cluster # 6708

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Oryza sativa
cluster # 6708 cluster # 6708 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6708#0 length = 682 sequences # 3

consensus_6708#1 length = 465 sequences # 1

consensusID : consensus_6708#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 682
fasta sequence

                              [GGTAAGGGAAGNAGAGAAGAATCTCTGAAACAGAGAAGACGAAGTGGACTGCTACGGTGGCTTCCGTTTGTGCATGATGGAGGTACTGCTGCTTTGTATGTTACTTGGAGTTGCATTTGCAAACAGGAGATCGTGTCGATTCGGAGCACAAGAGGAAGATACAACATCAAGGTAAGCTGCGAAGATCCGAAAGCTAAGCAACGAAGAAGATACAACACCAAGACGGTGAAATCTGGAGAATGGAAGAATCGAAGGCGTATTCCGGTGTTTTAATGAAAGAAGCAGCAAAAACACAAGAGATAAGTGCATATGATATTGAATGATAGTATTGAACTTGTTGAAGTCTGAAGAAGGAAGAATTGATGGTATACAATGGTGTATGAATGGAAGAAGCAGCAAAAACACAAGATAAGTGCATATGATATGTTGTACAGTAAGTTTTGAGATGAAAGCTGAGGGTGCTATTATCCAACTCATTATGTTCATATAGTCATATGATCTGCCTCAGTGATAGGTATTTGTGGTACANANGCAAATGACAACTCCAGATTTATATCATACAGCTGAAACTGCACCACCAATTTTCTNNNNNCGTTTNNNCATTCGTCAGCTCTGCTTTGAGGTACTAGCTGAAGCATTACCATTCCATCTGAAAGTACCATAATTGCATGGGTTTTTTTTC]

[+] EMBL CF196540             [GGTAAGGGAAGNAGAGAAGAATCTCTGAAACAGAGAAGACGAAGTGGACTGCTACGGTGGCTTCCGTTTGTGCATGATGGAGGTACTGCTGCTTTGTATGTTACTTGGAGTTGCATTTGCAAACAGGAGATCGTGTCGATTCGGAGCACAAGAGGAAGATACAACATCAAGGTAAGCTGCGAAGATCCGAAAGCTAAGCAACGAAGAAGATACAACACCAAGACGGTGAAATCTGGAGAATGGAAGAATCGAAGGCGTATTCCGGTGTTTTAATGAAAGAAGCAGCAAAAACACAAGAGATAAGTGCATATGATATTGAATGATAGTATTGAACTTGTTGAAGTCTGAAGAAGGAAGAATTGATGGTATACAATGGTGTATGAATGGAAGAAGCAGCAAAAACACAAGATAAGTGCATATGATATGTTGTACAGTAAGTTTTGAGATGAAAGCTGAGGGTGCTATTATCCAACTCATTATGTTCATATAGTCATATGATCTGCCTCAGTGATAGGTATTTGTGGTACANANGCAAATGACAACTCCAGATTTATATCATACAGCTGAAACTGCACCACCAATTTTCTNNNNNCGTTTNNNCATTCGTC                                                                          ]
[+] EMBL CB000564             [                                          AGTGGACTGCTACGGTGGCTTCCGTTTGTGCATGATGGAGGCACTGCTGCTTTGTATGTTACTTGGAGTTGCATTTGCAAACAGGAGATCGTGTCGATTCGGAGCACAAGAGGAAGATACAACATCAAGGTAAGCTGCGAAGATCCGAAAGCTAAGCAACGAAGAAGATACAACACCAAGACGGTGAAATCTGGAGAATGGAAGAATCGAAGGCGTATTCCGGTGTTTTAATGAAAGAAGCAGCAAAAACACAAGAGATAAGTGCATATGATATTGAATGATAGTATTGAACTTGTTGAAGTCTGAAGAAGGAAGAATTGATGGTATACAATGGTGTATGAATGGAAGAAGCAGCAAAAACACAAGATAAGTGCATATGATATGTTGTACAGTAAGTTTTGAGATGAAAGCTGAGGGTGCTATTATCCAACTCATTATGTTCATATAGTCATATGATCTGCCTCAGTGATAGGTATTTGTGGTACATATGCAAATGACAACTCCAGATTTATATCATACAGCTGAAACTGCACCACCAATTTTCTTTCAACGTTTAGCCATTCGTCAGCTCTGCTTTGAGGTACTAGCTGAAGCATTACCATTCCATCTGAAAGTACCATAATTGCATGGGTTTTTTTTC]
[+] EMBL CA999191             [                                                                                                                                                                         AGGTAAGCTGCGAAGATCCGAAAGCTAAGCAACGAAGAAGATACAACACCAAGACGGTGAAATCTGGAGAATGGAAGAATCGAAGGCGTATTCCGGTGTTTTAATGAAAGAAGCAGCAAAAACACAAGAGATAAGTGCATATGATATTGAATGATAGTATTGAACTTGTTGAAGTCTGAAGAAGGAAGAATTGATGGTATACAATGGTGTATGAATGGAAGAAGCAGCAAAAACACAAGATAAGTGCATATGATATGTTGTACAGTAAGTTTTGAGATGAAAGCTGAGGGTGCTATTATCCAACTCATTATGTTCATATAGTCAT                                                                                                                                                                                            ]




>consensus_6708#0
GGTAAGGGAAGNAGAGAAGAATCTCTGAAACAGAGAAGACGAAGTGGACTGCTACGGTGG
CTTCCGTTTGTGCATGATGGAGGTACTGCTGCTTTGTATGTTACTTGGAGTTGCATTTGC
AAACAGGAGATCGTGTCGATTCGGAGCACAAGAGGAAGATACAACATCAAGGTAAGCTGC
GAAGATCCGAAAGCTAAGCAACGAAGAAGATACAACACCAAGACGGTGAAATCTGGAGAA
TGGAAGAATCGAAGGCGTATTCCGGTGTTTTAATGAAAGAAGCAGCAAAAACACAAGAGA
TAAGTGCATATGATATTGAATGATAGTATTGAACTTGTTGAAGTCTGAAGAAGGAAGAAT
TGATGGTATACAATGGTGTATGAATGGAAGAAGCAGCAAAAACACAAGATAAGTGCATAT
GATATGTTGTACAGTAAGTTTTGAGATGAAAGCTGAGGGTGCTATTATCCAACTCATTAT
GTTCATATAGTCATATGATCTGCCTCAGTGATAGGTATTTGTGGTACANANGCAAATGAC
AACTCCAGATTTATATCATACAGCTGAAACTGCACCACCAATTTTCTNNNNNCGTTTNNN
CATTCGTCAGCTCTGCTTTGAGGTACTAGCTGAAGCATTACCATTCCATCTGAAAGTACC
ATAATTGCATGGGTTTTTTTTC

consensusID : consensus_6708#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence

                              [ATACAACACCAAGACGGTGAAATCTGGAGAATGGAAGAATCGAAGGCGTATTCCGGTGTTTTAATGAAAGAAGCAGCAAAAACACAAGAGATAAGTGCATATGATATTGAATGATAGTATTGAACTTGTTGAAGTCTGAAGAAGGAAGAATTGATGGTATACAATGGTGTATGAATGGAAGAAGCAGCAAAAACACAAGATAAGTGCATATGATATGTTGTACAGTAAGTTTTGAGATGAAAGCTGAGGGTGCTATTATCCAACTCATTATGTTCATATAGTCATATGATCTGCCTCAGTGATAGGTATTTGTGGTACATATGCAAATGACAACTCCAGATTTATATCATACAGCTGAAACTGCACCACCAANNNNTNTNNCACGTTTAGCCATTCGTCAGCTCTGCTTNNNNNNNCTAGCTGAAGCATTACCATTCAATCTGNNNNNNNNNNNANNGCATGNNN]

[+] EMBL CF196648             [ATACAACACCAAGACGGTGAAATCTGGAGAATGGAAGAATCGAAGGCGTATTCCGGTGTTTTAATGAAAGAAGCAGCAAAAACACAAGAGATAAGTGCATATGATATTGAATGATAGTATTGAACTTGTTGAAGTCTGAAGAAGGAAGAATTGATGGTATACAATGGTGTATGAATGGAAGAAGCAGCAAAAACACAAGATAAGTGCATATGATATGTTGTACAGTAAGTTTTGAGATGAAAGCTGAGGGTGCTATTATCCAACTCATTATGTTCATATAGTCATATGATCTGCCTCAGTGATAGGTATTTGTGGTACATATGCAAATGACAACTCCAGATTTATATCATACAGCTGAAACTGCACCACCAANNNNTNTNNCACGTTTAGCCATTCGTCAGCTCTGCTTNNNNNNNCTAGCTGAAGCATTACCATTCAATCTGNNNNNNNNNNNANNGCATGNNN]




>consensus_6708#1
ATACAACACCAAGACGGTGAAATCTGGAGAATGGAAGAATCGAAGGCGTATTCCGGTGTT
TTAATGAAAGAAGCAGCAAAAACACAAGAGATAAGTGCATATGATATTGAATGATAGTAT
TGAACTTGTTGAAGTCTGAAGAAGGAAGAATTGATGGTATACAATGGTGTATGAATGGAA
GAAGCAGCAAAAACACAAGATAAGTGCATATGATATGTTGTACAGTAAGTTTTGAGATGA
AAGCTGAGGGTGCTATTATCCAACTCATTATGTTCATATAGTCATATGATCTGCCTCAGT
GATAGGTATTTGTGGTACATATGCAAATGACAACTCCAGATTTATATCATACAGCTGAAA
CTGCACCACCAANNNNTNTNNCACGTTTAGCCATTCGTCAGCTCTGCTTNNNNNNNCTAG
CTGAAGCATTACCATTCAATCTGNNNNNNNNNNNANNGCATGNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6708#0      GGTAAGGGAAGNAGAGAAGAATCTCTGAAACAGAGAAGACGAAGTGGACTGCTACGGTGG 60
consensus_6708#1      ------------------------------------------------------------
                                                                                  

consensus_6708#0      CTTCCGTTTGTGCATGATGGAGGTACTGCTGCTTTGTATGTTACTTGGAGTTGCATTTGC 120
consensus_6708#1      ------------------------------------------------------------
                                                                                  

consensus_6708#0      AAACAGGAGATCGTGTCGATTCGGAGCACAAGAGGAAGATACAACATCAAGGTAAGCTGC 180
consensus_6708#1      ------------------------------------------------------------
                                                                                  

consensus_6708#0      GAAGATCCGAAAGCTAAGCAACGAAGAAGATACAACACCAAGACGGTGAAATCTGGAGAA 240
consensus_6708#1      -----------------------------ATACAACACCAAGACGGTGAAATCTGGAGAA 31
                                                   *******************************

consensus_6708#0      TGGAAGAATCGAAGGCGTATTCCGGTGTTTTAATGAAAGAAGCAGCAAAAACACAAGAGA 300
consensus_6708#1      TGGAAGAATCGAAGGCGTATTCCGGTGTTTTAATGAAAGAAGCAGCAAAAACACAAGAGA 91
                      ************************************************************

consensus_6708#0      TAAGTGCATATGATATTGAATGATAGTATTGAACTTGTTGAAGTCTGAAGAAGGAAGAAT 360
consensus_6708#1      TAAGTGCATATGATATTGAATGATAGTATTGAACTTGTTGAAGTCTGAAGAAGGAAGAAT 151
                      ************************************************************

consensus_6708#0      TGATGGTATACAATGGTGTATGAATGGAAGAAGCAGCAAAAACACAAGATAAGTGCATAT 420
consensus_6708#1      TGATGGTATACAATGGTGTATGAATGGAAGAAGCAGCAAAAACACAAGATAAGTGCATAT 211
                      ************************************************************

consensus_6708#0      GATATGTTGTACAGTAAGTTTTGAGATGAAAGCTGAGGGTGCTATTATCCAACTCATTAT 480
consensus_6708#1      GATATGTTGTACAGTAAGTTTTGAGATGAAAGCTGAGGGTGCTATTATCCAACTCATTAT 271
                      ************************************************************

consensus_6708#0      GTTCATATAGTCATATGATCTGCCTCAGTGATAGGTATTTGTGGTACANANGCAAATGAC 540
consensus_6708#1      GTTCATATAGTCATATGATCTGCCTCAGTGATAGGTATTTGTGGTACATATGCAAATGAC 331
                      ************************************************ * *********

consensus_6708#0      AACTCCAGATTTATATCATACAGCTGAAACTGCACCACCAATTTTCTNNNNNCGTTTNNN 600
consensus_6708#1      AACTCCAGATTTATATCATACAGCTGAAACTGCACCACCAANNNNTNTNNCACGTTTAGC 391
                      *****************************************       **  *****   

consensus_6708#0      CATTCGTCAGCTCTGCTTTGAGGTACTAGCTGAAGCATTACCATTCCATCTGAAAGTACC 660
consensus_6708#1      CATTCGTCAGCTCTGCTTNNNNNNNCTAGCTGAAGCATTACCATTCAATCTGNNNNNNNN 451
                      ******************       ********************* *****        

consensus_6708#0      ATAATTGCATGGGTTTTTTTTC 682
consensus_6708#1      NNNANNGCATGNNN-------- 465
                         *  *****