATACTACTCCTCGTACCCGGCGGTGACGGATTTCCTCAAGTCGGGGCTGTACAGGTGGGCCGGCGACGCCAAGATGTTCGACGGCGACACCTACGTCGAGCTCGTCTGCTCGCCGAGCAACCCGGACGGCGGCATCCGCGAGGCCGTGCTCAAGTCCGGCGACGGCGTCGCCGTCCACGACCTCGCCTACTACTGGCCGCAGTACACCCCCATCACCAGCGCCGCCGCCCATGACATCATGCTCTTCACCGTCTCCAAGTGCACCGGCCACGCCGGCACCCGCCTCGGGTGGGCGCTGGTGAAGGACAGGGCGGTGGCGCAGAAGATGAGCAAGTTCATCGAGCTCAACACCATCGGCGTCTCCAAGGACTCGCAGCTCCGCGCCGCCAAGATCCTCAAGGCCATCACCGACGGCTACGACCGCGCGCCCGCCGCCGGCGACGACGACGACGACTCGAGCCGACTGTTCCACTTCGCCCGCCGCAAGATGGTCTCTCGCTGGGCCAAGCTCCGCGCCGCCGTCGCCGCCTCCGGCATCTTCACCCTCCCCGACGAGCTCCCCGGCCACTGCACCTTCGCCAACGAGACCGTCTCCGCCTACCCCCCGTTCGCGTGGCTGCGCTGCGGGAAGGAAGGGGTGGACGACCTGAAGGGG TACCTGCGCGAGCGCAAGATCATCAGCCGCGGCGGCGGCAAGTTCGGCGCCGACGGGAGGGTGGTCAGGATCAGCATGCTCGACACCGACGAGGCGTTCGCCATCTTCGTCGACCGCCTCGCCGCCATGAACTGATCGGTCGATCGAGCGAGCGAGCTCGCCCCAGCTAGGGCTTGATCTTGAATCTTGATCGATGTCGACGATGAGATGGTCAGTTAAGTT GCGAGGATTAAGATCAAGCTTAATTAGTTATCGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGGTTCTAGATATCGATCTGGGGTGCATGCA TGGTAATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTTAAAATTTCGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGT GGCTGGTTGGATATCAATATGGATC ] [+] EMBL BI799576 [ TCCGGCATCTTCACCCTCCCCGACGAGCTCCCCGGCCACTGCACCTTCGCCAACGAGACCGTCTCCGCCTACCCCCCGTTCGCGTGGCTGCGCTGCGGGAAGGAAGGGGTGGACGACCTGGAGGGGCTACCTGCGCGAGCGCAAGATCATCAGCCGCGGCGGCGGCAAGTTCGGCGCCGACGGGAGGGTGGTCAGGATCAGCATGCTCGACACCGACGAGGCGTTCGCCATCTTCGTCGACCGCCTCGCCGCCATGAACTGATCGGTCGATCGAGCGAGCGAGCTCGCCCCAGCTAGGGCTTGATCTTGAATCTTGATCGATGTCGACGATGAGATGGTCAGTTAAGTTCGCGAGGATTAAGATCAAGCTTAATTAGTTATCGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGGTTCTAGATATCGATCTGGGGTGCATGCACTGGTAATGTGCTTTGGTTAATATTAGTCCCAAACTCTATATAATTTTGGATCGACTCTTAAAATTTCGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGTCGGCTGGTTGGATATC ATATGGATCATAATTAAGTATATATGTGTTGTGAAAAAA] consensusID : consensus_6702#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence [AGGAGGGGNAGACNNGAGGAACCCGCGGNGNGCAAAATTTCACCCGCGGCGGCGGCAAGTTCGGCNCCGACGGGAGGGTGTTCAGAATCAGCATGNTCGACACCGACGAGGCGTTCNCCATCTTTCGTCGACCNCTTCGCCGCCATGAACTGATCGATCGATCAAGCGAGCGAGCTTGCCCCAGCTAGGGCTTNATCTTGAATCTTGATCGATATCGATCGACGATGAGACGGTCAGTTAAGTTGCGAGGATTAAGATCAAGCTTAATTAGTTNTCGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGTTCTAGATATCGATCTGGGGTGAATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTTAAAATTTTGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGTGGCTGGTTGGATATCAATATGGATCATAATTAAGTAAAAAAAAAAAA] [-] EMBL AA753452 [AGGAGGGGNAGACNNGAGGAACCCGCGGNGNGCAAAATTTCACCCGCGGCGGCGGCAAGTTCGGCNCCGACGGGAGGGTGTTCAGAATCAGCATGNTCGACACCGACGAGGCGTTCNCCATCTTTCGTCGACCNCTTCGCCGCCATGAACTGATCGATCGATCAAGCGAGCGAGCTTGCCCCAGCTAGGGCTTNATCTTGAATCTTGATCGATATCGATCGACGATGAGACGGTCAGTTAAGTTGCGAGGATTAAGATCAAGCTTAATTAGTTNTCGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGTTCTAGATATCGATCTGGGGTGAATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTTAAAATTTTGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGTGGCTGGTTGGATATCAATATGGATCATAATTAAGTAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6702#0 TTCCCCTATCTATAAATAGAGAGGAGAAGGGAGAGTGAGTGTGAGTTGGTCATGGCGGCG 60 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 ATGGGCAGCAAGGATGGCGGCGGCGGCGGTGGCGGGATGGCGGCGCAGGCTGGGAGGCTC 120 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 GGGGTGGTCGCCTCCGTGGCGTTCAACCTCGCCGCGCTCGCGTTCTACCTCCGCCGGAGA 180 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 TACTTCGGCGGTGACGACGCCGCCGCGGTGAGGAAGAAGGCGGAGGCGGAGGTCGCGCCG 240 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 TCCTCCGGGAAGCCGCCGGTGACCAAGGACTCAATCATCAACCTCGACCACGGCGACCCG 300 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 ACGATGTACGAGGCGTTCTGGCGCGGCGGCGCCGGGGAGAGGGCGACGATCGTGATCCCG 360 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 GGGTGGCAGACGATGAGCTACTTCTCCGACGTGGGCAGCCTGTGCTGGTTCCTGGAGCCC 420 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 GGGTTGGAGCGGGAGGTGCGCCGCCTCCACCGCCTCGTCGGCAACGCCGTCGCCGACGGC 480 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 TACCACGTGCTCGTCGGCACCGGATCCACCCAGCTCTTCCAGGCCGCGCTCTACGCCCTC 540 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 TCGCCGCCGGGCCCCTCCGCCCCCATGAACGTCGTCTCCCCCGCACCATACTACTCCTCG 600 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 TACCCGGCGGTGACGGATTTCCTCAAGTCGGGGCTGTACAGGTGGGCCGGCGACGCCAAG 660 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 ATGTTCGACGGCGACACCTACGTCGAGCTCGTCTGCTCGCCGAGCAACCCGGACGGCGGC 720 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 ATCCGCGAGGCCGTGCTCAAGTCCGGCGACGGCGTCGCCGTCCACGACCTCGCCTACTAC 780 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 TGGCCGCAGTACACCCCCATCACCAGCGCCGCCGCCCATGACATCATGCTCTTCACCGTC 840 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 TCCAAGTGCACCGGCCACGCCGGCACCCGCCTCGGGTGGGCGCTGGTGAAGGACAGGGCG 900 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 GTGGCGCAGAAGATGAGCAAGTTCATCGAGCTCAACACCATCGGCGTCTCCAAGGACTCG 960 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 CAGCTCCGCGCCGCCAAGATCCTCAAGGCCATCACCGACGGCTACGATCGCGCGCCCGCC 1020 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 GCCGGCGACGACGACGACGACTCGAGCCGACTGTTCCACTTCGCCCGCCGCAAGATGGTC 1080 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 TCTCGCTGGGCCAAGCTCCGCGCCGCCGTCGCCGCCTCCGGCATCTTCACCCTCCCCGAC 1140 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 GAGCTCCCCGGCCACTGCACCTTCGCCAACGAGACCGTCTCCGCCTACCCCCCGTTCGCG 1200 consensus_6702#1 ------------------------------------------------------------ consensus_6702#0 TGGCTGCGCTGCGGGAAGGAAGGGGTGGACGACCTGGAGGGGTACCTGCGCGAGCGCAAG 1260 consensus_6702#1 --------------------AGGAGGGGNAGACNNGAGGA---ACCCGCG-GNGNGCAAA 36 *** * ** *** * * *** *** * * **** consensus_6702#0 ATCATCAGCCGCGGCGGCGGCAAGTTCGGCGCCGACGGGAGGGTGGTCAGGATCAGCATG 1320 consensus_6702#1 ATT-TCACCCGCGGCGGCGGCAAGTTCGGCNCCGACGGGAGGGTGTTCAGAATCAGCATG 95 ** *** ********************** ************** **** ********* consensus_6702#0 CTCGACACCGACGAGGCGTTCGCCATCTT-CGTCGACCGCCTCGCCGCCATGAACTGATC 1379 consensus_6702#1 NTCGACACCGACGAGGCGTTCNCCATCTTTCGTCGACCNCTTCGCCGCCATGAACTGATC 155 ******************** ******* ******** * ******************* consensus_6702#0 GGTCGATCGAGCGAGCGAGCTCGCCCCAGCTAGGGCTTGATCTTGAATCTTGATCGATGT 1439 consensus_6702#1 GATCGATCAAGCGAGCGAGCTTGCCCCAGCTAGGGCTTNATCTTGAATCTTGATCGATAT 215 * ****** ************ **************** ******************* * consensus_6702#0 CGA----CGATGAGATGGTCAGTTAAGTTGCGAGGATTAAGATCAAGCTTAATTAGTTAT 1495 consensus_6702#1 CGATCGACGATGAGACGGTCAGTTAAGTTGCGAGGATTAAGATCAAGCTTAATTAGTTNT 275 *** ******** ****************************************** * consensus_6702#0 CGTCGTCGTCTTTGGTTGCTTCATCAAGTTCGGTTCTAGATATCGATCTGGGGTGCATGC 1555 consensus_6702#1 CGTCGTCGTCTTTGGTTGCTTCATCAAGTTCG-TTCTAGATATCGATCTGGGGTG----- 329 ******************************** ********************** consensus_6702#0 ATGGTAATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTT 1615 consensus_6702#1 -----AATGTGCTTTGGTTAATATTAGTCCAAAACTCTATATAATTTTGGATCGACTCTT 384 ******************************************************* consensus_6702#0 AAAATTTCGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGTGGCTGGTTGGATATCA 1675 consensus_6702#1 AAAATTTTGATGTTGTGTTGTGAGACTTTAATTTGTGAGTTTGTGGCTGGTTGGATATCA 444 ******* **************************************************** consensus_6702#0 ATATGGATCATAATTAAGTATATATGTGTTGTGAAAAAA 1714 consensus_6702#1 ATATGGATCATAATTAAGTAAAAA--------AAAAAAA 475 ******************** * * ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||