cluster # 6715

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Oryza sativa
cluster # 6715 cluster # 6715 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6715#0 length = 1680 sequences # 3

consensus_6715#1 length = 288 sequences # 1

consensusID : consensus_6715#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1680
fasta sequence

                              [GTGACCGACATGGAGACATTCCTGCCAGCGATCTTGAGCGACCTCCTCGGCAGGTCCATCTCTTACCTGGTGCAGCGATACCGGCAGCAGAGCACGGTGCAGGACGACCTCGAGAAGCTGCGCCTCGCGCTGGTCAGGGTGCACGTCACCGTCGAGGAGGCCGAGGCGCGGCACATCACCAACAAGGCCATGCTCCGGCAGCTCGACGTGCTCAGGGAGGCCATGTACAGCGGCTACCACATGCTCGACGCCCTCACGTACCGAGCCCACGCGGACGGGGCGTCGTTCTCGTTCGCGCCGTCCAGGCTCAACGCCGCCAAGCGCCTCCGCCTCCTCGCCGCCGACGAGGGCGCCGCGGAGCTGCGCCGCACGGTCGACAGCCTCGGGCGGACGATCGCCGACATGAGGGAGTTCGTCGTCTTCCTCAAGGGCTACCCTCGCATCAGTACTCAGCCTTACAGCATGCACCTGCTCCTCGACAAGCTGATGTTCGGCCGGCAGAAGGAGGTGGAGCAGGTCGTTGGATTCCTGCTGCAGCCGGACGTCTGCGGCGCTGGCGCCGGCGCCGGCGCCGGCGTGCTGCACATAGTTGGCGTCGCGAGGGTCGGGAAGAGCACCCTCGTCGAACACGTCTGCCACGACGAGAGGGTCCGCGGCCGATTCTCCTCCATCGTGTGCTTGAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCTCTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTCGTCGTCGACCTAGCCGAGGACGAGGAGCCCGTGGGCGACGGGGCATGGAGGCGGCTGCGGTCGTCGGCGATGTGCAGGGCGCGGGGGAGCAGGATCATCGTGACGAGCAGGTCGCCGGAGACGGTCCGTGGCATCCCGGCGGCGCGCGCCATCGAGCTCAAGTTCCTCCGCGACGACGTCTACTGGTACTTCTTCAAGGTGCTCGCGTTCGGCAGCGCGAACCCGGACGACCACCCGAGGCTGGCGTCCATCGCCATGGACATCTCCGCGGAGCAGAAGGGCGGCTTCATAGGCGCCACCATCGCCAGCAGCCTGATGAGGGCCAACCCGGACGCGCACTACTGGACCCTCATCCTCAAGAACATGAGGGAGTACACGCGGAAGCACCGCGCCATGTTCGGCAAGCACCCGCACGACCTGCTGCGGAACAACCACCCGGTGTACCTGTGGAGGCTGGCCGAGAGCTCCAAGATCTTCCTGTGCCACGGCTTCTACACCGCGTGCCCCGCCAAGCAGGAGATCCCCAGGGTGACGTTCCAGGAGGTGCTGTCCGGTAGGGTGACGCCCCGCGGGAGGTTCGAGGTCCTGGCGTGGACGTCGCAGATACCCCCTTGCCGGAGCTACCTGATGAGCTGCTCGCTGGACACGCCGCCTGGTCCGCACCGTGTCCTTGATAGGAAGAAGCGTCTTAGGCAGCTGGTTACATGAAATGAAGCTGATCATCTCGTTTCATCTTGTCATGGTGTATGTAGATCCGATCCTCTGCAGCGGCTGTGCGCGAAATTGTACATTGCATTAAGTTGTGGTCCCACGTAATGTGTAGTTGAATCAAACTCCTCCGCCTCCCAATGCAACCTGTGGATTGAAACTGTGGCGCCAACAACGAAGTTGCGCCAAATAGCATCCTGCCAT]

[+] EMBL AK105712             [GTGACCGACATGGAGACATTCCTGCCAGCGATCTTGAGCGACCTCCTCGGCAGGTCCATCTCTTACCTGGTGCAGCGATACCGGCAGCAGAGCACGGTGCAGGACGACCTCGAGAAGCTGCGCCTCGCGCTGGTCAGGGTGCACGTCACCGTCGAGGAGGCCGAGGCGCGGCACATCACCAACAAGGCCATGCTCCGGCAGCTCGACGTGCTCAGGGAGGCCATGTACAGCGGCTACCACATGCTCGACGCCCTCACGTACCGAGCCCACGCGGACGGGGCGTCGTTCTCGTTCGCGCCGTCCAGGCTCAACGCCGCCAAGCGCCTCCGCCTCCTCGCCGCCGACGAGGGCGCCGCGGAGCTGCGCCGCACGGTCGACAGCCTCGGGCGGACGATCGCCGACATGAGGGAGTTCGTCGTCTTCCTCAAGGGCTACCCTCGCATCAGTACTCAGCCTTACAGCATGCACCTGCTCCTCGACAAGCTGATGTTCGGCCGGCAGAAGGAGGTGGAGCAGGTCGTTGGATTCCTGCTGCAGCCGGACGTCTGCGGCGCTGGCGCCGGCGCCGGCGCCGGCGTGCTGCACATAGTTGGCGTCGCGAGGGTCGGGAAGAGCACCCTCGTCGAACACGTCTGCCACGACGAGAGGGTCCGCGGCCGATTCTCCTCCATCGTGTGCTTGAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCTCTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTCGTCGTCGACCTAGCCGAGGACGAGGAGCCCGTGGGCGACGGGGCATGGAGGCGGCTGCGGTCGTCGGCGATGTGCAGGGCGCGGGGGAGCAGGATCATCGTGACGAGCAGGTCGCCGGAGACGGTCCGTGGCATCCCGGCGGCGCGCGCCATCGAGCTCAAGTTCCTCCGCGACGACGTCTACTGGTACTTCTTCAAGGTGCTCGCGTTCGGCAGCGCGAACCCGGACGACCACCCGAGGCTGGCGTCCATCGCCATGGACATCTCCGCGGAGCAGAAGGGCGGCTTCATAGGCGCCACCATCGCCAGCAGCCTGATGAGGGCCAACCCGGACGCGCACTACTGGACCCTCATCCTCAAGAACATGAGGGAGTACACGCGGAAGCACCGCGCCATGTTCGGCAAGCACCCGCACGACCTGCTGCGGAACAACCACCCGGTGTACCTGTGGAGGCTGGCCGAGAGCTCCAAGATCTTCCTGTGCCACGGCTTCTACACCGCGTGCCCCGCCAAGCAGGAGATCCCCAGGGTGACGTTCCAGGAGGTGCTGTCCGGTAGGGTGACGCCCCGCGGGAGGTTCGAGGTCCTGGCGTGGACGTCGCAGATACCCCCTTGCCGGAGCTACCTGATGAGCTGCTCGCTGGACACGCCGCCTGGTCCGCACCGTGTCCTTGATAGGAAGAAGCGTCTTAGGCAGCTGGTTACATGAAATGAAGCTGATCATCTCGTTTCATCTTGTCATGGTGTATGTAGATCCGATCCTCTGCAGCGGCTGTGCGCGAAATTGTACATTGCATTAAGTTGTGGTCCCACGTAATGTG                                                                                            ]
[+] EMBL CB676321             [                                                                                                                                                                                                                                    AGCGGCTACCACATGCTCGACGCCCTCACGTACCGAGCCCACGCGGACGGGGCGTCGTTCTCGTTCGCGCCGTCCAGGCTCAACGCCGCCAAGCGCCTCCGCCTCCTCGCCGCCGACGAGGGCGCCGCGGAGCTGCGCCGCACGGTCGACAGCCTCGGGCGGACGATCGCCGACATGAGGGAGTTCGTCGTCTTCCTCAAGGGCTACCCTCGCATCAGTACTCAGCCTTACAGCATGCACCTGCTCCTCGACAAGCTGATGTTCGGCCGGCAGAAGGAGGTGGAGCAGGTCGTTGGATTCCTGCTGCAGCCGGACGTCTGCGGCGCTGGCGCCGGCGCCGGCGCCGGCGTGCTGCACATAGTTGGCGTCGCGAGGGTCGGGAAGAGCACCCTCGTCGAACACGTCTGCCACGACGAGAGGGTCCGCGGCCGATTCTCCTCCATCGTGTGCTTGAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCTCTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTCGTCGTCGACCTAGCCGAGGACGAGGAGCCCGTGGGCGACGGGGCATGGAGGCGGCTGCGGTCGTCGGCGATGTGCAGGGCGCGGGGGAGCAGGATCATCGTGACGAGCAGGTCGCCGGAGACGGTCCGTGGCATCCCGGCGGCGCGCGCCATCGAGCTCAAGTTCCTCCGCGACGACGTCTACTGGTACTTCTTCAAGGTGCTCGCGTTCGGCAGCGCGAACCCGGACGAACACCCGAGGCTGGCGTCCATCGCCATGGACATCTCCGCGGAGCAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB676322             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ATCTCCGCGGAGCAGAAGGGCGGCTTCATAGGCGCCACCATCGCCAGCAGCCTGATGAGGGCCAACCCGGACGCGCACTACTGGACCCTCATCCTCAAGAACATGAGGGAGTACACGCGGAAGCACCGCGCCATGTTCGGCAAGCACCCGCACGACCTGCTGCGGAACAACCACCCGGTGTACCTGTGGAGGCTGGCCGAGAGCTCCAAGATCTTCCTGTGCCACGGCTTCTACACCGCGTGCCCCGCCAAGCAGGAGATCCCCAGGGTGACGTTCCAGGAGGTGCTGTCCGGTAGGGTGACGCCCCGCGGGAGGTTCGAGGTCCTGGCGTGGACGTCGCAGATACCCCCTTGCCGGAGCTACCTGATGAGCTGCTCGCTGGACACGCCGCCTGGTCCGCACCGTGTCCTTGATAGGAAGAAGCGTCTTAGGCAGCTGGTTACATGAAATGAAGCTGATCATCTCGTTTCATCTTGTCATGGTGTATGTAGATCCGATCCTCTGCAGCGGCTGTGCGCGAAATTGTACATTGCATTAAGTTGTGGTCCCACGTAATGTGTAGTTGAATCAAACTCCTCCGCCTCCCAATGCAACCTGTGGATTGAAACTGTGGCGCCAACAACGAAGTTGCGCCAAATAGCATCCTGCCAT]




>consensus_6715#0
GTGACCGACATGGAGACATTCCTGCCAGCGATCTTGAGCGACCTCCTCGGCAGGTCCATC
TCTTACCTGGTGCAGCGATACCGGCAGCAGAGCACGGTGCAGGACGACCTCGAGAAGCTG
CGCCTCGCGCTGGTCAGGGTGCACGTCACCGTCGAGGAGGCCGAGGCGCGGCACATCACC
AACAAGGCCATGCTCCGGCAGCTCGACGTGCTCAGGGAGGCCATGTACAGCGGCTACCAC
ATGCTCGACGCCCTCACGTACCGAGCCCACGCGGACGGGGCGTCGTTCTCGTTCGCGCCG
TCCAGGCTCAACGCCGCCAAGCGCCTCCGCCTCCTCGCCGCCGACGAGGGCGCCGCGGAG
CTGCGCCGCACGGTCGACAGCCTCGGGCGGACGATCGCCGACATGAGGGAGTTCGTCGTC
TTCCTCAAGGGCTACCCTCGCATCAGTACTCAGCCTTACAGCATGCACCTGCTCCTCGAC
AAGCTGATGTTCGGCCGGCAGAAGGAGGTGGAGCAGGTCGTTGGATTCCTGCTGCAGCCG
GACGTCTGCGGCGCTGGCGCCGGCGCCGGCGCCGGCGTGCTGCACATAGTTGGCGTCGCG
AGGGTCGGGAAGAGCACCCTCGTCGAACACGTCTGCCACGACGAGAGGGTCCGCGGCCGA
TTCTCCTCCATCGTGTGCTTGAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCT
CTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTCGTCGTCGACCTA
GCCGAGGACGAGGAGCCCGTGGGCGACGGGGCATGGAGGCGGCTGCGGTCGTCGGCGATG
TGCAGGGCGCGGGGGAGCAGGATCATCGTGACGAGCAGGTCGCCGGAGACGGTCCGTGGC
ATCCCGGCGGCGCGCGCCATCGAGCTCAAGTTCCTCCGCGACGACGTCTACTGGTACTTC
TTCAAGGTGCTCGCGTTCGGCAGCGCGAACCCGGACGACCACCCGAGGCTGGCGTCCATC
GCCATGGACATCTCCGCGGAGCAGAAGGGCGGCTTCATAGGCGCCACCATCGCCAGCAGC
CTGATGAGGGCCAACCCGGACGCGCACTACTGGACCCTCATCCTCAAGAACATGAGGGAG
TACACGCGGAAGCACCGCGCCATGTTCGGCAAGCACCCGCACGACCTGCTGCGGAACAAC
CACCCGGTGTACCTGTGGAGGCTGGCCGAGAGCTCCAAGATCTTCCTGTGCCACGGCTTC
TACACCGCGTGCCCCGCCAAGCAGGAGATCCCCAGGGTGACGTTCCAGGAGGTGCTGTCC
GGTAGGGTGACGCCCCGCGGGAGGTTCGAGGTCCTGGCGTGGACGTCGCAGATACCCCCT
TGCCGGAGCTACCTGATGAGCTGCTCGCTGGACACGCCGCCTGGTCCGCACCGTGTCCTT
GATAGGAAGAAGCGTCTTAGGCAGCTGGTTACATGAAATGAAGCTGATCATCTCGTTTCA
TCTTGTCATGGTGTATGTAGATCCGATCCTCTGCAGCGGCTGTGCGCGAAATTGTACATT
GCATTAAGTTGTGGTCCCACGTAATGTGTAGTTGAATCAAACTCCTCCGCCTCCCAATGC
AACCTGTGGATTGAAACTGTGGCGCCAACAACGAAGTTGCGCCAAATAGCATCCTGCCAT

consensusID : consensus_6715#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [CGAGGTHGTTRGATTCCTGCTGCAGCCGGACGTCTGHAGCGCTGGCGCSGCGCCGGCSGGTGCGCTTGCACATAGTTGGCGTCGCGAGGGTCGGGAAGAGCACCCTHGTCGAACACGTCTGCCACGACGAGAGGGTCCVHRGCCGWTTYTCCTCCATCGTGTGYTTTAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCTCTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTHGTCGTCGACCTAGCCGAGGACGAGGAGCCCGTWG]

[+] EMBL AA754293             [CGAGGTHGTTRGATTCCTGCTGCAGCCGGACGTCTGHAGCGCTGGCGCSGCGCCGGCSGGTGCGCTTGCACATAGTTGGCGTCGCGAGGGTCGGGAAGAGCACCCTHGTCGAACACGTCTGCCACGACGAGAGGGTCCVHRGCCGWTTYTCCTCCATCGTGTGYTTTAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCTCTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTHGTCGTCGACCTAGCCGAGGACGAGGAGCCCGTWG]




>consensus_6715#1
CGAGGTHGTTRGATTCCTGCTGCAGCCGGACGTCTGHAGCGCTGGCGCSGCGCCGGCSGG
TGCGCTTGCACATAGTTGGCGTCGCGAGGGTCGGGAAGAGCACCCTHGTCGAACACGTCT
GCCACGACGAGAGGGTCCVHRGCCGWTTYTCCTCCATCGTGTGYTTTAGCCGAGAAGACC
TTGAGGACATGGGAGACCATCGTGCTCTGACCGTCAAGCACGGCAGCCATGCCTCCCACG
GGAGCTCGCTCGTHGTCGTCGACCTAGCCGAGGACGAGGAGCCCGTWG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6715#0      GTGACCGACATGGAGACATTCCTGCCAGCGATCTTGAGCGACCTCCTCGGCAGGTCCATC 60
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      TCTTACCTGGTGCAGCGATACCGGCAGCAGAGCACGGTGCAGGACGACCTCGAGAAGCTG 120
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      CGCCTCGCGCTGGTCAGGGTGCACGTCACCGTCGAGGAGGCCGAGGCGCGGCACATCACC 180
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      AACAAGGCCATGCTCCGGCAGCTCGACGTGCTCAGGGAGGCCATGTACAGCGGCTACCAC 240
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      ATGCTCGACGCCCTCACGTACCGAGCCCACGCGGACGGGGCGTCGTTCTCGTTCGCGCCG 300
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      TCCAGGCTCAACGCCGCCAAGCGCCTCCGCCTCCTCGCCGCCGACGAGGGCGCCGCGGAG 360
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      CTGCGCCGCACGGTCGACAGCCTCGGGCGGACGATCGCCGACATGAGGGAGTTCGTCGTC 420
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      TTCCTCAAGGGCTACCCTCGCATCAGTACTCAGCCTTACAGCATGCACCTGCTCCTCGAC 480
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      AAGCTGATGTTCGGCCGGCAGAAGGAGGTGGAGCAGGTCGTTGGATTCCTGCTGCAGCCG 540
consensus_6715#1      --------------------------------CGAGGTHGTTRGATTCCTGCTGCAGCCG 28
                                                        **** *** *****************

consensus_6715#0      GACGTCTGCGGCGCTGGCGCCGGCGCCGGCGCCGGCGTGCTGCACATAGTTGGCGTCGCG 600
consensus_6715#1      GACGTCTGHAGCGCTGGCGCSG-CGCCGGCSGGTGCGC-TTGCACATAGTTGGCGTCGCG 86
                      ********  ********** * *******    ***   ********************

consensus_6715#0      AGGGTCGGGAAGAGCACCCTCGTCGAACACGTCTGCCACGACGAGAGGGTCCGCGGCCGA 660
consensus_6715#1      AGGGTCGGGAAGAGCACCCTHGTCGAACACGTCTGCCACGACGAGAGGGTCCVHRGCCGW 146
                      ******************** *******************************   **** 

consensus_6715#0      TTCTCCTCCATCGTGTGCTTGAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCT 720
consensus_6715#1      TTYTCCTCCATCGTGTGYTTTAGCCGAGAAGACCTTGAGGACATGGGAGACCATCGTGCT 206
                      ** ************** ** ***************************************

consensus_6715#0      CTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTCGTCGTCGACCTA 780
consensus_6715#1      CTGACCGTCAAGCACGGCAGCCATGCCTCCCACGGGAGCTCGCTCGTHGTCGTCGACCTA 266
                      *********************************************** ************

consensus_6715#0      GCCGAGGACGAGGAGCCCGTGGGCGACGGGGCATGGAGGCGGCTGCGGTCGTCGGCGATG 840
consensus_6715#1      GCCGAGGACGAGGAGCCCGTWG-------------------------------------- 288
                      ******************** *                                      

consensus_6715#0      TGCAGGGCGCGGGGGAGCAGGATCATCGTGACGAGCAGGTCGCCGGAGACGGTCCGTGGC 900
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      ATCCCGGCGGCGCGCGCCATCGAGCTCAAGTTCCTCCGCGACGACGTCTACTGGTACTTC 960
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      TTCAAGGTGCTCGCGTTCGGCAGCGCGAACCCGGACGACCACCCGAGGCTGGCGTCCATC 1020
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      GCCATGGACATCTCCGCGGAGCAGAAGGGCGGCTTCATAGGCGCCACCATCGCCAGCAGC 1080
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      CTGATGAGGGCCAACCCGGACGCGCACTACTGGACCCTCATCCTCAAGAACATGAGGGAG 1140
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      TACACGCGGAAGCACCGCGCCATGTTCGGCAAGCACCCGCACGACCTGCTGCGGAACAAC 1200
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      CACCCGGTGTACCTGTGGAGGCTGGCCGAGAGCTCCAAGATCTTCCTGTGCCACGGCTTC 1260
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      TACACCGCGTGCCCCGCCAAGCAGGAGATCCCCAGGGTGACGTTCCAGGAGGTGCTGTCC 1320
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      GGTAGGGTGACGCCCCGCGGGAGGTTCGAGGTCCTGGCGTGGACGTCGCAGATACCCCCT 1380
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      TGCCGGAGCTACCTGATGAGCTGCTCGCTGGACACGCCGCCTGGTCCGCACCGTGTCCTT 1440
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      GATAGGAAGAAGCGTCTTAGGCAGCTGGTTACATGAAATGAAGCTGATCATCTCGTTTCA 1500
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      TCTTGTCATGGTGTATGTAGATCCGATCCTCTGCAGCGGCTGTGCGCGAAATTGTACATT 1560
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      GCATTAAGTTGTGGTCCCACGTAATGTGTAGTTGAATCAAACTCCTCCGCCTCCCAATGC 1620
consensus_6715#1      ------------------------------------------------------------
                                                                                  

consensus_6715#0      AACCTGTGGATTGAAACTGTGGCGCCAACAACGAAGTTGCGCCAAATAGCATCCTGCCAT 1680
consensus_6715#1      ------------------------------------------------------------