These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6705#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence [CCCTTGAGCTCTCCACCCTCCTCTGTACGCATCTTCCGGCGGCGCACCAGGCGGCGTCGAGGGCGGAGTGGGAGACAGCGCCAGGGACGTGGTTCGGGCGGCGAGGGCGGTGCAGCTCCTGGCGGCGCAGTCGGCAAGGACCTAGGGGGGGGGGGGGGGGCAGCGAGCAGACCAACACCCATTTTTGTCCTTCCATTCCTCTCCAAATCAAGTTTCTGCAGCAACCGGTGCAAACTAAAGATGGCGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACATAGTGGTGGCTGGAGGACTCTCTGCTTTCGTCCTTGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGGCATGAAGAAAAAGGATGCTGGGAACTCATCCGCCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATATCCGCCTCTATACTGAACTGTGGTTTTGTACAATAATGGCTCAATACTAGGTTGTGCTTATGCTTTGACGTTAAGCTGGAATAATTTTTGACTGAATCGACTATATTAAAACCTCCCCGGAGTTGCTGGGCTGAGAGCGTTTTGGACTGGTGCTCGCACGCGGCGCTATCCATTTTTATTCACA] [+] EMBL AK062659 [CCCTTGAGCTCTCCACCCTCCTCTGTACGCATCTTCCGGCGGCGCACCAGGCGGCGTCGAGGGCGGAGTGGGAGACAGCGCCAGGGACGTGGTTCGGGCGGCGAGGGCGGTGCAGCTCCTGGCGGCGCAGTCGGCAAGGACCTAGGGGGGGGGGGGGGGGCAGCGAGCAGACCAACACCCATTTTTGTCCTTCCATTCCTCTCCAAATCAAGTTTCTGCAGCAACCGGTGCAAACTAAAGATGGCGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACATAGTGGTGGCTGGAGGACTCTCTGCTTTCGTCCTTGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGGCATGAAGAAAAAGGATGCTGGGAACTCATCCGCCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATATCCGCCTCTATACTGAACTGTGGTTTTGTACAATAATGGCTCAATACTAGGTTGTGCTTATGCTTTGACGTTAAGCTGGAATAATTTTTGACTGAATCGACTATATTAAAACCTCCCCGGAGTTGCTGGGCTGAGAGCGTTTTGGACTGGTGCTCGCACGCGGCGCTATCCATTTTTATTCACA] consensusID : consensus_6705#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 564 fasta sequence [GAGACAAGGGGGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACTTTGTGGTGGCTGGAGGACTGTCTGCTTTCGTCCTCGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGACATGAAGAAAAATGATGCTGGGAACTCATCCACCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATGTCCGCCTCTATACTGAACTGATGACACTTGGTTTTGATCCTAAGAACATGGTTTAGAATTGGCTCCATGTCCGCCTCTAGCCCTCTATACTGAACCGATGACACTTGGTTTTGTACAATAATGGCTCGATACTAGGTTTTGCTTATGCTTTGATGATAGGCTGGAATAATTTTTGACTGAATGATGGCTGCAGAGTTGGATTGCAGTTTTAATTTTTTGAAAGTTCATATAACAGTATGATGACCTGTGTAACTTGAAGGTTTCTATTTGTGTGTGGGTATGCAAAAGACAACAAAAGTGTAGCAATGTTATGGGACTATTATCAAAAAAAAAAAAA] [-] EMBL CA763547 [GAGACAAGGGGGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACTTTGTGGTGGCTGGAGGACTGTCTGCTTTCGTCCTCGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGACATGAAGAAAAATGATGCTGGGAACTCATCCACCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATGTCCGCCTCTATACTGAACTGATGACACTTGGTTTTGATCCTAAGAACATGGTTTAGAATTGGCTCCATGTCCGCCTCTAGCCCTCTATACTGAACCGATGACACTTGGTTTTGTACAATAATGGCTCGATACTAGGTTTTGCTTATGCTTTGATGATAGGCTGGAATAATTTTTGACTGAATGATGGCTGCAGAGTTGGATTGCAGTTTTAATTTTTTGAAAGTTCATATAACAGTATGATGACCTGTGTAACTTGAAGGTTTCTATTTGTGTGTGGGTATGCAAAAGACAACAAAAGTGTAGCAATGTTATGGGACTATTATCAAAAAAAAAAAAA] [-] EMBL CA763548 [GAGACAAGGGGGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACTTTGTGGTGGCTGGAGGACTGTCTGCTTTCGTCCTCGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGACATGAAGAAAAATGATGCTGGGAACTCATCCACCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATGTCCGCCTCTATACTGAACTGATGACACTTGGTTTTGATCCTAAGAACATGGTTTAGAATTGGCTCCATGTCCGCCTCTAGCCCTCTATACTGAACCGATGACACTTGGTTTTGTACAATAATGGCTCGATACTAGGTTTTGCTTATGCTTTGATGATAGGCTGGAATAATTTTTGACTGAATGATGGCTGCAGAGTTGGATTGCAGTTTTAATTTTTTGAAAGTTCATATAACAGTATGATGACCTGTGTAACTTGAAGGTTTCTATTTGTGTGTGGGTATGCAAAAGACAACAAAAGTGTAGCAATGTTATGGGACTATTATCAAAAAAAAAAAAA] [-] EMBL CA763546 [GAGACAAGGGGGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACTTTGTGGTGGCTGGAGGACTGTCTGCTTTCGTCCTCGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAGCTGCAGGTCGCCATTGATAAGTTTGAAGACATGAAGAAAAATGATGCTGGGAACTCATCCACCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATGTCCGCCTCTATACTGAACTGATGACACTTGGTTTTGATCCTAAGAACATGGTTTAGAATTGGCTCCATGTCCGCCTCTAGCCCTCTATACTGAACCGATGACACTTGGTTTTGTACAATAATGGCTCGATACTAGGTTTTGCTTATGCTTTGATGATAGGCTGGAATAATTTTTGACTGAATGATGGCTGCAGAGTTGGATTGCAGTTTTAATTTTTTGAAAGTTCATATAACAGTATGATGACCTGTGTAACTTGAAGGTTTCTATTTGTGTGTGGGTATGCAAAAGACAACAAAAGTGTAGCAATGTTATGGGACTATTATCAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6705#0 CCCTTGAGCTCTCCACCCTCCTCTGTACGCATCTTCCGGCGGCGCACCAGGCGGCGTCGA 60 consensus_6705#1 ------------------------------------------------------------ consensus_6705#0 GGGCGGAGTGGGAGACAGCGCCAGGGACGTGGTTCGGGCGGCGAGGGCGGTGCAGCTCCT 120 consensus_6705#1 ------------------------------------------------------------ consensus_6705#0 GGCGGCGCAGTCGGCAAGGACCTAGGGGGGGGGGGGGGGGCAGCGAGCAGACCAACACCC 180 consensus_6705#1 ------------------------------------------------------------ consensus_6705#0 ATTTTTGTCCTTCCATTCCTCTCCAAATCAAGTTTCTGCAGCAACCGGTGCAAACTAAAG 240 consensus_6705#1 ------------------------------------------------------GAGACA 6 * consensus_6705#0 ATGGCGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACATAGTGGTGGCTGGAGGACTC 300 consensus_6705#1 AGGGGGGGATTCGGCAGCCTGGCACCCAAGACCAAGAACTTTGTGGTGGCTGGAGGACTG 66 * ** ********************************** * ***************** consensus_6705#0 TCTGCTTTCGTCCTTGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAG 360 consensus_6705#1 TCTGCTTTCGTCCTCGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATGAG 126 ************** ********************************************* consensus_6705#0 CTGCAGGTCGCCATTGATAAGTTTGAAGGCATGAAGAAAAAGGATGCTGGGAACTCATCC 420 consensus_6705#1 CTGCAGGTCGCCATTGATAAGTTTGAAGACATGAAGAAAAATGATGCTGGGAACTCATCC 186 **************************** ************ ****************** consensus_6705#0 GCCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATATCCGCCTCTATACTGAACT 480 consensus_6705#1 ACCGCGGGATCCTAAGAACAGGGTTTAGAATTGGCTCCATGTCCGCCTCTATACTGAACT 246 *************************************** ******************* consensus_6705#0 G--------TGGTTTTG----TACAATAATGGCTCAATACTAGGTT-------GTGCTTA 521 consensus_6705#1 GATGACACTTGGTTTTGATCCTAAGAACATGGTTTAGAATTGGCTCCATGTCCGCCTCTA 306 * ******** ** * **** * * * * * * * ** consensus_6705#0 TGCTTTGACGTTAAGCTGGAA-----TAATTTTTGACTGAATCGACT--ATATTAAAACC 574 consensus_6705#1 GCCCTCTATACTGAACCGATGACACTTGGTTTTGTACAATAATGGCTCGATACTAGGTTT 366 * * * * * * * * **** ** * * ** *** ** consensus_6705#0 TCCCCGGAGTT----GCTGGGCTGAGAGCGTTTTGGACTGGTGCTCGCACGCGGCGCTA- 629 consensus_6705#1 TGCTTATGCTTTGATGATAGGCTGGAATAATTTTTGACTGAATGATGGCTGCAGAGTTGG 426 * * ** * * ***** * **** ***** * ** * * * consensus_6705#0 --TCCATTTTTATTCACA------------------------------------------ 645 consensus_6705#1 ATTGCAGTTTTAATTTTTTGAAAGTTCATATAACAGTATGATGACCTGTGTAACTTGAAG 486 * ** ***** * consensus_6705#0 ------------------------------------------------------------ consensus_6705#1 GTTTCTATTTGTGTGTGGGTATGCAAAAGACAACAAAAGTGTAGCAATGTTATGGGACTA 546 consensus_6705#0 ------------------ consensus_6705#1 TTATCAAAAAAAAAAAAA 564 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||