These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6723#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 3139 fasta sequence [CGCGCCGCCGCCGCCGCCGCAGCAAAACCCTAGCCTCCGCCGCCGTCGTTCCCTCCCGCCGCCTCGCGATGGCTTCGTCGCAGGGCCTCAAGAAGAACTACCGCTGCGACCGCTCGCTGCAGCAGTTCTACACGGGCGGGCCGTTCGCCGTCGGGAGCTCTCCCGGAGGCGGCGAAGGCGAAGTCGAAGGAGGCGAGGCCGAGGCCGAGGCGTTCCTCGCGTGCGCCTGCGGCGGGGAGGTGCGCCTGGTGTCCGCCGCCGACGCGTCCGCCATCGGGGAGCCGATCGAGGGCGAAAACGAGGCCGTCACGGCGCTCGCGCTGTCCCCCGACTCCCGCCTCCTCTTCACCGCGGGGCACAGTAGGCTTATTCGAGTCTGGGACCTCGCGTCCCGCACTTGCACACGCAGCTGGAAGGGGCACGATGGTCCTATTAGGGCCATGGCCTGCCATGCTTCTGGTGGGTTGCTTGCAACTGCTGGAGCAGACAAAAAGGTGTGCGTTTGGGATGTTGATGGTGGGTTTTGCACACATTTCTTTAGAGGCCACGCAGGTGTTGTGACGACTGTTATGTTCCACAAAGATCCGAAGCGCCTTCTGCTATTTTCTGGAAGTGAAGATGCCACTGTGAGAGTTTGGAACCTTGAAAGCAAAAAGTGTGTCGCTGTGCTGAAAGAGCATTTTTCAGCTGTGACATCATTAGCCTTATCTGAAGATGGACAAACATTGCTTAGTGCTGGGCGGGATAAGATTGTGAATGTGTGGGATGTTCGTAAGTACAACTCAAAGAAGACAATACCAGCATTTGAAATGATAGAAGATGTTTCCTTCATTGGACCAGGAAGTAATTTATTGTCTTGTTTGGGTGAACCGGCAAATATAAAACGCAAAACAGATGGTTATTTTCTTACGGTTGGTGAACGTGGAGTAGTTCGCATCTGGTGCTTGGAAAGTGCTCAGTGTATATATGAGCAGCAATCATCCGATGTAACCGTTAACACAGAGAATGAGGAGTCTAGAAGGGGTTTTACTTCTGCTGTTATGTTGTCAGATGATCAAGGACTGCTATGTGCCACTGCCGATCAGCAGTTTTTGTTCTACTGTCCCACGAGAACTGACGGAGGGGACTTCCAGCTGAACTTATATAAACGCCTAGTAGGTTATAATGATGAGATTCTTGATTTGAAGTTTGTTGGGGAGGATGAACAATATCTTGCTGTAGCTACTAACTTGGAGCAGGTCCGTGTTTATGACGTTGCATCGATGTCATGTTCTTATGTGCTGTCTGGCCACACTGAAATTGTTGTTTGCATCGACACTTGTATTTCTTCTTCTGGGAAGACACTTGTTGTGACTGGGAGCAAAGATAGCACTGTGAGACTCTGGGATATGGAAAGGAGAAGCTGCATTGGTATTGGTAAAGGTCATCTGGGAGCTATTGGTTCCGTTGCATTCTCAAAGAAATCTAAGAATTTTTTTGTTAGTGGAAGCAGTGATCGGACCATCAAGATATGGAGCTGGGATGATACACTTGATGATGTTGGCAGTGAAGTTCCTCTCAAAGCAAAAGCTGTTGTAGCTGCACATGACAAAGATATTAATTCTCTTTCTGTCTCGCCTAATGACGGTCTTGTTTGCAGTGGTTCTGAGGACCGTACTGCATGCATATGGAAACTTCCAAACTTAGTGCCCTCTGTTGTCCTTAAAGGGCATAAAAGGGGCATTTGGTCAGTCGAGTTTTCTCCTGTGGAGCAGTGTGTCATTACATCATCTGGTGACAGAACAGTCAAAATATGGGCTGTTGCTGATGGTTCATGCTTGAAGACATTTGAGGGCCATACATCTAGTGTTTTACGAGCCTCATTCCTTTCACACGGGACCCAATTTGTTTCTTGTGGAAGCGATGGCCTTGTTAAGCTATGGACCATCAAAACAAATGAATGCATTGCTACTTTCGATAAGCATGATGGGAAGGTTTGGGCACTGGCTGTTGGCAAGAAAACTGAAATGCTTGCTACTGGCGGAACTGATGCTGTTCTTAACCTTTGGCATGACTGTACCATGGAAGATAAACAGGAAGATTTTCGTAAAAAGGAGGAGGAACTGTTGAGAGGTCAGGAATTAGAAAATGCAGTATCAGATTATGACTATGCAAAAGCAATACAACTTGCATTTGAGCTTAGAAGACCCCACAGGCTTCTTGAGTTATTCACACAGCTTTGCAGGGAGTCTGATCTGGAGGACCCAATAGAAAAAGCCCTTATTGGTCTTCCAAAGGAAGGGCTTCGCGTACTTCTTGAGTATATCCGGGAATGGAACACAAAACCTAAGCTTTGTCATGTTGCACAGTTTGTGCCTTTTCGGGTATTGAGGAGCTTGCCTCCCACTGATATCCTGGAGATAAAGGGCATCAGTGAGCTCCTTGAGGGACTTATTCCATATTCACAGAGGCATTTCAGCAGAGTTGATAGACTAGTACGAAGCACATTTTTATTGGATTACACCTTGACCCGGATGTCTGTTGTAGATCCGGACATAGATGAGGGCACAACCAGAGATGACGCAAATGGCTCATCAGTAGAGAATTGTGAAATTGCACAGGCGAAGCCTGATGCATTGGTAGCAGAAGAGAACTTGCAAAAGTCGGTAAAGAAAAGAAAATCAAGCAAATCAAGCAAAAAAGGCGGTAAGAAGGTGAAGATTGCGTCCACGGGGGGCAGTAAGGATGTTCCTATTGAGGCTTAAATAGTTGACAAA-CCGCAGTTATATGTTATTCGCACCACCAATTTTGTAGCTGCTGTTTTATCTGGTATGTTGCAGCATGAATCACATGTTTTACCTTTTGACCCACTGTACAGAATGCATTCTTTGCTTGAGTTAGAAAGATCTGGTGGCTTTCAGTTCTAAATTTCTAAGTGCTTCAGAAAGTTTTACCGTCCTTGATAGTTGTTGCCATCTTCTGCGTTGGGTACTTGGGTTAGTTTGCCTTGATTAATTTCCATGTGTGTGTATGGCAGTGGCACGGAAGCGGTACCCAGCAGCAAATAAAGTTGCTTGCTCCACTTGTAATTGTTGGATCTGCGATCTGGATGTCGGCTCTCTTCATAATTCCCGTCCTTGTCATCTGGCAGAAATTTTTT] [+] EMBL AK101611 [CGCGCCGCCGCCGCCGCCGCAGCAAAACCCTAGCCTCCGCCGCCGTCGTTCCCTCCCGCCGCCTCGCGATGGCTTCGTCGCAGGGCCTCAAGAAGAACTACCGCTGCGACCGCTCGCTGCAGCAGTTCTACACGGGCGGGCCGTTCGCCGTCGGGAGCTCTCCCGGAGGCGGCGAAGGCGAAGTCGAAGGAGGCGAGGCCGAGGCCGAGGCGTTCCTCGCGTGCGCCTGCGGCGGGGAGGTGCGCCTGGTGTCCGCCGCCGACGCGTCCGCCATCGGGGAGCCGATCGAGGGCGAAAACGAGGCCGTCACGGCGCTCGCGCTGTCCCCCGACTCCCGCCTCCTCTTCACCGCGGGGCACAGTAGGCTTATTCGAGTCTGGGACCTCGCGTCCCGCACTTGCACACGCAGCTGGAAGGGGCACGATGGTCCTATTAGGGCCATGGCCTGCCATGCTTCTGGTGGGTTGCTTGCAACTGCTGGAGCAGACAAAAAGGTGTGCGTTTGGGATGTTGATGGTGGGTTTTGCACACATTTCTTTAGAGGCCACGCAGGTGTTGTGACGACTGTTATGTTCCACAAAGATCCGAAGCGCCTTCTGCTATTTTCTGGAAGTGAAGATGCCACTGTGAGAGTTTGGAACCTTGAAAGCAAAAAGTGTGTCGCTGTGCTGAAAGAGCATTTTTCAGCTGTGACATCATTAGCCTTATCTGAAGATGGACAAACATTGCTTAGTGCTGGGCGGGATAAGATTGTGAATGTGTGGGATGTTCGTAAGTACAACTCAAAGAAGACAATACCAGCATTTGAAATGATAGAAGATGTTTCCTTCATTGGACCAGGAAGTAATTTATTGTCTTGTTTGGGTGAACCGGCAAATATAAAACGCAAAACAGATGGTTATTTTCTTACGGTTGGTGAACGTGGAGTAGTTCGCATCTGGTGCTTGGAAAGTGCTCAGTGTATATATGAGCAGCAATCATCCGATGTAACCGTTAACACAGAGAATGAGGAGTCTAGAAGGGGTTTTACTTCTGCTGTTATGTTGTCAGATGATCAAGGACTGCTATGTGCCACTGCCGATCAGCAGTTTTTGTTCTACTGTCCCACGAGAACTGACGGAGGGGACTTCCAGCTGAACTTATATAAACGCCTAGTAGGTTATAATGATGAGATTCTTGATTTGAAGTTTGTTGGGGAGGATGAACAATATCTTGCTGTAGCTACTAACTTGGAGCAGGTCCGTGTTTATGACGTTGCATCGATGTCATGTTCTTATGTGCTGTCTGGCCACACTGAAATTGTTGTTTGCATCGACACTTGTATTTCTTCTTCTGGGAAGACACTTGTTGTGACTGGGAGCAAAGATAGCACTGTGAGACTCTGGGATATGGAAAGGAGAAGCTGCATTGGTATTGGTAAAGGTCATCTGGGAGCTATTGGTTCCGTTGCATTCTCAAAGAAATCTAAGAATTTTTTTGTTAGTGGAAGCAGTGATCGGACCATCAAGATATGGAGCTGGGATGATACACTTGATGATGTTGGCAGTGAAGTTCCTCTCAAAGCAAAAGCTGTTGTAGCTGCACATGACAAAGATATTAATTCTCTTTCTGTCTCGCCTAATGACGGTCTTGTTTGCAGTGGTTCTGAGGACCGTACTGCATGCATATGGAAACTTCCAAACTTAGTGCCCTCTGTTGTCCTTAAAGGGCATAAAAGGGGCATTTGGTCAGTCGAGTTTTCTCCTGTGGAGCAGTGTGTCATTACATCATCTGGTGACAGAACAGTCAAAATATGGGCTGTTGCTGATGGTTCATGCTTGAAGACATTTGAGGGCCATACATCTAGTGTTTTACGAGCCTCATTCCTTTCACACGGGACCCAATTTGTTTCTTGTGGAAGCGATGGCCTTGTTAAGCTATGGACCATCAAAACAAATGAATGCATTGCTACTTTCGATAAGCATGATGGGAAGGTTTGGGCACTGGCTGTTGGCAAGAAAACTGAAATGCTTGCTACTGGCGGAACTGATGCTGTTCTTAACCTTTGGCATGACTGTACCATGGAAGATAAACAGGAAGATTTTCGTAAAAAGGAGGAGGAACTGTTGAGAGGTCAGGAATTAGAAAATGCAGTATCAGATTATGACTATGCAAAAGCAATACAACTTGCATTTGAGCTTAGAAGACCCCACAGGCTTCTTGAGTTATTCACACAGCTTTGCAGGGAGTCTGATCTGGAGGACCCAATAGAAAAAGCCCTTATTGGTCTTCCAAAGGAAGGGCTTCGCGTACTTCTTGAGTATATCCGGGAATGGAACACAAAACCTAAGCTTTGTCATGTTGCACAGTTTGTGCTTTTTCGGGTATTGAGGAGCTTGCCTCCCACTGATATCCTGGAGATAAAGGGCATCAGTGAGCTCCTTGAGGGACTTATTCCATATTCACAGAGGCATTTCAGCAGAGTTGATAGACTAGTACGAAGCACATTTTTATTGGATTACACCTTGACCCGGATGTCTGTTGTAGATCCGGACATAGATGAGGGCACAACCAGAGATGACGCAAATGGCTCATCAGTAGAGAATTGTGAAATTGCACAGGCGAAGCCTGATGCATTGGTAGCAGAAGAGAACTTGCAAAAGTCGGTAAAGAAAAGAAAATCAAGCAAATCAAGCAAAAAAGGCGGTAAGAAGGTGAAGATTGCGTCCACGGGGGGCAGTAAGGATGTTCCTATTGAGGCTTAAATAGTTGACAAA CCGCAGTTATATGTTATTCGCACCACCAATTTTGTAGCTGCTGTTTTATCTGGTATGTTGCAGCATGAATCACATGTTTTACCTTTTGACCCACTGTACAGAATGCATTCTTTGCTTGAGTTAGAAAGATCTGGTGGCTTTCAGTTCTAAATTTCTAAGTGCTTCAGAAAGTTTTACCGTCCTTGATAGTTGTTGCCATCTTCTGCGTTGGGTACTTGGGTTAGTTTGCCTTGATTAATTTCCATGTGTGTGTATGGCAGTGGCACGGAAGCGGTACCCAGCAGCAAATAAAGTTGCTTGCTCCACTTGTAATTGTTGGATCTGCGATCTGGATGTCGGCTCTCTTCATAATTCCCGTCCTTGTCATCTGGCAGAAATTTTTT] [+] EMBL CB685470 [ ccctttAAGCAAAAGCTGTTGTAGCTGCACATGACAAAGATATTAATTCTCTTTCTGTCTCGCCTAATGACGGTCTTGTTTGCAGTGGTTCTGAGGACCGTACTGCATGCATATGGAAACTTCCAAACTTAGTGCCCTCTGTTGTCCTTAAAGGGCATAAAAGGGGCATTTGGTCAGTCGAGTTTTCTCCTGTGGAGCAGTGTGTCATTACATCATCTGGTGACAGAACAGTCAAAATATGGGCTGTTGCTGATGGTTCATGCTTGAAGACATTTGAGGGCCATACATCTAGTGTTTTACGAGCCTCATTCCTTTCACACGGGACCCAATTTGTTTCTTGTGGAAGCGATGGCCTTGTTAAGCTATGGACCATCAAAACAAATGAATGCATTGCTACTTTCGATAAGCATGATGGGAAGGTTTGGGCACTGGCTGTTGGCAAGAAAACTGAAATGCTTGCTACTGGCGGAACTGATGCTGTTCTTAACCTTTGGCATGACTGTACCATGGAAGATAAACAGGAAGATTTTCGTAAAAAGGAGGAGGAACTGTTGAGAGGTCAGGAATTAGAAAATGCAGTATCAGATTATGACTATGCAAAAGCAATACAACTTGCATTTGAGCTTAGAAGACCCCACAGGCTTCTTGAGTTATTCACACAGCTTTGCAGGGAGTCTGATCTGGAGGACCCA ] [-] EMBL CB684481 [ AAAATGCAGTATCAGATTATGACTATGCAAAAGCAATACAACTTGCATTTGAGCTTAGAAGACCCCACAGGCTTCTTGAGTTATTCACACAGCTTTGCAGGGAGTCTGATCTGGAGGACCCAATAGAAAAAGCCCTTATTGGTCTTCCAAAGGAAGGGCTTCGCGTACTTCTTGAGTATATCCGGGAATGGAACACAAAACCTAAGCTTTGTCATGTTGCACAGTTTGTGCCTTTTCGGGTATTGAGGAGCTTGCCTCCCACTGATATCCTGGAGATAAAGGGCATCAGTGAGCTCCTTGAGGGACTTATTCCATATTCACAGAGGCATTTCAGCAGAGTTGATAGACTAGTACGAAGCACATTTTTATTGGATTACACCTTGACCCGGATGTCTGTTGTAGATCCGGACATAGATGAGGGCACAACCAGAGATGACGCAAATGGCTCATCAGTAGAGAATTGTGAAATTGCACAGGCGAAGCCTGATGCATTGGTAGCAGAAGAGAACTTGCAAAAGTCGGTAAAGAAAAGAAAATCAAGCAAATCAAGCAAAAAAGGCGGTAAGAAGGTGAAGATTGCGTCCACGGGGGGCAGTAAGGATGTTCCTATTGAGGCTTAAATAGTTGACAAA CCGCAGTTATATGTTATTCGCACCACCAATTTTGTAGCTGCTGTTTTATCTGGTATGTTGCAGCATGAATCACATGTTTTACCTTTTGACCCACTGTACAGAATGCATTCTTTGCTTGAGTTAGAAAGATCTGGTGGCT ] [-] EMBL CB685471 [ CCAAAGGAAGGGCTTCGCGTACTTCTTGAGTATATCCGGGAATGGAACACAAAGCCTAAGCTTTGTCATGTTGCACAGTTTGTGCCTTTTCGGGTATTGAGGAGCTTGCCTCCCACTGATATCCTGGAGATAAAGGGCATCAGTGAGCTCCTTGAGGGACTTATTCCATATTCACAGAGGCATTTCAGCAGAGTTGATAGAATAGTATGAAGCACATTTTTATTGGATTACACCTTGACCCGGATGTCTGTTGTAGATCCGGACATAGATGAGGGCACAACCAGAGATGACGCAAATGGCTCATCAGTAGAGAATTGTGAAATTGCACAGGCGAAGCCTGATGCATTGGTAGCAGAAGAGAACTTGCAAAAGTCGGTAAAGAAAAGAAAATCAAGCAAATCAAGCAAAAAAGGCGGTAAGAAGGTGAAGATTGCGTCCACGGGGGGCAGTAAGGATGTTCCTATTGAGGCTTAAATAGTTGACAAATACGCAGTTATATGTTATTCGCACCACCAATTTTGTAGCTGCTGTTTTATCTGGTATGTTGCAGCATGAATCACATGTTTTACCTTTTGACCCACTGTACAGAATGCATTCTTTGTTAAAGGGAGAAAGATCTGGTGG ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||