These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1060 fasta sequence [TGCCGCTGAGGAGGAGGAGGAGGCGCTACTAATCCTCTCCGCCCGCCGCGCCGAGGGGATCTTGGATCGACGAGGAGGGGGAGGGGAGCAGATGCGGGCGAGCCGGCCGGTGGTGCACCCGGTGGAGGCGCCGCCGCCGGCAGCTTTGGCGGTGGCGGCGGCGGCGGTGGCGGTGGAGGCCGGGGTTGGAGCAGGAGGTGGAGCGGCGGCGCATGGCGGGGAGAACGCGCAGCCACGAGGGGTGCGGATGAAGGACCCCCCCGGGGCGCCCGGGACGCCCGGCGGCCTCGGCCTCCGCCTCGTGCAGGCCTTCTTCGCCGCCGCCGCGCTCGCCGTCATGGCCTCCACCGACGACTTCCCCTCCGTCTCCGCCTTCTGTTACCTTGTTGCAGCAGCCATCTTGCAATGCTTGTGGAGCCTTTCACTAGCCGTTGTTGATATTTATGCACTTCTTGTGAAGCGTTCTTTGCGGAATCCACAGGCTGTGTGTATATTTACCATCGGAGATGGGATCACAGGGACACTAACCCTAGGTGCAGCATGTGCATCA-GCAGGCATCACCGTGCTCATTGGCA-ATGACCTGAACATATG-CGCAAACCATCACTGTGCAAGTTTCGAAACTGCAACCGCGATGGCTTTCATCAGCTGGTTTGCACTTGCACCGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCA-GATGAGGACACA-GCTTGTATTTAGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCAACAGCCA-GGAGAAAACGTAGTGCAGCTAATTATACTACGACCCAGTTGATGAATGCCTGTGTAATGAAATTTGGTGTCGAATTGTTTGTACAAAATAGGGGATAGTTTGTTCTGCCAGAGGGTGGTTGTGAAGCTCTGCA--TTTTTTTTTTTTTGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGTGATCTGAAAACACAGAGCTCAACGTGCCGATTTGTTATGTCATTTTATTATTCTGATGTGATCTTCATTCCCGAGAAATATGCAGTTCACCTTTTGCATCAAAAAAAAAA] [+] EMBL AK108244 [TGCCGCTGAGGAGGAGGAGGAGGCGCTACTAATCCTCTCCGCCCGCCGCGCCGAGGGGATCTTGGATCGACGAGGAGGGGGAGGGGAGCAGATGCGGGCGAGCCGGCCGGTGGTGCACCCGGTGGAGGCGCCGCCGCCGGCAGCTTTGGCGGTGGCGGCGGCGGCGGTGGCGGTGGAGGCCGGGGTTGGAGCAGGAGGTGGAGCGGCGGCGCATGGCGGGGAGAACGCGCAGCCACGAGGGGTGCGGATGAAGGACCCCCCCGGGGCGCCCGGGACGCCCGGCGGCCTCGGCCTCCGCCTCGTGCAGGCCTTCTTCGCCGCCGCCGCGCTCGCCGTCATGGCCTCCACCGACGACTTCCCCTCCGTCTCCGCCTTCTGTTACCTTGTTGCAGCAGCCATCTTGCAATGCTTGTGGAGCCTTTCACTAGCCGTTGTTGATATTTATGCACTTCTTGTGAAGCGTTCTTTGCGGAATCCACAGGCTGTGTGTATATTTACCATCGGAGATGGGATCACAGGGACACTAACCCTAGGTGCAGCATGTGCATCA GCAGGCATCACCGTGCTCATTGGCA ATGACCTGAACATATG CGCAAACAATCACTGTGCAAGTTTCGAAACTGCAACCGCGATGGCTTTCATCAGCTGGTTTGCACTTGCACCGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCA GATGAGGACACA GCTTGTATTTAGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCAACAGCCA GGAGAAAACGTAGTGCAGCTAATTATACTACGACCAAGTTGATGAATGCCTGTGTAATGAAATTTGGTGTCGAATTGTTTGTACAAAATAGGGGATAGTTTGTTCTGCAAGAGGGTGGTTGTGAAGCTCTGCA ATTTTTTTTTTTTGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGTGATCTGAAAACACAGAGCTCAACGTGCCGATTTGTTATGTCATTTTATTATTCTGATGTGATCTTCATTCCCGAGAAATATGCAGTT ] [+] EMBL BI808259 [ CCCTAGGTGCAGCATGTGCATCA GCAGGCATCACCGTGCTCATTGGCACATGACCTGAACATATG C CCAACCATCACTGTGCAAGTTTCGAAACTGCAACCGCGATGGCTTTCATCAGCTGGTTTGCACTTGCACCGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCACGATGAGGACACACGCTTGTATTTAGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCCACAGCCA GGAGAAAACGTAGTGCAGCTAATTATACTACGACCCAGTTGATGAATGCCTGTGTAATGAAATTTGGTGTCGAATTGTTTGTAC CATAGGGGATAGTTTGTTCTGCCAGAGGGTGGTTGTGAAGCTCTGCT TTTTTTTTTTTTTGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGTGATCTGAAAACACAGAGCTCAACGTGCCGATTTGTTATGTCATTTTATTATTCTGATGTGATCTTCATTCCCGAGAAATATGCAGTTCACCTTTTGCATCAAAAAAAAAA] [+] EMBL BI805074 [ ATCACGCAGGCATCACCGTGCTCATT GCC ATGACCTGAACATATGCCGC AACCATC CTGTGCAAGTTTCGAAACTGCAACCGCGATGGCTTTCATCAGCTGGTTTGCACTTGCACCGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCA GATGAGGACACA GCTTGTATTTAGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGC ACAGCCACGGAGAAAACGTAGTGCAGCTAATTATACTACGACCCAGTTGATGAATGCCTGTGTAATGAAATTTGGTGTCGAATTGTTTGTACCAAATAGGGGATAGTTTGTTCTGCCAGAGGGTGGTTGTGAAGCTCTGCATTTTTTTTTTTTTTTGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGTGATCTGAAAACACAGAGCTCAACGTGCCGATTTGTTATGTCATTTTATTATTTTGATGTGATCTTCATTCCCGAGAAAaaaaaaa ] consensusID : consensus_6717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [GANNGTGCCGAATTCGGCACGAGCTTTCATCAGCTGGTTTGCACTTGCACNGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCANATGAGGACACAGCTTGTATTTAGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCAACAGCCAGGAGAAAACGTAATGCAGCTAATTATACTACGACCAAGTTGATGAATGCCTGTGTAATGAAATTTGGTGTCNAATTGTTTGTACAAAATAGGGGATAGTTTGTTCTGCAAGAGGGTGGTTGTGAAGCTCTGCAATTTTTTTTTTTTTTTTTTTTTCGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGTGATCTGAAAACACANAGCTCAACGTGCCNATTT] [+] EMBL BE229848 [GANNGTGCCGAATTCGGCACGAGCTTTCATCAGCTGGTTTGCACTTGCACNGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCANATGAGGACACAGCTTGTATTTAGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCAACAGCCAGGAGAAAACGTAATGCAGCTAATTATACTACGACCAAGTTGATGAATGCCTGTGTAATGAAATTTGGTGTCNAATTGTTTGTACAAAATAGGGGATAGTTTGTTCTGCAAGAGGGTGGTTGTGAAGCTCTGCAATTTTTTTTTTTTTTTTTTTTTCGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGTGATCTGAAAACACANAGCTCAACGTGCCNATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6717#0 TGCCGCTGAGGAGGAGGAGGAGGCGCTACTAATCCTCTCCGCCCGCCGCGCCGAGGGGAT 60 consensus_6717#1 ------------------------------------------------------------ consensus_6717#0 CTTGGATCGACGAGGAGGGGGAGGGGAGCAGATGCGGGCGAGCCGGCCGGTGGTGCACCC 120 consensus_6717#1 ------------------------------------------------------------ consensus_6717#0 GGTGGAGGCGCCGCCGCCGGCAGCTTTGGCGGTGGCGGCGGCGGCGGTGGCGGTGGAGGC 180 consensus_6717#1 ------------------------------------------------------------ consensus_6717#0 CGGGGTTGGAGCAGGAGGTGGAGCGGCGGCGCATGGCGGGGAGAACGCGCAGCCACGAGG 240 consensus_6717#1 ------------------------------------------------------------ consensus_6717#0 GGTGCGGATGAAGGACCCCCCCGGGGCGCCCGGGACGCCCGGCGGCCTCGGCCTCCGCCT 300 consensus_6717#1 ------------------------------------------------------------ consensus_6717#0 CGTGCAGGCCTTCTTCGCCGCCGCCGCGCTCGCCGTCATGGCCTCCACCGACGACTTCCC 360 consensus_6717#1 ------------------------------------------------------------ consensus_6717#0 CTCCGTCTCCGCCTTCTGTTACCTTGTTGCAGCAGCCATCTTGCAATGCTTGTGGAGCCT 420 consensus_6717#1 ------------------------------------------------------------ consensus_6717#0 TTCACTAGCCGTTGTTGATATTTATGCACTTCTTGTGAAGCGTTCTTTGCGGAATCCACA 480 consensus_6717#1 ------------------------------------------------------------ consensus_6717#0 GGCTGTGTGTATATTTACCATCGGAGATGGGATCACAGGGACACTAACCCTAGGTGCAGC 540 consensus_6717#1 ------------------------------------------------------------ consensus_6717#0 ATGTGCATCAGCAGGCATCACCGTGCTCATTGGCAATGACCTGAACATATGCGCAAACCA 600 consensus_6717#1 ------------------------------------------------------------ consensus_6717#0 TCACTGTGCAAGTTTCGAAACTGCAACCGCGATGGCTTTCATCAGCTGGTTTGCACTTGC 660 consensus_6717#1 -------GANNGTGCCGAATTCG-----GCACGAGCTTTCATCAGCTGGTTTGCACTTGC 48 * ** **** * ** ************************** consensus_6717#0 ACCGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCAGATGAGGACACAGCTTGTATTT 720 consensus_6717#1 ACNGTCCTGCGTCTTGAACTTCTGGTCGATGGCCTCCANATGAGGACACAGCTTGTATTT 108 ** *********************************** ********************* consensus_6717#0 AGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCAACAGCCAGGAGAAAACG 780 consensus_6717#1 AGACATAATTTTGGGCTGTTTGTCAGCCAGATCACTCGGTGCAACAGCCAGGAGAAAACG 168 ************************************************************ consensus_6717#0 TAGTGCAGCTAATTATACTACGACCCAGTTGATGAATGCCTGTGTAATGAAATTTGGTGT 840 consensus_6717#1 TAATGCAGCTAATTATACTACGACCAAGTTGATGAATGCCTGTGTAATGAAATTTGGTGT 228 ** ********************** ********************************** consensus_6717#0 CGAATTGTTTGTACAAAATAGGGGATAGTTTGTTCTGCCAGAGGGTGGTTGTGAAGCTCT 900 consensus_6717#1 CNAATTGTTTGTACAAAATAGGGGATAGTTTGTTCTGCAAGAGGGTGGTTGTGAAGCTCT 288 * ************************************ ********************* consensus_6717#0 GCA----------TTTTTTTTTTTTTGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGT 950 consensus_6717#1 GCAATTTTTTTTTTTTTTTTTTTTTCGAAAACGGCATGTTTCTTGTAAGAAGCTTTTTGT 348 *** ************ ********************************** consensus_6717#0 GATCTGAAAACACAGAGCTCAACGTGCCGATTTGTTATGTCATTTTATTATTCTGATGTG 1010 consensus_6717#1 GATCTGAAAACACANAGCTCAACGTGCCNATTT--------------------------- 381 ************** ************* **** consensus_6717#0 ATCTTCATTCCCGAGAAATATGCAGTTCACCTTTTGCATCAAAAAAAAAA 1060 consensus_6717#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||