These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1640 fasta sequence [TTTATTGCTAACTTTTTTTTTATAAATTTAATCAAATTTAACAAAGTATGATTAGAAAAAAAAATCGAACGACTTATGTAATATGAAACGGAAGGAGTAATTTTGAGACCGAGGGAGTATATTACTGCATCTTCTCGCATTTTGCATTTTGCAAAACACGTGACAAGTAGAGTGGAGTAGTAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATCGTCAAGTCCTCCATGGTGACGGCCGGCGAGGCGACGCCGGAGCACAGGATATGGCTCTCCAACCTCGACCTGCTGGTGGCCAGGAGCCACACCCCCACCGTCTACGTCTACCGGCGAACTGGCCCCGACTCCGACGCGGCGTTTTTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGCTCGTCCCCTTCTACCCCCTCGCCGGCCGCCTCGCTCAGGACAGCGCCGGCAGGCCGGAGATCAGCTGCACCGGCGAGGGCGTGCTCTTCGTCACGGCGCGGAGTGGCGCCACCATTGACGACCTGGGCGACCTCGCCCCGTCGGACGAGCTCCGGCGGATGCTTGTCCCGGCGGCCGATGTCGCCGCTGCCAGCATCTTGGCCATGTTCCAGGTGACGTTCTTTAGGTGTGGAGGGGTGTGCCTGGGCGCGGCGATCCATCACACGGCGGCGGACGGCCTCGCGGCGCTGGACTTCGTCAACACGTGGGCCGCCATTGCGAGGGACGTCGCCGGCGACGGCGAGGCGGCGGCGGCGGCGGTGCAGCGGCCGTGGCTCGACCGCACGCTCCTCCGCGCGCGCTCCCCTCCCGCCGTGCGCTTCGACCACGCCGAGTACTCCCGTCGCCGCGGCGGCGGTTCAAAGCTGCCGTTCGACTCGGCCATCCTCCCCATGTCCAAGAACCAGCTCAACGCGCTCAAGGGCGCCGGCGCCGGCGCCGGCAAGAGGCTGTCCACTTTTACGGCGGTGGTCGCGCACGTGTGGCGGTGCGCGTGCAAGGCGCGCGGGCTCGCCGTCGCCGGAACGGAGGCGGCGACGAGGCTGTACATGACCGCCGACGCGCGCACCCGCCTGCACCCGCCGCTCCCGCGCGGCTACCTCGGCAACGCCATCTTCCGCGCGTCGGCGGTGTCCAAGGTGAGCGACATCGTCGCCGCCGGGCCGCTCGGCGCCGTCGCGGAGAAGGTGTCCGCCGCCACCGCGCGGCTCGACGACGGCTACGTCCGGTCGCTGCTGGACCACCTGGAGCAGACGGCGGCGGCGGCGAGCGGCGGCGCGGCGGGGCTCCGCAAGGGGGAGTGGGTGATGCCGGAGAGTGACCTGTGGGTGATCAGCTGGCAGGGGCTGCCGCTCTACGACGCCGACTTCGGCTGGGGGCGGCCGGCGTTCATGGGGCGTGCGTGCCTCCAGTTCAGCGGCCTCGTCTACCTCGTGCCAGGCCGAGACGACGGCGACGGCCGGCTCGACGTCGTCGTGGCCATGGACCCCGAGAGCCTTGCCAAGTTCAAGGATGTGTTCTATGAGGAGCTCAAGTGTTAGCTCCATTCGAGCTCAACACCAACTTTTTTTTTTAATTAAGCCGAATTTATAACGATTTTGTTAAAAATATATTGATTTTTCCCGAAAAAAAAATATT] [+] EMBL CB669580 [TTTATTGCTAACTTTTTTTTTATAAATTTAATCAAATTTAACAAAGTATGATTAGAAAAAAAAATCGAACGACTTATGTAATATGAAACGGAAGGAGTAATTTTGAGACCGAGGGAGTATATTACTGCATCTTCTCGCATTTTGCATTTTGCAAAACACGTGACAAGTAGAGTGGAGTAGTAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATCGTCAAGTCCTCCATGGTGACGGCCGGCGAGGCGACGCCGGAGCACAGGATATGGCTCTCCAACCTCGACCTGCTGGTGGCCAGGAGCCACACCCCCACCGTCTACGTCTACCGGCGAACTGGCCCCGACTCCGACGCGGCGTTTTTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGCTCGTCCCCTTCTACCCCCTCGCCGGCCGCCTCGCTCAGGACAGCGCCGGCAGGCCGGAGATCAGCTGCACCGGCGAGGGCGTGCTCTTCGTCACGGCGCGGAGTGGCGCCACCATTGACGACCTGGGCGACCTCGCCCCGTCGGACGAGCTCCGGCGGATGCTTGTCCCGGCGGCCGATGTCGCCGCTGCCAGCATCTTGGCCATGTTCCAGGTGACGTTCTTTAGGTGTGGAGGGGTGTGCCTGGGCGCGGCGATCCATCACACGGCGGCGGACGGCCTCGCGGCGCTGGACTTCGTC ] [+] EMBL AK109842 [ GTGACAAGTAGAGTGGAGTAGTAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATCGTCAAGTCCTCCATGGTGACGGCCGGCGAGGCGACGCCGGAGCACAGGATATGGCTCTCCAACCTCGACCTGCTGGTGGCCAGGAGCCACACCCCCACCGTCTACGTCTACCGGCGAACTGGCCCCGACTCCGACGCGGCGTTTTTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGCTCGTCCCCTTCTACCCCCTCGCCGGCCGCCTCGCTCAGGACAGCGCCGGCAGGCCGGAGATCAGCTGCACCGGCGAGGGCGTGCTCTTCGTCACGGCGCGGAGTGGCGCCACCATTGACGACCTGGGCGACCTCGCCCCGTCGGACGAGCTCCGGCGGATGCTTGTCCCGGCGGCCGATGTCGCCGCTGCCAGCATCTTGGCCATGTTCCAGGTGACGTTCTTTAGGTGTGGAGGGGTGTGCCTGGGCGCGGCGATCCATCACACGGCGGCGGACGGCCTCGCGGCGCTGGACTTCGTCAACACGTGGGCCGCCATTGCGAGGGACGTCGCCGGCGACGGCGAGGCGGCGGCGGCGGCGGTGCAGCGGCCGTGGCTCGACCGCACGCTCCTCCGCGCGCGCTCCCCTCCCGCCGTGCGCTTCGACCACGCCGAGTACTCCCGTCGCCGCGGCGGCGGTTCAAAGCTGCCGTTCGACTCGGCCATCCTCCCCATGTCCAAGAACCAGCTCAACGCGCTCAAGGGCGCCGGCGCCGGCGCCGGCAAGAGGCTGTCCACTTTTACGGCGGTGGTCGCGCACGTGTGGCGGTGCGCGTGCAAGGCGCGCGGGCTCGCCGTCGCCGGAACGGAGGCGGCGACGAGGCTGTACATGACCGCCGACGCGCGCACCCGCCTGCACCCGCCGCTCCCGCGCGGCTACCTCGGCAACGCCATCTTCCGCGCGTCGGCGGTGTCCAAGGTGAGCGACATCGTCGCCGCCGGGCCGCTCGGCGCCGTCGCGGAGAAGGTGTCCGCCGCCACCGCGCGGCTCGACGACGGCTACGTCCGGTCGCTGCTGGACCACCTGGAGCAGACGGCGGCGGCGGCGAGCGGCGGCGCGGCGGGGCTCCGCAAGGGGGAGTGGGTGATGCCGGAGAGTGACCTGTGGGTGATCAGCTGGCAGGGGCTGCCGCTCTACGACGCCGACTTCGGCTGGGGGCGGCCGGCGTTCATGGGGCGTGCGTGCCTCCAGTTCAGCGGCCTCGTCTACCTCGTGCCAGGCCGAGACGACGGCGACGGCCGGCTCGACGTCGTCGTGGCCATGGACCCCGAGAGCCTTGCCAAGTTCAAGGATGTGTTCTATGAGGAGCTCAAGTGTTAGCTCCATTCGAGCTCAACACCAACTTTTTTTTTTAATTAAGCCGAATTTATAACGATTTTGTTAAAAATATATTGATTTTTCCCGAAAAAAAAATATT] consensusID : consensus_6714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence [TTTTTTTTTTTAGCAACCAAACAANTACGGTGCAATATCCAGGCTTATCTCAGGTCAGGCCAATTTCTCTCAGGATAGCAACCAAACAGGCCTGCATGTTCTTGCATTTCGCATTTTGCAAAACACATGACAGGTAAAGTGGAGTAGTAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATGGTCGAGTCCTCCATGGTGACGGCCGGCGAGGCGACACCGGAGCACAGGATATGGCTCTCCAACCTCGACCTTCTGGTGGCCANGAGCCAAACCCCCACCGTCTACGTCTACCGGCGAACTGGCTCCGACTCCGACGCGGCGTTTNTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGCTCGTCCCCTTCTACCCCCTCGCCGGCCGCCTCGCTCAGGANAGCGCCGGCAAGGCCGGAATCAGTGCACCGGGCACAAGGGCGTGCTCTTATAGTTAACGGCGCCGGANTNACGCCCACNTTGAACTGAACCTGGGGAGAACATCNAACCCCCGTTCGAAAGAACANCCCCGGCGGATACACTTTGTTCCCCGNAGGGCGAATATATTTCCCCGCCGGGATATTAGGGCCATTTCCCGGTGAAGTACTCTATATATTCGCGAAGGTGTATACCCTGGACGNGGGGAAANCATANAAACCGGGGGNGGGANNGACATCCNGGGGGGCNGTGAATATTTGAAACGNTGGCCGAACCAGGAAGTTAATGCGATCAAACAGA] [-] EMBL BM037894 [TTTTTTTTTTTAGCAACCAAACAANTACGGTGCAATATCCAGGCTTATCTCAGGTCAGGCCAATTTCTCTCAGGATAGCAACCAAACAGGCCTGCATGTTCTTGCATTTCGCATTTTGCAAAACACATGACAGGTAAAGTGGAGTAGTAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATGGTCGAGTCCTCCATGGTGACGGCCGGCGAGGCGACACCGGAGCACAGGATATGGCTCTCCAACCTCGACCTTCTGGTGGCCANGAGCCAAACCCCCACCGTCTACGTCTACCGGCGAACTGGCTCCGACTCCGACGCGGCGTTTNTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGCTCGTCCCCTTCTACCCCCTCGCCGGCCGCCTCGCTCAGGANAGCGCCGGCAAGGCCGGAATCAGTGCACCGGGCACAAGGGCGTGCTCTTATAGTTAACGGCGCCGGANTNACGCCCACNTTGAACTGAACCTGGGGAGAACATCNAACCCCCGTTCGAAAGAACANCCCCGGCGGATACACTTTGTTCCCCGNAGGGCGAATATATTTCCCCGCCGGGATATTAGGGCCATTTCCCGGTGAAGTACTCTATATATTCGCGAAGGTGTATACCCTGGACGNGGGGAAANCATANAAACCGGGGGNGGGANNGACATCCNGGGGGGCNGTGAATATTTGAAACGNTGGCCGAACCAGGAAGTTAATGCGATCAAACAGA] consensusID : consensus_6714#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [GTGTCGGTGCGCGTGCAAGGCGTGCGGGCTCGCAGTCGCCGGAATGGAGGCGGAGAGGAGGTTGTACATGACAGCCGACGCGTGCACCCGCCTGCACCATCCGCTCCCGCGCGGATACTTCGGCAAAGCCATTTTCCGCGGGTGGGCGGTGTCCAAGGTGAGAGACATGGTCGCCGCCGGGCCGCTCGGAGCAGTCGCGGAGAAGGTGTCCGCCGCCTCCGCGCGGCTCGAGGACGGTTACGTCCGGTCGCTGCTGGACCACGTGGAGCAGACGGCGGCGCCGGCGAGCGGCGGCGCGGCGGGGCTCCGCAAGGGGGAGTGGGTGATGCCGGAGAGTGACCTGTGGGTGATCAG] [-] EMBL CB649795 [GTGTCGGTGCGCGTGCAAGGCGTGCGGGCTCGCAGTCGCCGGAATGGAGGCGGAGAGGAGGTTGTACATGACAGCCGACGCGTGCACCCGCCTGCACCATCCGCTCCCGCGCGGATACTTCGGCAAAGCCATTTTCCGCGGGTGGGCGGTGTCCAAGGTGAGAGACATGGTCGCCGCCGGGCCGCTCGGAGCAGTCGCGGAGAAGGTGTCCGCCGCCTCCGCGCGGCTCGAGGACGGTTACGTCCGGTCGCTGCTGGACCACGTGGAGCAGACGGCGGCGCCGGCGAGCGGCGGCGCGGCGGGGCTCCGCAAGGGGGAGTGGGTGATGCCGGAGAGTGACCTGTGGGTGATCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6714#0 TTTATTGCTAACTTTTTTTTTATAAATTTAATCAAATTTAACAAAGTATGATTAGAAAAA 60 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 AAAATCGAACGACTTATGTAATATGAAACGGAAGGAGTAATTTTGAGACCGAGGGAGTAT 120 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 ATTACTGCATCTTCTCGCATTTTGCATTTTGCAAAACACGTGACAAGTAGAGTGGAGTAG 180 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 TAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATCGTCAAGTCCTCCATGGTGAC 240 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 GGCCGGCGAGGCGACGCCGGAGCACAGGATATGGCTCTCCAACCTCGACCTGCTGGTGGC 300 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 CAGGAGCCACACCCCCACCGTCTACGTCTACCGGCGAACTGGCCCCGACTCCGACGCGGC 360 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 GTTTTTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGCTCGTCCCCTTCTACCC 420 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 CCTCGCCGGCCGCCTCGCTCAGGACAGCGCCGGCAGGCCGGAGATCAGCTGCACCGGCGA 480 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 GGGCGTGCTCTTCGTCACGGCGCGGAGTGGCGCCACCATTGACGACCTGGGCGACCTCGC 540 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 CCCGTCGGACGAGCTCCGGCGGATGCTTGTCCCGGCGGCCGATGTCGCCGCTGCCAGCAT 600 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 -------------------------------------------------TTTTTTTTTTT 11 consensus_6714#0 CTTGGCCATGTTCCAGGTGACGTTCTTTAGGTGTGGAGGGGTGTGCCTGGGCGCGGCGAT 660 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 AGCAACCAAACAANTACGGTGCAATATCCAGGCTTATCTCAGGTCAGGCCAATTTCTCTC 71 consensus_6714#0 CCATCACACGGCGGCGGACGGCCTCGCGGCGCTGGACTTCGTCAACACGTGGGCCGCCAT 720 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 AGGATAGCAACCAAACAGGCCTGCATGTTCTTGCATTTCGCATTTTGCAAAACACATGAC 131 consensus_6714#0 TGCGAGGGACGTCGCCGGCGACGGCGAGGCGGCGGCGGCGGCGGTGCAGCGGCCGTGGCT 780 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 AGGTAAAGTGGAGTAGTAGAGAAAAGCATCTTCTCGCATCCATGGCAGTGGAGATGGTCG 191 consensus_6714#0 CGACCGCACGCTCCTCCGCGCGCGCTCCCCTCCCGCCGTGCGCTTCGACCACGCCGAGTA 840 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 AGTCCTCCATGGTGACGGCCGGCGAGGCGACACCGGAGCACAGGATATGGCTCTCCAACC 251 consensus_6714#0 CTCCCGTCGCCGCGGCGGCGGTTCAAAGCTGCCGTTCGACTCGGCCATCCTCCCCATGTC 900 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 TCGACCTTCTGGTGGCCANGAGCCAAACCCCCACCGTCTACGTCTACCGGCGAACTGGCT 311 consensus_6714#0 CAAGAACCAGCTCAACGCGCTCAAGGGCGCCGGCGCCGGCGCCGGCAAGAGGCTGTCCAC 960 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 CCGACTCCGACGCGGCGTTTNTCTCGCCGGACGTCCTCAAGGCCGCCCTGTCCAAGGTGC 371 consensus_6714#0 TTTTACGGCGGTGGTCGCGCACGTGTGGCGGTGCGCGTGCAAG-GCGCGCGGGCTCGCCG 1019 consensus_6714#2 ------------------------GTGTCGGTGCGCGTGCAAG-GCGTGCGGGCTCGCAG 35 consensus_6714#1 TCGTCCCCTTCTACCCCCTCGCCGGCCGCCTCGCTCAGGANAGCGCCGGCAAGGCCGGAA 431 * * ** * * ** ** ** * ** consensus_6714#0 TCGCCGGAACGGAGGCGGCGACGAGGCTGTACATGACCGCCGACGCGCGCACCCGCCTGC 1079 consensus_6714#2 TCGCCGGAATGGAGGCGGAGAGGAGGTTGTACATGACAGCCGACGCGTGCACCCGCCTGC 95 consensus_6714#1 TCAGTGCACCGGGCACAAGGGCGTGCTCTTATA-GTTAACGGCGCCGGANTNACGCCCAC 490 ** * * ** * * * * ** * * * * ** **** * consensus_6714#0 ACC-CGCCGCTCCCGCGCGGCTACCTCGGC----------AACGCCATCTTCCGCGCGTC 1128 consensus_6714#2 ACC-ATCCGCTCCCGCGCGGATACTTCGGC----------AAAGCCATTTTCCGCGGGTG 144 consensus_6714#1 NTTGAACTGAACCTGGGGAGAACATCNAACCCCCGTTCGAAAGAACANCCCCGGCGGATA 550 * * ** * * * * ** ** * *** * consensus_6714#0 GGCGGTGTCCAAGGTGAGCGACATCG---TCGCCGCCGGGCCGCTCGGCGCCGTCGCGGA 1185 consensus_6714#2 GGCGGTGTCCAAGGTGAGAGACATGG---TCGCCGCCGGGCCGCTCGGAGCAGTCGCGGA 201 consensus_6714#1 CACTTTGTTCCCCGNAGGGCGAATATATTTCCCCGCCGGGATATTAGGGCCATTTCCCGG 610 * *** * * * ** ** ******** * ** * * * * consensus_6714#0 GAAGGTGTCCGCCGCCACCGCGCGGCTCGACGACGGCTACGTCCGGTCGCTGCTGGACCA 1245 consensus_6714#2 GAAGGTGTCCGCCGCCTCCGCGCGGCTCGAGGACGGTTACGTCCGGTCGCTGCTGGACCA 261 consensus_6714#1 TGAAGTACTCTATATATTCGCG-------AAGGTGTATAC-CCTGGACGNGGGGAAANCA 662 * ** * **** * * * *** * ** ** * * ** consensus_6714#0 CCTGGAGCAGACGGCGGCGGCGGCGAGCGGCGGCGCGGCGGGGCTCCGCAAGGGGGAGTG 1305 consensus_6714#2 CGTGGAGCAGACGGCGGCGCCGGCGAGCGGCGGCGCGGCGGGGCTCCGCAAGGGGGAGTG 321 consensus_6714#1 TANAAACCGGG-GGNGGGANNGACATCCNGGGGGGCNGTGAATATTTGAAACGN----TG 717 * * * ** ** * * * * ** ** * * * * ** * ** consensus_6714#0 GGTGATGCCGGAGAGTGACCTGTGGGTGATCAGCTGGCAGGGGCTGCCGCTCTACGACGC 1365 consensus_6714#2 GGTGATGCCGGAGAGTGACCTGTGGGTGATCAG--------------------------- 354 consensus_6714#1 GCCGAACCAGGAAGTTAA--TGCGATCAAACAGA-------------------------- 749 * ** * *** * * ** * * *** consensus_6714#0 CGACTTCGGCTGGGGGCGGCCGGCGTTCATGGGGCGTGCGTGCCTCCAGTTCAGCGGCCT 1425 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 CGTCTACCTCGTGCCAGGCCGAGACGACGGCGACGGCCGGCTCGACGTCGTCGTGGCCAT 1485 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 GGACCCCGAGAGCCTTGCCAAGTTCAAGGATGTGTTCTATGAGGAGCTCAAGTGTTAGCT 1545 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 CCATTCGAGCTCAACACCAACTTTTTTTTTTAATTAAGCCGAATTTATAACGATTTTGTT 1605 consensus_6714#2 ------------------------------------------------------------ consensus_6714#1 ------------------------------------------------------------ consensus_6714#0 AAAAATATATTGATTTTTCCCGAAAAAAAAATATT 1640 consensus_6714#2 ----------------------------------- consensus_6714#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||