cluster # 6736

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Oryza sativa
cluster # 6736 cluster # 6736 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6736#0 length = 796 sequences # 3

consensus_6736#1 length = 487 sequences # 1

consensusID : consensus_6736#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 796
fasta sequence

                              [TTTTTGAAACAGAAAAGGGGCATAACCCTGGATATTGTACATAATGCTTTTTCA-TTATTACAATAAATAAATAATTTAGGAGAGTATGGTGACTGTACTACTAACTAAATCTCTTGACACAATCACACTGTTCTCAGGGAGAGGGAAAAAAGAGCTAATACATTTTTTATCAACAGTTAAGCTCACTCTTGCTGGAATGGATGTAATCTTCGGGTGATCCGAGTAACCATATTAACAAATAACGTTCACCCTCCGAGTCAATCAAGAAACCGGTATACCGGACAAAAAATAGACAAGATATTACACAAATAATAATCAATCAGTTAAAAGGTCGTTATCTTGATAAGGTTTAGTGGTAGCCTTTTTCTCCAGGGAG-AAGTCACAGACTCACAGTTCACCCTATCACCAAGACCTTCAGTATTTTGCAGCTCATGCTCCAGTACCAACTAGCATAGTCTGGTGCACATCACATCTGCTTCAGCACTTGGGTTTTGCTCTCACATGATAACATACTGTCATGGTGCAGACATGGCTCTGGTTCATATGATGTCCATCTGTGATGTCAGTCTCTGTTATGGCAGGCAATAGTTCTACGACAACCTAGAACCACCGCCCTCCTCCTTTCTTGGTAGCTTTCAGTTCCATCACTAATCGTTCCCGCTGAGCCTCTACCTCTGCATACTGCAAGCTCATGTTGAGTAACCGCTCCTTCATATCTCTTAGCTCTCCTTCTAGTTGCAAAACCCTTTCGTTACTACTCTCATTGCCATTCCCAGCAGCACACTGCCCATCAGGC]

[-] EMBL BM421932             [TTTTTGAAACAGAAAAGGGGCATAACCCTGGATATTGTACATAATGCTTTTTCA TTATTACAATAAATAAATAATTTAGGAGAGTATGGTGACTGTACTACTAACTAAATCTCTTGACACAATCACACTGTTCTCAGGGAGAGGGAAAAAAGAGCTAATACATTTTTTATCAACAGTTAAGCTCACTCTTGCTGGAATGGATGTAATCTTCGGGTGATCCGAGTAACCATATTAACAAATAACGTTCACCCTCCGAGTCAATCAAGAAACCGGTATACCGGACAAAAAATAGACAAGATATTACACAAATAATAATCAATCAGTTAAAAGGTCGTTATCTTGATAAGGTTTAGTGGTAGCCTTTTTCTCCAGGGAG AAGTCACAGACTCACAGTTCACCCTATCACCAAGACCTTCAGTATTTTGCAGCTCATGCTCCAGTACCAACTAGCATAGTCTGGTGCACATCACATCTGCTTCAGCACTTGGGTTTT                                                                                                                                                                                                                                                                                                               ]
[-] EMBL BM421410             [ TTTTGGAACAGAAAAGGGG GTAACCTTGGATATTGTACATAAAGGTTTTTCATTTATTACAATAAATAAATAATTTAGGAGAGTATGGTGAC G  CTACTAACTAAATCTCTTGACACAATCACAC GTTCTCAGGGAGAGGGAAAAAAGAGCTAATACATTTTTTATCAACAGTTAAGCTCACTCTTGGTGGAATGGATGTAATCTTCGGGTGATCCGAGTAACCATATTAACAAATAACGTTCACCCTCCGAGTCAATCAAGAAACCGGTATACCGGACAAAAAATAGACAAGATATTACACAAATAATAATCAATCAGTTAAAAGGTCGTTATCTTGATAAGGGTTAG GGTAGCCTTTTTCTCCAGGGAGAAAGTCACAGACTCACAGTTCAACCTATCA CAAGAACTTCAGTATT                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB651657             [       AACAGAAAAGGGGCATAACCCTTGATATTGTACATAATGCTTTTTCA TTATTACAATAAATAAATAATTTAGGAGAGTATGGTGACTGTACTACTAACTAAATCTCTTGACACAATCACACTGTTCTCAGGGAGAGGGAAAAAAGAGCTAATACATTTTTTATCAACAGTTAAGCTCACTCTTGCTGGAATGGATGTAATCTTCGGGTGATCCGAGTAACCATATTAACAAATAACGTTCACCCTCCGAGTCAATCAAGAAACCGGTATACCGGACAAAAAATAGACAAGATATTACACAAATAATAATCAATCAGTTAAAAGGGCGTTATCTTGATAAGGTTTAGTGGTAGCCTTTTTCTCCAGGGAG AAGTCACAGACTCACAGTTCACCCTATCACCAAGACCTTCAGTCTTTTGCAGCTCATGCTCCAGTACCAACTAGCATAGTCTGGTGCACATCACATCTGCTTCAGCACTTGGCTTTTGCTCTCACATGATAACATACTGTCATGGTGCAGACATGGCTCTGGTTCATATGATGTCCATCTGTGATGTCAGTCTCTGTTATGGCAGGCAATAGTTCTACGACAACCTAGAACCACCGCCCTCCTCCTTTCTTGGTAGCTTTCAGTTCCATCACTAATCGTTCCCGCTGAGCCTCTACCTCTGCATACTGCAAGCTCATGTTGAGTAACCGCTCCTTCATATCTCTTAGCTCTCCTTCTAGTTGCAAAACCCTTTCGTTACTACTCTCATTGCCATTCCCAGCAGCACACTGCCCATCAGGC]




>consensus_6736#0
TTTTTGAAACAGAAAAGGGGCATAACCCTGGATATTGTACATAATGCTTTTTCATTATTA
CAATAAATAAATAATTTAGGAGAGTATGGTGACTGTACTACTAACTAAATCTCTTGACAC
AATCACACTGTTCTCAGGGAGAGGGAAAAAAGAGCTAATACATTTTTTATCAACAGTTAA
GCTCACTCTTGCTGGAATGGATGTAATCTTCGGGTGATCCGAGTAACCATATTAACAAAT
AACGTTCACCCTCCGAGTCAATCAAGAAACCGGTATACCGGACAAAAAATAGACAAGATA
TTACACAAATAATAATCAATCAGTTAAAAGGTCGTTATCTTGATAAGGTTTAGTGGTAGC
CTTTTTCTCCAGGGAGAAGTCACAGACTCACAGTTCACCCTATCACCAAGACCTTCAGTA
TTTTGCAGCTCATGCTCCAGTACCAACTAGCATAGTCTGGTGCACATCACATCTGCTTCA
GCACTTGGGTTTTGCTCTCACATGATAACATACTGTCATGGTGCAGACATGGCTCTGGTT
CATATGATGTCCATCTGTGATGTCAGTCTCTGTTATGGCAGGCAATAGTTCTACGACAAC
CTAGAACCACCGCCCTCCTCCTTTCTTGGTAGCTTTCAGTTCCATCACTAATCGTTCCCG
CTGAGCCTCTACCTCTGCATACTGCAAGCTCATGTTGAGTAACCGCTCCTTCATATCTCT
TAGCTCTCCTTCTAGTTGCAAAACCCTTTCGTTACTACTCTCATTGCCATTCCCAGCAGC
ACACTGCCCATCAGGC

consensusID : consensus_6736#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence

                              [TTTTTTTTTTGGTACATAAGGGTTTTTCATTATTACAATAAATAAATAATTTAGGAGAGTATGGTGACTGTACTACTAATAAATCTCTTGAAAATCAACTGTTCTCAGGGGAGAGGGAAAAAAGAGCTAATACATTTTTTATCAACAGTTAAGCTCACTCTTGCTGGAATGGATGTAATCTTCGGGTGATCCGAGTAACCATATTAACAAATAACGTTCACCCTCCGAGTCAATCAAGAAACCGGTATACCGGACAAAAAATAGACAAGATATTACACAAATAATAATCAATCAGTTAAAAGGTCGTTATCTTGATAAGGTTTAGGGGTACGCCTTTTTCTCCAGGAGAAGTCCACAGACTCACAGTTCACCCTATCACCAAGACCTTCAGTATTTGCAGTCATGCTCCCAGTACCAACTAGCATAGTCTGGTGCACCATCACATCTGGTTCCAGCACTTGGGTTTGGCTCCCATGATTAACATACT]

[-] EMBL BI813286             [TTTTTTTTTTGGTACATAAGGGTTTTTCATTATTACAATAAATAAATAATTTAGGAGAGTATGGTGACTGTACTACTAATAAATCTCTTGAAAATCAACTGTTCTCAGGGGAGAGGGAAAAAAGAGCTAATACATTTTTTATCAACAGTTAAGCTCACTCTTGCTGGAATGGATGTAATCTTCGGGTGATCCGAGTAACCATATTAACAAATAACGTTCACCCTCCGAGTCAATCAAGAAACCGGTATACCGGACAAAAAATAGACAAGATATTACACAAATAATAATCAATCAGTTAAAAGGTCGTTATCTTGATAAGGTTTAGGGGTACGCCTTTTTCTCCAGGAGAAGTCCACAGACTCACAGTTCACCCTATCACCAAGACCTTCAGTATTTGCAGTCATGCTCCCAGTACCAACTAGCATAGTCTGGTGCACCATCACATCTGGTTCCAGCACTTGGGTTTGGCTCCCATGATTAACATACT]




>consensus_6736#1
TTTTTTTTTTGGTACATAAGGGTTTTTCATTATTACAATAAATAAATAATTTAGGAGAGT
ATGGTGACTGTACTACTAATAAATCTCTTGAAAATCAACTGTTCTCAGGGGAGAGGGAAA
AAAGAGCTAATACATTTTTTATCAACAGTTAAGCTCACTCTTGCTGGAATGGATGTAATC
TTCGGGTGATCCGAGTAACCATATTAACAAATAACGTTCACCCTCCGAGTCAATCAAGAA
ACCGGTATACCGGACAAAAAATAGACAAGATATTACACAAATAATAATCAATCAGTTAAA
AGGTCGTTATCTTGATAAGGTTTAGGGGTACGCCTTTTTCTCCAGGAGAAGTCCACAGAC
TCACAGTTCACCCTATCACCAAGACCTTCAGTATTTGCAGTCATGCTCCCAGTACCAACT
AGCATAGTCTGGTGCACCATCACATCTGGTTCCAGCACTTGGGTTTGGCTCCCATGATTA
ACATACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6736#0      TTTTTGAAACAGAAAAGGGGCATAACCCTGGATATTGTACATAATGCTTTTTCATTATTA 60
consensus_6736#1      -------------------------TTTTTTTTTTGGTACATAAGGGTTTTTCATTATTA 35
                                                  *   * * ******** * *************

consensus_6736#0      CAATAAATAAATAATTTAGGAGAGTATGGTGACTGTACTACTAACTAAATCTCTTGACAC 120
consensus_6736#1      CAATAAATAAATAATTTAGGAGAGTATGGTGACTGTACTACTAA-TAAATCTCTTGAA-- 92
                      ******************************************** ************   

consensus_6736#0      AATCACACTGTTCTCAGGG-AGAGGGAAAAAAGAGCTAATACATTTTTTATCAACAGTTA 179
consensus_6736#1      AATCA-ACTGTTCTCAGGGGAGAGGGAAAAAAGAGCTAATACATTTTTTATCAACAGTTA 151
                      ***** ************* ****************************************

consensus_6736#0      AGCTCACTCTTGCTGGAATGGATGTAATCTTCGGGTGATCCGAGTAACCATATTAACAAA 239
consensus_6736#1      AGCTCACTCTTGCTGGAATGGATGTAATCTTCGGGTGATCCGAGTAACCATATTAACAAA 211
                      ************************************************************

consensus_6736#0      TAACGTTCACCCTCCGAGTCAATCAAGAAACCGGTATACCGGACAAAAAATAGACAAGAT 299
consensus_6736#1      TAACGTTCACCCTCCGAGTCAATCAAGAAACCGGTATACCGGACAAAAAATAGACAAGAT 271
                      ************************************************************

consensus_6736#0      ATTACACAAATAATAATCAATCAGTTAAAAGGTCGTTATCTTGATAAGGTTTAGTGGTA- 358
consensus_6736#1      ATTACACAAATAATAATCAATCAGTTAAAAGGTCGTTATCTTGATAAGGTTTAGGGGTAC 331
                      ****************************************************** **** 

consensus_6736#0      GCCTTTTTCTCCAGGGAGAAGTCACAGACTCACAGTTCACCCTATCACCAAGACCTTCAG 418
consensus_6736#1      GCCTTTTTCTCCAGGAGAAGTCCACAGACTCACAGTTCACCCTATCACCAAGACCTTCAG 391
                      ***************   *   **************************************

consensus_6736#0      TATTTTGCAGCTCATGCTCC-AGTACCAACTAGCATAGTCTGGTGCAC-ATCACATCTGC 476
consensus_6736#1      TATTT-GCAG-TCATGCTCCCAGTACCAACTAGCATAGTCTGGTGCACCATCACATCTGG 449
                      ***** **** ********* *************************** ********** 

consensus_6736#0      TTC-AGCACTTGGGTTTTGCTCTCACATGATAACATACTGTCATGGTGCAGACATGGCTC 535
consensus_6736#1      TTCCAGCACTTGGGTTTGGCTCCCATG-ATTAACATACT--------------------- 487
                      *** ************* **** **     *********                     

consensus_6736#0      TGGTTCATATGATGTCCATCTGTGATGTCAGTCTCTGTTATGGCAGGCAATAGTTCTACG 595
consensus_6736#1      ------------------------------------------------------------
                                                                                  

consensus_6736#0      ACAACCTAGAACCACCGCCCTCCTCCTTTCTTGGTAGCTTTCAGTTCCATCACTAATCGT 655
consensus_6736#1      ------------------------------------------------------------
                                                                                  

consensus_6736#0      TCCCGCTGAGCCTCTACCTCTGCATACTGCAAGCTCATGTTGAGTAACCGCTCCTTCATA 715
consensus_6736#1      ------------------------------------------------------------
                                                                                  

consensus_6736#0      TCTCTTAGCTCTCCTTCTAGTTGCAAAACCCTTTCGTTACTACTCTCATTGCCATTCCCA 775
consensus_6736#1      ------------------------------------------------------------
                                                                                  

consensus_6736#0      GCAGCACACTGCCCATCAGGC 796
consensus_6736#1      ---------------------