These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6707#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 622 fasta sequence [CCCCTCTTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAGGTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAGAGGAACAGAC-GGAGAGGCATACAGAGAGGCTAC-TGGCACGGCACCAGTGCACGAGGGCCGTAACGACGATGCTGTTGCGGCTGCGGAGGAAGCAGCGTTCTGCAAAGCCTGCGCACGGTTTGGTTTCGGCCTCTACCTATACCACCAGGACGAGATCCCATAGAGATGAGGATGGCTTTGAGGCTCATTTCTGCAGAGGATCTGGTGGTCACAAAGTTTGTAGGAAAACCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGCATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAG-TTGTTAAATG-ATTTGAGTCCATGTCGTCCAGCATAG-TTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATAGTTGCTGTGTTTATACCCGTTTTTTGTAT-TTGA-GTCCACGGATGGATATTTTTGTTGTCATGATAATGAAGTTGCTTCGACCTACCTGAAGTTTTTGACT] [+] EMBL CB685144 [CCCCTCTTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAGGTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAGAGGAACAGAC GGAGAGGCATACAGAGAGGCTAC TGGCACGGCACCAGTGCACGAGGGCCGTAACGACGATGCTGTTGCGGCTGCGGAGGAAGCAGCGTTCTGCAAAGCCTGCGCACGGTTTGGTTTCGGCCTCTACCTATACCACCAGGACGAGATCCCATAGAGATGAGGATGGCTTTGAGGCTCATTTCTGCAGAGGATCTGGTGGTCACAAAGTTTGTAGGAAAACCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGCATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAG TTGTTAAATG TATTGAGTCCATGTCGTCCAGCATAG TTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATAGTTGCTGTGTTTATACCCGTTTTTTGTAT TTGA GTCCACGGATGGATATTTTTGTTGTCATGATAATGAAGTTGCTTCG ] [+] EMBL BI118721 [ ATAGAATGCTGAGCTTTTATGCACCATGTTGGTGTGGAGAACTTCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAGAGGAACAGAC GGAGAGGCATACAGAGAGGCTAC TGGCACGGCACCAGTGCACGAGGGCCGTAACGACAATGCTGTTGCGGCTGCGGAGGAAGCAGCGTTCTGCAAAGCCTGCGCACGGTTTGGTTTCGGCCTCTACCTATACCACCAGGACGAGATCCCATAGAGATGAGGATGGCTTTGAGGCTCATTTCTGCAGAGGATCTGGTGGTCACAAAGTTTGTAGGAAAACCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGCATATTTACACAAGAAAAGCTTTGATTTGTTGCTGCCTCAGTTTGTTAAATG ATTTGAGTCCATGTCGTCCA CATAGTTTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATAGTTGCTGTGTTTATACCCGGTTTTTGTATATCGAGGGCCACGAATGGATATTATTGCTGGCATGATAACGAAGTTGTTTCGACCTACCTGAAGTTTTTGACT] [+] EMBL CA305699 [ TGCTGAGCTTTTATGCACCAGGTTGGTGTGGAGAAGTTCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAGAGGAACAGACNGGAGAGGCATACAGAGAGGCTACATGGCACGGCACCAGTGCACGAGGGCCGTAACGACGATGCTGTTGCGGCTGCGGAGGAAGCAGCGTTCTGCAAAGCCTGCGCACGGTTTGGTTTCGGCCTCTACCTATACCACCAGGACGAGATCCCATAGAGATGAGGATGGCTTTGAGGCTCATTTCTGCAGAGGATCTGGTGGTCACAAAGTTTGTAGGAAAACCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGCATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAG NTGTTAAATGTATTg ] consensusID : consensus_6707#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [ANNAGGGGGGGGGGGNATTTCCNTTTTTTTTTTTNANAAGGGAACTGANCCCGGGTTTTGGGGGTTTTGGNGGANAGGGGGGGGGCAAACNANGNGGNTAATNGCCCGGNNCCATGCCNGGGGGCCNNAAACGAAGAATCTNTTTCCGGNTGCGGNNGGAACCAGGTTTTTGCCAAACCCTGNGCACGGGTTTGGGTTTNGGCCTTTTACCCTATACCCAACCAGGGACGGAGANCCCCATTAGAGGTGGGGNTGGCTTTGGGGNTTCAATTTCTGCAGAGGATNTTGGTGGTCAACAAAGTTGTAGGAAAACCCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGCATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAGTTGTTAAATGTATTGAGTCCATGTCGTCCAGCATAGTTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATAGTTGCTGTGTTTATACCCGTTTTTTGTATTTGAGTCCACGGATGGATATTTTTGTTGTCATGATAATGAAGTTGCTTCGACAATTAAAAAAAA] [+] EMBL AA753646 [ANNAGGGGGGGGGGGNATTTCCNTTTTTTTTTTTNANAAGGGAACTGANCCCGGGTTTTGGGGGTTTTGGNGGANAGGGGGGGGGCAAACNANGNGGNTAATNGCCCGGNNCCATGCCNGGGGGCCNNAAACGAAGAATCTNTTTCCGGNTGCGGNNGGAACCAGGTTTTTGCCAAACCCTGNGCACGGGTTTGGGTTTNGGCCTTTTACCCTATACCCAACCAGGGACGGAGANCCCCATTAGAGGTGGGGNTGGCTTTGGGGNTTCAATTTCTGCAGAGGATNTTGGTGGTCAACAAAGTTGTAGGAAAACCCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGCATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAGTTGTTAAATGTATTGAGTCCATGTCGTCCAGCATAGTTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATAGTTGCTGTGTTTATACCCGTTTTTTGTATTTGAGTCCACGGATGGATATTTTTGTTGTCATGATAATGAAGTTGCTTCGACAATTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6707#0 CCCCTCTTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAGGTTGGTGTGGAGAAGT 60 consensus_6707#1 ---------------------------------------ANNAGG--GGGGGGGGGNATT 19 * *** ** * ** * * * consensus_6707#0 TCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAG 120 consensus_6707#1 TC----CNTTTTTTTTTTTNANAAGGGAACTGANCCCGGGTTTTG----GGGGTTTTGGN 71 ** ** *** ** * * ** ******* *** * *** * * ** ** consensus_6707#0 AGGAACAGACGGAGAGGCATACAGAGAGGCTACTGGCACGGCACCAGTGCACGAGGGCCG 180 consensus_6707#1 GGANAGG---GGGGGGGCAAACNANGNGGNTAATNGCCCGGNNCCA-TGCCNGGGGGCCN 127 * * ** * **** ** * ** ** * ** *** *** *** * ***** consensus_6707#0 TAA-CGACGATGCTGTTGC-GGCTGCGGAGGAAGCAGCGTTCTG--CAAAGCCTGCGCAC 236 consensus_6707#1 NAAACGAAGAATCTNTTTCCGGNTGCGGNNGGAACCAGGTTTTTGCCAAACCCTGNGCAC 187 ** *** ** ** ** * ** ***** * * * *** * **** **** **** consensus_6707#0 GGTTT--GGTTTCGGCCTCTA--CCTATACC--ACCAGGAC--GAGATCCCA--TAGAGA 286 consensus_6707#1 GGGTTTGGGTTTNGGCCTTTTACCCTATACCCAACCAGGGACGGAGANCCCCATTAGAGG 247 ** ** ***** ***** * ******** ****** **** *** ***** consensus_6707#0 TGAGGATGGCTTTGAGGCTC--ATTTCTGCAGAGGATCT-GGTGGTCACAAAGTTTGTAG 343 consensus_6707#1 TGGGGNTGGCTTTGGGGNTTCAATTTCTGCAGAGGATNTTGGTGGTCAACAAAGTTGTAG 307 ** ** ******** ** * *************** * ******** ** ****** consensus_6707#0 GAAAACC-GCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGC 402 consensus_6707#1 GAAAACCCGCGATGAATTTTCGCACCTTGCTGGTAGCACAAGGCGAGCTTTTGCTGATGC 367 ******* **************************************************** consensus_6707#0 ATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAGTTGTTAAATGATTTGAGTCC 462 consensus_6707#1 ATATTTACACAAGAAAAGCTTTAATTTGTTGCTGCCTCAGTTGTTAAATGTATTGAGTCC 427 ************************************************** ******** consensus_6707#0 ATGTCGTCCAGCATAGTTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATA 522 consensus_6707#1 ATGTCGTCCAGCATAGTTTGTCAGATAGGAAAAGAAACATTAAAATCGTGCCGTTGCATA 487 ************************************************************ consensus_6707#0 GTTGCTGTGTTTATACCCGTTTTTTGTATTTGAGTCCACGGATGGATATTTTTGTTGTCA 582 consensus_6707#1 GTTGCTGTGTTTATACCCGTTTTTTGTATTTGAGTCCACGGATGGATATTTTTGTTGTCA 547 ************************************************************ consensus_6707#0 TGATAATGAAGTTGCTTCGACCTACCTGAAGTTTTTGACT 622 consensus_6707#1 TGATAATGAAGTTGCTTCGACAATTAAAAAAAA------- 580 ********************* ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||