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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1640 fasta sequence
[TTTATTGCTAACTTTTTTTTTATAAATTTAATCAAATTTAACAAAGTATGATTAGAAAAAAAAATCGAACGACTTATGTAATATGAAACGGAAGGAGTAATTTTGAGACCGAGGGAGTATATTACTGCATCTTCTCGCATTTTGCATTTTGCAAAACACGTGACAAGTAGAGTGGAGTAGTAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATCGTCAAGTCCTCCATGGTGACGGCCGGCGAGGCGACGCCGGAGCACAGGATATGGCTCTCCAACCTCGACCTGCTGGTGGCCAGGAGCCACACCCCCACCGTCTACGTCTACCGGCGAACTGGCCCCGACTCCGACGCGGCGTTTTTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGCTCGTCCCCTTCTACCCCCTCGCCGGCCGCCTCGCTCAGGACAGCGCCGGCAGGCCGGAGATCAGCTGCACCGGCGAGGGCGTGCTCTTCGTCACGGCGCGGAGTGGCGCCACCATTGACGACCTGGGCGACCTCGCCCCGTCGGACGAGCTCCGGCGGATGCTTGTCCCGGCGGCCGATGTCGCCGCTGCCAGCATCTTGGCCATGTTCCAGGTGACGTTCTTTAGGTGTGGAGGGGTGTGCCTGGGCGCGGCGATCCATCACACGGCGGCGGACGGCCTCGCGGCGCTGGACTTCGTCAACACGTGGGCCGCCATTGCGAGGGACGTCGCCGGCGACGGCGAGGCGGCGGCGGCGGCGGTGCAGCGGCCGTGGCTCGACCGCACGCTCCTCCGCGCGCGCTCCCCTCCCGCCGTGCGCTTCGACCACGCCGAGTACTCCCGTCGCCGCGGCGGCGGTTCAAAGCTGCCGTTCGACTCGGCCATCCTCCCCATGTCCAAGAACCAGCTCAACGCGCTCAAGGGCGCCGGCGCCGGCGCCGGCAAGAGGCTGTCCACTTTTACGGCGGTGGTCGCGCACGTGTGGCGGTGCGCGTGCAAGGCGCGCGGGCTCGCCGTCGCCGGAACGGAGGCGGCGACGAGGCTGTACATGACCGCCGACGCGCGCACCCGCCTGCACCCGCCGCTCCCGCGCGGCTACCTCGGCAACGCCATCTTCCGCGCGTCGGCGGTGTCCAAGGTGAGCGACATCGTCGCCGCCGGGCCGCTCGGCGCCGTCGCGGAGAAGGTGTCCGCCGCCACCGCGCGGCTCGACGACGGCTACGTCCGGTCGCTGCTGGACCACCTGGAGCAGACGGCGGCGGCGGCGAGCGGCGGCGCGGCGGGGCTCCGCAAGGGGGAGTGGGTGATGCCGGAGAGTGACCTGTGGGTGATCAGCTGGCAGGGGCTGCCGCTCTACGACGCCGACTTCGGCTGGGGGCGGCCGGCGTTCATGGGGCGTGCGTGCCTCCAGTTCAGCGGCCTCGTCTACCTCGTGCCAGGCCGAGACGACGGCGACGGCCGGCTCGACGTCGTCGTGGCCATGGACCCCGAGAGCCTTGCCAAGTTCAAGGATGTGTTCTATGAGGAGCTCAAGTGTTAGCTCCATTCGAGCTCAACACCAACTTTTTTTTTTAATTAAGCCGAATTTATAACGATTTTGTTAAAAATATATTGATTTTTCCCGAAAAAAAAATATT]
[+] EMBL CB669580 [TTTATTGCTAACTTTTTTTTTATAAATTTAATCAAATTTAACAAAGTATGATTAGAAAAAAAAATCGAACGACTTATGTAATATGAAACGGAAGGAGTAATTTTGAGACCGAGGGAGTATATTACTGCATCTTCTCGCATTTTGCATTTTGCAAAACACGTGACAAGTAGAGTGGAGTAGTAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATCGTCAAGTCCTCCATGGTGACGGCCGGCGAGGCGACGCCGGAGCACAGGATATGGCTCTCCAACCTCGACCTGCTGGTGGCCAGGAGCCACACCCCCACCGTCTACGTCTACCGGCGAACTGGCCCCGACTCCGACGCGGCGTTTTTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGCTCGTCCCCTTCTACCCCCTCGCCGGCCGCCTCGCTCAGGACAGCGCCGGCAGGCCGGAGATCAGCTGCACCGGCGAGGGCGTGCTCTTCGTCACGGCGCGGAGTGGCGCCACCATTGACGACCTGGGCGACCTCGCCCCGTCGGACGAGCTCCGGCGGATGCTTGTCCCGGCGGCCGATGTCGCCGCTGCCAGCATCTTGGCCATGTTCCAGGTGACGTTCTTTAGGTGTGGAGGGGTGTGCCTGGGCGCGGCGATCCATCACACGGCGGCGGACGGCCTCGCGGCGCTGGACTTCGTC ]
[+] EMBL AK109842 [ GTGACAAGTAGAGTGGAGTAGTAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATCGTCAAGTCCTCCATGGTGACGGCCGGCGAGGCGACGCCGGAGCACAGGATATGGCTCTCCAACCTCGACCTGCTGGTGGCCAGGAGCCACACCCCCACCGTCTACGTCTACCGGCGAACTGGCCCCGACTCCGACGCGGCGTTTTTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGCTCGTCCCCTTCTACCCCCTCGCCGGCCGCCTCGCTCAGGACAGCGCCGGCAGGCCGGAGATCAGCTGCACCGGCGAGGGCGTGCTCTTCGTCACGGCGCGGAGTGGCGCCACCATTGACGACCTGGGCGACCTCGCCCCGTCGGACGAGCTCCGGCGGATGCTTGTCCCGGCGGCCGATGTCGCCGCTGCCAGCATCTTGGCCATGTTCCAGGTGACGTTCTTTAGGTGTGGAGGGGTGTGCCTGGGCGCGGCGATCCATCACACGGCGGCGGACGGCCTCGCGGCGCTGGACTTCGTCAACACGTGGGCCGCCATTGCGAGGGACGTCGCCGGCGACGGCGAGGCGGCGGCGGCGGCGGTGCAGCGGCCGTGGCTCGACCGCACGCTCCTCCGCGCGCGCTCCCCTCCCGCCGTGCGCTTCGACCACGCCGAGTACTCCCGTCGCCGCGGCGGCGGTTCAAAGCTGCCGTTCGACTCGGCCATCCTCCCCATGTCCAAGAACCAGCTCAACGCGCTCAAGGGCGCCGGCGCCGGCGCCGGCAAGAGGCTGTCCACTTTTACGGCGGTGGTCGCGCACGTGTGGCGGTGCGCGTGCAAGGCGCGCGGGCTCGCCGTCGCCGGAACGGAGGCGGCGACGAGGCTGTACATGACCGCCGACGCGCGCACCCGCCTGCACCCGCCGCTCCCGCGCGGCTACCTCGGCAACGCCATCTTCCGCGCGTCGGCGGTGTCCAAGGTGAGCGACATCGTCGCCGCCGGGCCGCTCGGCGCCGTCGCGGAGAAGGTGTCCGCCGCCACCGCGCGGCTCGACGACGGCTACGTCCGGTCGCTGCTGGACCACCTGGAGCAGACGGCGGCGGCGGCGAGCGGCGGCGCGGCGGGGCTCCGCAAGGGGGAGTGGGTGATGCCGGAGAGTGACCTGTGGGTGATCAGCTGGCAGGGGCTGCCGCTCTACGACGCCGACTTCGGCTGGGGGCGGCCGGCGTTCATGGGGCGTGCGTGCCTCCAGTTCAGCGGCCTCGTCTACCTCGTGCCAGGCCGAGACGACGGCGACGGCCGGCTCGACGTCGTCGTGGCCATGGACCCCGAGAGCCTTGCCAAGTTCAAGGATGTGTTCTATGAGGAGCTCAAGTGTTAGCTCCATTCGAGCTCAACACCAACTTTTTTTTTTAATTAAGCCGAATTTATAACGATTTTGTTAAAAATATATTGATTTTTCCCGAAAAAAAAATATT]
consensusID : consensus_6714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence
[TTTTTTTTTTTAGCAACCAAACAANTACGGTGCAATATCCAGGCTTATCTCAGGTCAGGCCAATTTCTCTCAGGATAGCAACCAAACAGGCCTGCATGTTCTTGCATTTCGCATTTTGCAAAACACATGACAGGTAAAGTGGAGTAGTAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATGGTCGAGTCCTCCATGGTGACGGCCGGCGAGGCGACACCGGAGCACAGGATATGGCTCTCCAACCTCGACCTTCTGGTGGCCANGAGCCAAACCCCCACCGTCTACGTCTACCGGCGAACTGGCTCCGACTCCGACGCGGCGTTTNTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGCTCGTCCCCTTCTACCCCCTCGCCGGCCGCCTCGCTCAGGANAGCGCCGGCAAGGCCGGAATCAGTGCACCGGGCACAAGGGCGTGCTCTTATAGTTAACGGCGCCGGANTNACGCCCACNTTGAACTGAACCTGGGGAGAACATCNAACCCCCGTTCGAAAGAACANCCCCGGCGGATACACTTTGTTCCCCGNAGGGCGAATATATTTCCCCGCCGGGATATTAGGGCCATTTCCCGGTGAAGTACTCTATATATTCGCGAAGGTGTATACCCTGGACGNGGGGAAANCATANAAACCGGGGGNGGGANNGACATCCNGGGGGGCNGTGAATATTTGAAACGNTGGCCGAACCAGGAAGTTAATGCGATCAAACAGA]
[-] EMBL BM037894 [TTTTTTTTTTTAGCAACCAAACAANTACGGTGCAATATCCAGGCTTATCTCAGGTCAGGCCAATTTCTCTCAGGATAGCAACCAAACAGGCCTGCATGTTCTTGCATTTCGCATTTTGCAAAACACATGACAGGTAAAGTGGAGTAGTAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATGGTCGAGTCCTCCATGGTGACGGCCGGCGAGGCGACACCGGAGCACAGGATATGGCTCTCCAACCTCGACCTTCTGGTGGCCANGAGCCAAACCCCCACCGTCTACGTCTACCGGCGAACTGGCTCCGACTCCGACGCGGCGTTTNTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGCTCGTCCCCTTCTACCCCCTCGCCGGCCGCCTCGCTCAGGANAGCGCCGGCAAGGCCGGAATCAGTGCACCGGGCACAAGGGCGTGCTCTTATAGTTAACGGCGCCGGANTNACGCCCACNTTGAACTGAACCTGGGGAGAACATCNAACCCCCGTTCGAAAGAACANCCCCGGCGGATACACTTTGTTCCCCGNAGGGCGAATATATTTCCCCGCCGGGATATTAGGGCCATTTCCCGGTGAAGTACTCTATATATTCGCGAAGGTGTATACCCTGGACGNGGGGAAANCATANAAACCGGGGGNGGGANNGACATCCNGGGGGGCNGTGAATATTTGAAACGNTGGCCGAACCAGGAAGTTAATGCGATCAAACAGA]
consensusID : consensus_6714#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence
[GTGTCGGTGCGCGTGCAAGGCGTGCGGGCTCGCAGTCGCCGGAATGGAGGCGGAGAGGAGGTTGTACATGACAGCCGACGCGTGCACCCGCCTGCACCATCCGCTCCCGCGCGGATACTTCGGCAAAGCCATTTTCCGCGGGTGGGCGGTGTCCAAGGTGAGAGACATGGTCGCCGCCGGGCCGCTCGGAGCAGTCGCGGAGAAGGTGTCCGCCGCCTCCGCGCGGCTCGAGGACGGTTACGTCCGGTCGCTGCTGGACCACGTGGAGCAGACGGCGGCGCCGGCGAGCGGCGGCGCGGCGGGGCTCCGCAAGGGGGAGTGGGTGATGCCGGAGAGTGACCTGTGGGTGATCAG]
[-] EMBL CB649795 [GTGTCGGTGCGCGTGCAAGGCGTGCGGGCTCGCAGTCGCCGGAATGGAGGCGGAGAGGAGGTTGTACATGACAGCCGACGCGTGCACCCGCCTGCACCATCCGCTCCCGCGCGGATACTTCGGCAAAGCCATTTTCCGCGGGTGGGCGGTGTCCAAGGTGAGAGACATGGTCGCCGCCGGGCCGCTCGGAGCAGTCGCGGAGAAGGTGTCCGCCGCCTCCGCGCGGCTCGAGGACGGTTACGTCCGGTCGCTGCTGGACCACGTGGAGCAGACGGCGGCGCCGGCGAGCGGCGGCGCGGCGGGGCTCCGCAAGGGGGAGTGGGTGATGCCGGAGAGTGACCTGTGGGTGATCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6714#0 TTTATTGCTAACTTTTTTTTTATAAATTTAATCAAATTTAACAAAGTATGATTAGAAAAA 60
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 AAAATCGAACGACTTATGTAATATGAAACGGAAGGAGTAATTTTGAGACCGAGGGAGTAT 120
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 ATTACTGCATCTTCTCGCATTTTGCATTTTGCAAAACACGTGACAAGTAGAGTGGAGTAG 180
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 TAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATCGTCAAGTCCTCCATGGTGAC 240
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 GGCCGGCGAGGCGACGCCGGAGCACAGGATATGGCTCTCCAACCTCGACCTGCTGGTGGC 300
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 CAGGAGCCACACCCCCACCGTCTACGTCTACCGGCGAACTGGCCCCGACTCCGACGCGGC 360
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 GTTTTTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGCTCGTCCCCTTCTACCC 420
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 CCTCGCCGGCCGCCTCGCTCAGGACAGCGCCGGCAGGCCGGAGATCAGCTGCACCGGCGA 480
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 GGGCGTGCTCTTCGTCACGGCGCGGAGTGGCGCCACCATTGACGACCTGGGCGACCTCGC 540
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 CCCGTCGGACGAGCTCCGGCGGATGCTTGTCCCGGCGGCCGATGTCGCCGCTGCCAGCAT 600
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 -------------------------------------------------TTTTTTTTTTT 11
consensus_6714#0 CTTGGCCATGTTCCAGGTGACGTTCTTTAGGTGTGGAGGGGTGTGCCTGGGCGCGGCGAT 660
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 AGCAACCAAACAANTACGGTGCAATATCCAGGCTTATCTCAGGTCAGGCCAATTTCTCTC 71
consensus_6714#0 CCATCACACGGCGGCGGACGGCCTCGCGGCGCTGGACTTCGTCAACACGTGGGCCGCCAT 720
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 AGGATAGCAACCAAACAGGCCTGCATGTTCTTGCATTTCGCATTTTGCAAAACACATGAC 131
consensus_6714#0 TGCGAGGGACGTCGCCGGCGACGGCGAGGCGGCGGCGGCGGCGGTGCAGCGGCCGTGGCT 780
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 AGGTAAAGTGGAGTAGTAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATGGTCG 191
consensus_6714#0 CGACCGCACGCTCCTCCGCGCGCGCTCCCCTCCCGCCGTGCGCTTCGACCACGCCGAGTA 840
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 AGTCCTCCATGGTGACGGCCGGCGAGGCGACACCGGAGCACAGGATATGGCTCTCCAACC 251
consensus_6714#0 CTCCCGTCGCCGCGGCGGCGGTTCAAAGCTGCCGTTCGACTCGGCCATCCTCCCCATGTC 900
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 TCGACCTTCTGGTGGCCANGAGCCAAACCCCCACCGTCTACGTCTACCGGCGAACTGGCT 311
consensus_6714#0 CAAGAACCAGCTCAACGCGCTCAAGGGCGCCGGCGCCGGCGCCGGCAAGAGGCTGTCCAC 960
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 CCGACTCCGACGCGGCGTTTNTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGC 371
consensus_6714#0 TTTTACGGCGGTGGTCGCGCACGTGTGGCGGTGCGCGTGCAAG-GCGCGCGGGCTCGCCG 1019
consensus_6714#2 ------------------------GTGTCGGTGCGCGTGCAAG-GCGTGCGGGCTCGCAG 35
consensus_6714#1 TCGTCCCCTTCTACCCCCTCGCCGGCCGCCTCGCTCAGGANAGCGCCGGCAAGGCCGGAA 431
* * ** * * ** ** ** * **
consensus_6714#0 TCGCCGGAACGGAGGCGGCGACGAGGCTGTACATGACCGCCGACGCGCGCACCCGCCTGC 1079
consensus_6714#2 TCGCCGGAATGGAGGCGGAGAGGAGGTTGTACATGACAGCCGACGCGTGCACCCGCCTGC 95
consensus_6714#1 TCAGTGCACCGGGCACAAGGGCGTGCTCTTATA-GTTAACGGCGCCGGANTNACGCCCAC 490
** * * ** * * * * ** * * * * ** **** *
consensus_6714#0 ACC-CGCCGCTCCCGCGCGGCTACCTCGGC----------AACGCCATCTTCCGCGCGTC 1128
consensus_6714#2 ACC-ATCCGCTCCCGCGCGGATACTTCGGC----------AAAGCCATTTTCCGCGGGTG 144
consensus_6714#1 NTTGAACTGAACCTGGGGAGAACATCNAACCCCCGTTCGAAAGAACANCCCCGGCGGATA 550
* * ** * * * * ** ** * *** *
consensus_6714#0 GGCGGTGTCCAAGGTGAGCGACATCG---TCGCCGCCGGGCCGCTCGGCGCCGTCGCGGA 1185
consensus_6714#2 GGCGGTGTCCAAGGTGAGAGACATGG---TCGCCGCCGGGCCGCTCGGAGCAGTCGCGGA 201
consensus_6714#1 CACTTTGTTCCCCGNAGGGCGAATATATTTCCCCGCCGGGATATTAGGGCCATTTCCCGG 610
* *** * * * ** ** ******** * ** * * * *
consensus_6714#0 GAAGGTGTCCGCCGCCACCGCGCGGCTCGACGACGGCTACGTCCGGTCGCTGCTGGACCA 1245
consensus_6714#2 GAAGGTGTCCGCCGCCTCCGCGCGGCTCGAGGACGGTTACGTCCGGTCGCTGCTGGACCA 261
consensus_6714#1 TGAAGTACTCTATATATTCGCG-------AAGGTGTATAC-CCTGGACGNGGGGAAANCA 662
* ** * **** * * * *** * ** ** * * **
consensus_6714#0 CCTGGAGCAGACGGCGGCGGCGGCGAGCGGCGGCGCGGCGGGGCTCCGCAAGGGGGAGTG 1305
consensus_6714#2 CGTGGAGCAGACGGCGGCGCCGGCGAGCGGCGGCGCGGCGGGGCTCCGCAAGGGGGAGTG 321
consensus_6714#1 TANAAACCGGG-GGNGGGANNGACATCCNGGGGGGCNGTGAATATTTGAAACGN----TG 717
* * * ** ** * * * * ** ** * * * * ** * **
consensus_6714#0 GGTGATGCCGGAGAGTGACCTGTGGGTGATCAGCTGGCAGGGGCTGCCGCTCTACGACGC 1365
consensus_6714#2 GGTGATGCCGGAGAGTGACCTGTGGGTGATCAG--------------------------- 354
consensus_6714#1 GCCGAACCAGGAAGTTAA--TGCGATCAAACAGA-------------------------- 749
* ** * *** * * ** * * ***
consensus_6714#0 CGACTTCGGCTGGGGGCGGCCGGCGTTCATGGGGCGTGCGTGCCTCCAGTTCAGCGGCCT 1425
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 CGTCTACCTCGTGCCAGGCCGAGACGACGGCGACGGCCGGCTCGACGTCGTCGTGGCCAT 1485
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 GGACCCCGAGAGCCTTGCCAAGTTCAAGGATGTGTTCTATGAGGAGCTCAAGTGTTAGCT 1545
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 CCATTCGAGCTCAACACCAACTTTTTTTTTTAATTAAGCCGAATTTATAACGATTTTGTT 1605
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 ------------------------------------------------------------
consensus_6714#0 AAAAATATATTGATTTTTCCCGAAAAAAAAATATT 1640
consensus_6714#2 -----------------------------------
consensus_6714#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||