cluster # 6713

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Oryza sativa
cluster # 6713 cluster # 6713 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6713#0 length = 694 sequences # 1
consensus_6713#1 length = 655 sequences # 1

consensus_6713#2 length = 634 sequences # 1
consensus_6713#3 length = 126 sequences # 1

consensusID : consensus_6713#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [GTTTCATTGTATAATCGTGCCACATGCTAGAAAATATTANCCTGTCCGTGNATTGCCAANCCCTAAAGGANTCGAACCCAATTTATACATCNCCCAGGCCACTTTATTAAAATATGTACCCTTAATTACTGAAATCTCTTTATCCCAATATAGTATCATGACGCCATTTTGATTTTCACGTACATTGGAAGAGTTGTTTGTGGATTGTCACTTGCTCTGAGCTGATTTACTGTGTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATTTCAATGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCCTTTGTACTTCAATTGCATTTGCCAAGGTTTGTGCTTTGCTTCGATTCAAATCACTGGACATGCTGTCTGGTCATTTGCAAGGTTTGTCTTTCTTCGATTCAAATGCACTGGACATCTGTCTGGTGCAAAATGGAAGTTCACCATGGTTCNCTTCTTTCNCTTCGTTAGTGGCTTGTAATTGGTTGTAACATATTGCAGAAACACATTGTTGGTACCTTGTGCTAAGTGAGAAACTATATTTTTGTTGTACCTTGGTGCGGTCAGCACGATTGCTGGTCTGTATCTGATATGCCACTTATGTTTTTTAACCAACTAAAAAAACTGTTTTTAATAATAAAAAA]

[+] EMBL BM038188             [GTTTCATTGTATAATCGTGCCACATGCTAGAAAATATTANCCTGTCCGTGNATTGCCAANCCCTAAAGGANTCGAACCCAATTTATACATCNCCCAGGCCACTTTATTAAAATATGTACCCTTAATTACTGAAATCTCTTTATCCCAATATAGTATCATGACGCCATTTTGATTTTCACGTACATTGGAAGAGTTGTTTGTGGATTGTCACTTGCTCTGAGCTGATTTACTGTGTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATTTCAATGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCCTTTGTACTTCAATTGCATTTGCCAAGGTTTGTGCTTTGCTTCGATTCAAATCACTGGACATGCTGTCTGGTCATTTGCAAGGTTTGTCTTTCTTCGATTCAAATGCACTGGACATCTGTCTGGTGCAAAATGGAAGTTCACCATGGTTCNCTTCTTTCNCTTCGTTAGTGGCTTGTAATTGGTTGTAACATATTGCAGAAACACATTGTTGGTACCTTGTGCTAAGTGAGAAACTATATTTTTGTTGTACCTTGGTGCGGTCAGCACGATTGCTGGTCTGTATCTGATATGCCACTTATGTTTTTTAACCAACTAAAAAAACTGTTTTTAATAATAAAAAA]




>consensus_6713#0
GTTTCATTGTATAATCGTGCCACATGCTAGAAAATATTANCCTGTCCGTGNATTGCCAAN
CCCTAAAGGANTCGAACCCAATTTATACATCNCCCAGGCCACTTTATTAAAATATGTACC
CTTAATTACTGAAATCTCTTTATCCCAATATAGTATCATGACGCCATTTTGATTTTCACG
TACATTGGAAGAGTTGTTTGTGGATTGTCACTTGCTCTGAGCTGATTTACTGTGTTGGTA
CATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATTTCAATGT
TGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCCTTTGTAC
TTCAATTGCATTTGCCAAGGTTTGTGCTTTGCTTCGATTCAAATCACTGGACATGCTGTC
TGGTCATTTGCAAGGTTTGTCTTTCTTCGATTCAAATGCACTGGACATCTGTCTGGTGCA
AAATGGAAGTTCACCATGGTTCNCTTCTTTCNCTTCGTTAGTGGCTTGTAATTGGTTGTA
ACATATTGCAGAAACACATTGTTGGTACCTTGTGCTAAGTGAGAAACTATATTTTTGTTG
TACCTTGGTGCGGTCAGCACGATTGCTGGTCTGTATCTGATATGCCACTTATGTTTTTTA
ACCAACTAAAAAAACTGTTTTTAATAATAAAAAA

consensusID : consensus_6713#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [TTTTGTGCTGAAAAGGTTGATTCTACAGATGGTGGCCATGAAGAAGATTCAGATTCGACCCCACTGAAATTGGTGACCAATAAGGAATCTACTGTTGCAGGAAATGGAGCAGATATTGACAAACAGAACTATATTGACAAACAGAACTATCCTACCAGTAATATGTCACGTGCAATGGTTTCCCCTGCTTTGACTGAGCCATGCAGCGCTGGGAATGGTGTGGAGCCCTCTTGTGCCTGACGACACGTACATTGGAAGAGTTGTTTGTGGATTGTCATTGCTCTGAGCTGATTTACTGTGTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATTTCAATGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCCTTTGTACTTCAATTGCAATTTGCAAGGTTTGTCTTTCTTCGATTCAAATCACTGGACATCTGTCTGGTCAATTTGCAGGTTTGTCTTTCTTCGATTCAAATCACTGGACATCTGTCTGGTCAAATGAAGTTCACCATGTTGTTCTTTGTTGTTAGTGCTTGTAATTGTTGTAACATATTCAGAAACACATTGTTGTACCTTGTGCTAAGTGAGAAACTATATTTTTGTTGTAAAAA]

[+] EMBL BQ907282             [TTTTGTGCTGAAAAGGTTGATTCTACAGATGGTGGCCATGAAGAAGATTCAGATTCGACCCCACTGAAATTGGTGACCAATAAGGAATCTACTGTTGCAGGAAATGGAGCAGATATTGACAAACAGAACTATATTGACAAACAGAACTATCCTACCAGTAATATGTCACGTGCAATGGTTTCCCCTGCTTTGACTGAGCCATGCAGCGCTGGGAATGGTGTGGAGCCCTCTTGTGCCTGACGACACGTACATTGGAAGAGTTGTTTGTGGATTGTCATTGCTCTGAGCTGATTTACTGTGTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATTTCAATGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCCTTTGTACTTCAATTGCAATTTGCAAGGTTTGTCTTTCTTCGATTCAAATCACTGGACATCTGTCTGGTCAATTTGCAGGTTTGTCTTTCTTCGATTCAAATCACTGGACATCTGTCTGGTCAAATGAAGTTCACCATGTTGTTCTTTGTTGTTAGTGCTTGTAATTGTTGTAACATATTCAGAAACACATTGTTGTACCTTGTGCTAAGTGAGAAACTATATTTTTGTTGTAAAAA]




>consensus_6713#1
TTTTGTGCTGAAAAGGTTGATTCTACAGATGGTGGCCATGAAGAAGATTCAGATTCGACC
CCACTGAAATTGGTGACCAATAAGGAATCTACTGTTGCAGGAAATGGAGCAGATATTGAC
AAACAGAACTATATTGACAAACAGAACTATCCTACCAGTAATATGTCACGTGCAATGGTT
TCCCCTGCTTTGACTGAGCCATGCAGCGCTGGGAATGGTGTGGAGCCCTCTTGTGCCTGA
CGACACGTACATTGGAAGAGTTGTTTGTGGATTGTCATTGCTCTGAGCTGATTTACTGTG
TTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATTT
CAATGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCCT
TTGTACTTCAATTGCAATTTGCAAGGTTTGTCTTTCTTCGATTCAAATCACTGGACATCT
GTCTGGTCAATTTGCAGGTTTGTCTTTCTTCGATTCAAATCACTGGACATCTGTCTGGTC
AAATGAAGTTCACCATGTTGTTCTTTGTTGTTAGTGCTTGTAATTGTTGTAACATATTCA
GAAACACATTGTTGTACCTTGTGCTAAGTGAGAAACTATATTTTTGTTGTAAAAA

consensusID : consensus_6713#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [GTGTGGACCTCTTGGCCTGACGACACGTGACTATAAAAATCAGGGTTTTGTGGTGAATACAACGGTTTAGAAAACATATTGGAGGAGTGGTTTTCAGTGCTCTTACTCTCTAACTGATCAACTGTGAAATTGGAAGTACACTTGGAAGAGTTGTTTGTGGATTGTCATTGCTCTGAGCTGATTTACTGTGTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATTTCAATGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCCTTTGTACTTCAATTGCAATTTGCAAGGTTTGTCTTTCTTCGATTCAAATCACTGGACATCTGTCTGGTCAATTTGCCAAGGTTTGTCTTTCTTCGATTCAAATCACTGGACATCTGTCTGGTCAAAATGAAGTTCACCATGTTGTTCTCTTGTTGCTAGTGCTTGTAATTGTTGTAACATATTCAGAAACACATTGTTGTACCTTGTGCTAAGTGAGAAACTATATTTTTGTTGTACCTTGGTGCGGTGCAGCACGATTGCTGGTCTGTATCTGATATGCCACTTATGTTTTTTAATTCATCCAAAAACTGTTTTTAATAAAAAA]

[+] EMBL BM419216             [GTGTGGACCTCTTGGCCTGACGACACGTGACTATAAAAATCAGGGTTTTGTGGTGAATACAACGGTTTAGAAAACATATTGGAGGAGTGGTTTTCAGTGCTCTTACTCTCTAACTGATCAACTGTGAAATTGGAAGTACACTTGGAAGAGTTGTTTGTGGATTGTCATTGCTCTGAGCTGATTTACTGTGTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATTTCAATGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCCTTTGTACTTCAATTGCAATTTGCAAGGTTTGTCTTTCTTCGATTCAAATCACTGGACATCTGTCTGGTCAATTTGCCAAGGTTTGTCTTTCTTCGATTCAAATCACTGGACATCTGTCTGGTCAAAATGAAGTTCACCATGTTGTTCTCTTGTTGCTAGTGCTTGTAATTGTTGTAACATATTCAGAAACACATTGTTGTACCTTGTGCTAAGTGAGAAACTATATTTTTGTTGTACCTTGGTGCGGTGCAGCACGATTGCTGGTCTGTATCTGATATGCCACTTATGTTTTTTAATTCATCCAAAAACTGTTTTTAATAAAAAA]




>consensus_6713#2
GTGTGGACCTCTTGGCCTGACGACACGTGACTATAAAAATCAGGGTTTTGTGGTGAATAC
AACGGTTTAGAAAACATATTGGAGGAGTGGTTTTCAGTGCTCTTACTCTCTAACTGATCA
ACTGTGAAATTGGAAGTACACTTGGAAGAGTTGTTTGTGGATTGTCATTGCTCTGAGCTG
ATTTACTGTGTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATA
CGGCTCATTTCAATGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATAT
CTGTGCTCCTTTGTACTTCAATTGCAATTTGCAAGGTTTGTCTTTCTTCGATTCAAATCA
CTGGACATCTGTCTGGTCAATTTGCCAAGGTTTGTCTTTCTTCGATTCAAATCACTGGAC
ATCTGTCTGGTCAAAATGAAGTTCACCATGTTGTTCTCTTGTTGCTAGTGCTTGTAATTG
TTGTAACATATTCAGAAACACATTGTTGTACCTTGTGCTAAGTGAGAAACTATATTTTTG
TTGTACCTTGGTGCGGTGCAGCACGATTGCTGGTCTGTATCTGATATGCCACTTATGTTT
TTTAATTCATCCAAAAACTGTTTTTAATAAAAAA

consensusID : consensus_6713#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 126
fasta sequence

                              [ACCTTGTGCTAAGTGAGAAACTATATTTTTGTTGTACCTTGGTGCGGTGCAGCACGATTGCTGGTCTGTATCTGATATGCCACTTATGTTTTTTAACTAATAAAAAACAAATTTTTAATGGGAAAA]

[+] EMBL BM038345             [ACCTTGTGCTAAGTGAGAAACTATATTTTTGTTGTACCTTGGTGCGGTGCAGCACGATTGCTGGTCTGTATCTGATATGCCACTTATGTTTTTTAACTAATAAAAAACAAATTTTTAATGGGAAAA]




>consensus_6713#3
ACCTTGTGCTAAGTGAGAAACTATATTTTTGTTGTACCTTGGTGCGGTGCAGCACGATTG
CTGGTCTGTATCTGATATGCCACTTATGTTTTTTAACTAATAAAAAACAAATTTTTAATG
GGAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6713#0      ------------------------------------------------------------
consensus_6713#3      ------------------------------------------------------------
consensus_6713#2      ------------------------------------------------------------
consensus_6713#1      TTTTGTGCTGAAAAGGTTGATTCTACAGATGGTGGCCATGAAGAAGATTCAGATTCGACC 60
                                                                                  

consensus_6713#0      ---GTTTCATTGTATAATCGTGCCACATGCTAGAAAATATTANCCTGTCCGTGNATTGCC 57
consensus_6713#3      ------------------------------------------------------------
consensus_6713#2      ------------------------------------------------GTGTGGACCTCT 12
consensus_6713#1      CCACTGAAATTGGTGACCAATAAGGAATCTACTGTTGCAGGAAATGGAGCAGATATTGAC 120
                                                                                  

consensus_6713#0      AANCCCTAAAGGANTCG-AACCCAATTTATACATCNCCCAGGCCACTTTATTAAAATATG 116
consensus_6713#3      ------------------------------------------------------------
consensus_6713#2      TGGCCTGACGACACGTG-ACTATAAAAATCAGGGTTTTGTGGTGAATACAACGGTTTAGA 71
consensus_6713#1      AAACAGAACTATATTGACAAACAGAACTATCCTACCAGTAATATGTCACGTGCAATGGTT 180
                                                                                  

consensus_6713#0      TACCCTTAATTACTGAAATCTCTTTATCCCAATATAGTATCATGACGCCATTTTGATTTT 176
consensus_6713#3      ------------------------------------------------------------
consensus_6713#2      AAACATATTGGAGGAGTGGTTTTCAGTGCTCTTACTCTCTAACTGATCAACTGTGAAATT 131
consensus_6713#1      TCCCCTGCTTTGACTGAGCCATGCAGCGCTGGGAATGGTGTGGAGCCCTCTTGTGCCTGA 240
                                                                                  

consensus_6713#0      C-ACGTACA--TTGGAAGAGTTGTTTGTGGATTGTCACTTGCTCTGAGCTGATTTACTGT 233
consensus_6713#3      ------------------------------------------------------------
consensus_6713#2      GGAAGTACAC-TTGGAAGAGTTGTTTGTGGATTGTCA-TTGCTCTGAGCTGATTTACTGT 189
consensus_6713#1      CGACACGTACATTGGAAGAGTTGTTTGTGGATTGTCA-TTGCTCTGAGCTGATTTACTGT 299
                                                                                  

consensus_6713#0      GTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATT 293
consensus_6713#3      ------------------------------------------------------------
consensus_6713#2      GTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATT 249
consensus_6713#1      GTTGGTACATGGTACTGCTAGTTCTGTTGACTAGAATCTCAGAAACAAATACGGCTCATT 359
                                                                                  

consensus_6713#0      TCAATGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCC 353
consensus_6713#3      ------------------------------------------------------------
consensus_6713#2      TCAATGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCC 309
consensus_6713#1      TCAATGTTGAGAAGATATATTGACGACATTTGGTTGCTTCCGTTGCAATATCTGTGCTCC 419
                                                                                  

consensus_6713#0      TTTGTACTTCAATTGCATTTGCCAAGGTTTGTGCTTTGCTTCGATTCAAATCACTGGACA 413
consensus_6713#3      ------------------------------------------------------------
consensus_6713#2      TTTGTACTTCAATTGCAATTTGCAAGGTTTGT--CTTTCTTCGATTCAAATCACTGGACA 367
consensus_6713#1      TTTGTACTTCAATTGCAATTTGCAAGGTTTGT--CTTTCTTCGATTCAAATCACTGGACA 477
                                                                                  

consensus_6713#0      TGCTGTCTGGTCATTTGC-AAGGTTTGTCTTTCTTCGATTCAAATGCACTGGACATCTGT 472
consensus_6713#3      ------------------------------------------------------------
consensus_6713#2      TCTGTCTGGTCAATTTGCCAAGGTTTGTCTTTCTTCGATTCAAAT-CACTGGACATCTGT 426
consensus_6713#1      TCTGTCTGGTCAATTTGC--AGGTTTGTCTTTCTTCGATTCAAAT-CACTGGACATCTGT 534
                                                                                  

consensus_6713#0      CTGGTGCAAAATGGAAGTTCACCATGGTTCNCTTCTTTCNCTTCGTTAGTGGCTTGTAAT 532
consensus_6713#3      ------------------------------------------------------------
consensus_6713#2      CTGGTCAAAAT--GAAGTTCACCATGTTGTTCTCTTGTTGCT------AGTGCTTGTAAT 478
consensus_6713#1      CTGGTCAAATG---AAGTTCACCATGTTGTTCTTTGTTGTTA-------GTGCTTGTAAT 584
                                                                                  

consensus_6713#0      TGGTTGTAACATATTGCAGAAACACATTGTTGGTACCTTGTGCTAAGTGAGAAACTATAT 592
consensus_6713#3      ----------------------------------ACCTTGTGCTAAGTGAGAAACTATAT 26
consensus_6713#2      TG-TTGTAACATATT-CAGAAACACATTGTTG-TACCTTGTGCTAAGTGAGAAACTATAT 535
consensus_6713#1      TG-TTGTAACATATT-CAGAAACACATTGTTG-TACCTTGTGCTAAGTGAGAAACTATAT 641
                                                        **************************

consensus_6713#0      TTTTGTTGTACCTTGGTGCGGT-CAGCACGATTGCTGGTCTGTATCTGATATGCCACTTA 651
consensus_6713#3      TTTTGTTGTACCTTGGTGCGGTGCAGCACGATTGCTGGTCTGTATCTGATATGCCACTTA 86
consensus_6713#2      TTTTGTTGTACCTTGGTGCGGTGCAGCACGATTGCTGGTCTGTATCTGATATGCCACTTA 595
consensus_6713#1      TTTTGTTGTAAAAA---------------------------------------------- 655
                      **********                                                  

consensus_6713#0      TGTTTTTTAACCAACTAAAAAAACTGTTTTTAATAATAAAAAA 694
consensus_6713#3      TGTTTTTTAACTAA-TAAAAAACAAATTTTTAATGGGAAAA-- 126
consensus_6713#2      TGTTTTTTAATTCA-TCCAAAAACTGTTTTTAATAAAAAA--- 634
consensus_6713#1      -------------------------------------------