These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [GCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGGTGCTATATGCATTACAACATGAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGCCTGGCCGTAACTAACGGAATCGTGGAAAAAGGGGAAAATTCTTTAAAACCGGAAGAAAAATCCCTTTAAGGGAGGGTAAATTTGAACCTGGGGGAAAAAAGGGAAAAACTGGTTCCCGGGGAAAAATGGTAACCCGTTAAAAATTCCAAAAAAAAAAAAACCGGAAACAAAAAAGGGAAAACCCGGGGGGGCCAAAGAAGGAACCAAACCAAAATAAATGGGGTGGCCCTAAC] [+] EMBL CF327219 [GCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGGTGCTATATGCATTACAACATGAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGCCTGGCCGTAACTAACGGAATCGTGGAAAAAGGGGAAAATTCTTTAAAACCGGAAGAAAAATCCCTTTAAGGGAGGGTAAATTTGAACCTGGGGGAAAAAAGGGAAAAACTGGTTCCCGGGGAAAAATGGTAACCCGTTAAAAATTCCAAAAAAAAAAAAACCGGAAACAAAAAAGGGAAAACCCGGGGGGGCCAAAGAAGGAACCAAACCAAAATAAATGGGGTGGCCCTAAC] consensusID : consensus_673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 329 fasta sequence [TCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTAACAAAAGGGCAAATTCTTTAAAACCGGAAGAACAACCCCTTTAAGGGGGGGTAAATTTGAACCTGGGGGAAAAAAGGGCAAAACTGGTTCCCGGGGAAAAATGGTAACCCGTTAAAATTCCCAAAAAAAAAAAAACCGGAAACCAAAAAGGGAAAACCCGG] [+] EMBL CF316172 [TCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTAACAAAAGGGCAAATTCTTTAAAACCGGAAGAACAACCCCTTTAAGGGGGGGTAAATTTGAACCTGGGGGAAAAAAGGGCAAAACTGGTTCCCGGGGAAAAATGGTAACCCGTTAAAATTCCCAAAAAAAAAAAAACCGGAAACCAAAAAGGGAAAACCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_673#0 GCCGGATGCACTGTGAGAGTGTTGCATATCATAAATAAATGAAGTCTGGTGCTATATGCA 60 consensus_673#1 -----TCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCAT---CT 52 **** * ** ** * * * **** * ** ** * consensus_673#0 TTACAACATGAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 120 consensus_673#1 TAAAGCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 112 * * * * ***** ******************************************** consensus_673#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCGGCCTGGCCGTAACTAACGG 180 consensus_673#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCTTTCCTAAC-- 170 *************************************** * * ** * ***** consensus_673#0 AATCGTGGAAAAAGGGGAAAATTCTTTAAAACCGGAAGAAAAATCCCTTTAAGGGAGGGT 240 consensus_673#1 ----------AAAAGGGCAAATTCTTTAAAACCGGAAGAACAACCCCTTTAAGGGGGGGT 220 *** *** ********************** ** *********** **** consensus_673#0 AAATTTGAACCTGGGGGAAAAAAGGGAAAAACTGGTTCCCGGGGAAAAATGGTAACCCGT 300 consensus_673#1 AAATTTGAACCTGGGGGAAAAAAGGGCAAAACTGGTTCCCGGGGAAAAATGGTAACCCGT 280 ************************** ********************************* consensus_673#0 TAAAAATTCCAAAAAAAAAAAAACCGGAAACAAAAAAGGGAAAACCCGGGGGGGCCAAAG 360 consensus_673#1 TAAAATTCCCAAAAAAAAAAAAACCGGAAACCAAAAAGGGAAAACCCGG----------- 329 ***** * *********************** ***************** consensus_673#0 AAGGAACCAAACCAAAATAAATGGGGTGGCCCTAAC 396 consensus_673#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||