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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6748#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 998 fasta sequence
[CAACGTCGCCATGGGTCGTGTCATTCGCAACCAGAGAAAGGGTCGCGGCTCGATCTTCACGGCCAACACCCGCCTGAACAAGGCCCCTGCCCAGTTCCGCACCTACGACTTCTCGGAGCGTAATGGCTACATTCGGGGTGTCGTAAAGGAGATTGTTCACGACTCCGGTCGTGGCGCTCCTCTCGCCAGGGTCACCTTCCGCAACCCCTACAAGTTCAAGCACAACACCGAGACCTTCATCGCCAACGAGGGCATGTACACTGGCCAGTTCATCTACGCCGGAAAGAACGCTGCTCTCACCATCGGCAACGTCTTGCCCCTCGCCTCCGTCCCTGAGGGTACCGTCCTCACCAACGTCGAGGACAAGTCCGGTGACCGTGGTGCGCTCGGCCGTACCTCTGGTAACTACGTTACCGTCATCGGCCACAACCCCGACGAGGGCAAGACCCGTGTCAAGCTCCCATCCGGTGCCAAGAAGGTCCTTCCCAGCTCATGCCGTGGTATGGTTGGTATCGTCGCTGGAGGTGGCCGCACAGACAAGCCTCTCATGAAGGCGTCGCGCGCCAAGCACAAGTTCGCTGCCAAGCGCAACAGCTGGCCCAGGACTCGTGGTGTTGCCATGAACCCCGTCGACCATCCCCACGGTGGTGGTAACCACCAGCATATCGGTAAAGCCTCGACCATCTCGCGATACGCCGTCCAGGGTCAAAAGGCCGGTCTCATTGCCGCGAGGAGGACAGGTCTGCTCCGTGGTACCCAGAAGACCAAGGACTAAAGTGGTGCATGATACGGTGGCGTCAAAATGGGTCAATGACAACGATGCAAACGGTTATTCTCTCCATACTACCTACTCTCTGTGCGGGTGGCCGGGCGTTATAACAACACTTCTCGGCAGGCTGTGCTTTACATGGCTTGCGTGCATGATAGGTTCTTAGGGAATGTGATTCCGAAAAATGCATCTGGGCTGTACTTTTGGCAATGTGAAATGATACCATTAC]
[+] EMBL AK108169 [CAACGTCGCCATGGGTCGTGTCATTCGCAACCAGAGAAAGGGTCGCGGCTCGATCTTCACGGCCAACACCCGCCTGAACAAGGCCCCTGCCCAGTTCCGCACCTACGACTTCTCGGAGCGTAATGGCTACATTCGGGGTGTCGTAAAGGAGATTGTTCACGACTCCGGTCGTGGCGCTCCTCTCGCCAGGGTCACCTTCCGCAACCCCTACAAGTTCAAGCACAACACCGAGACCTTCATCGCCAACGAGGGCATGTACACTGGCCAGTTCATCTACGCCGGAAAGAACGCTGCTCTCACCATCGGCAACGTCTTGCCCCTCGCCTCCGTCCCTGAGGGTACCGTCCTCACCAACGTCGAGGACAAGTCCGGTGACCGTGGTGCGCTCGGCCGTACCTCTGGTAACTACGTTACCGTCATCGGCCACAACCCCGACGAGGGCAAGACCCGTGTCAAGCTCCCATCCGGTGCCAAGAAGGTCCTTCCCAGCTCATGCCGTGGTATGGTTGGTATCGTCGCTGGAGGTGGCCGCACAGACAAGCCTCTCATGAAGGCGTCGCGCGCCAAGCACAAGTTCGCTGCCAAGCGCAACAGCTGGCCCAGGACTCGTGGTGTTGCCATGAACCCCGTCGACCATCCCCACGGTGGTGGTAACCACCAGCATATCGGTAAAGCCTCGACCATCTCGCGATACGCCGTCCAGGGTCAAAAGGCCGGTCTCATTGCCGCGAGGAGGACAGGTCTGCTCCGTGGTACCCAGAAGACCAAGGACTAAAGTGGTGCATGATACGGTGGCGTCAAAATGGGTCAATGACAACGATGCAAACGGTTATTCTCTCCATACTACCTACTCTCTGTGCGGGTGGCCGGGCGTTATAACAACACTTCTCGGCAGGCTGTGCTTTACATGGCTTGCGTGCATGATAGGTTCTTAGGGAATGTGATTCCGAAAAATGCATCTGGGCTGTACTTTTGGCAATGTGAAATGATACCATTAC]
consensusID : consensus_6748#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 927 fasta sequence
[AAGCGGCCCAAGCCAGAACTCCTATTCACGATGGGTAGAGTCATTCGCAACCAGCGTAAGGGTCGTGGATCCATCTTCACGGCCAACACGCGCCTGAACAAGGCCCCTGCTAAGTTCAGAAACCTCGATTATGCCGAGCGCCACGGCTACCTTCGAGGTGTCGTCCGCGAGATCGTCCACGATGCTGGTCGCGGTGCCCCCCTCGCCAAGGTCGTCTTCCGTCACCCCTACCGATTCAAGCAGGTCACCGAGACTTTCATCGCCAACGAAGGCATGTACACCGGCCAATTCATCTACGCCGGAAAGAAGGCTGCCCTGACTGTCGGCAACGTCCTCCCTCTCGGTGAGATGCCCGAGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAACCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCAAGCTTCCCTCTGGTGCCAGGAAGGTCGTCCACTCCGGTGCCCGAGGAATGATCGGTATCGTCGCTGGCGGTGGCCGAACTGACAAGCCTCTCCTGAAGGCTTCTCGTGCCAAGCACAAGTTCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCGTGGTGTTGCCATGAACCCCGTCGACCATCCCCACGGTGGTGGTAACCACCAACATATTGGTAAGGCTTCTACCATCTCCCGATACGCCGTCCAGGGTCAAAAGGCCGGTCTTATCGCCGCCCGCAGAACGGGTCTTCTCCGTGGTACCCAGAAGACAAAGGAGTAAAGTGGTGGCTGGGTTCATGGTCTCATTGGGATGGTGTTTACTGGCTTGCTTGCATCTATTGAAGGTACTGCCAAGAGCAGATGGCTGGTAGCTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATT]
[+] EMBL AK108964 [AAGCGGCCCAAGCCAGAACTCCTATTCACGATGGGTAGAGTCATTCGCAACCAGCGTAAGGGTCGTGGATCCATCTTCACGGCCAACACGCGCCTGAACAAGGCCCCTGCTAAGTTCAGAAACCTCGATTATGCCGAGCGCCACGGCTACCTTCGAGGTGTCGTCCGCGAGATCGTCCACGATGCTGGTCGCGGTGCCCCCCTCGCCAAGGTCGTCTTCCGTCACCCCTACCGATTCAAGCAGGTCACCGAGACTTTCATCGCCAACGAAGGCATGTACACCGGCCAATTCATCTACGCCGGAAAGAAGGCTGCCCTGACTGTCGGCAACGTCCTCCCTCTCGGTGAGATGCCCGAGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAACCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCAAGCTTCCCTCTGGTGCCAGGAAGGTCGTCCACTCCGGTGCCCGAGGAATGATCGGTATCGTCGCTGGCGGTGGCCGAACTGACAAGCCTCTCCTGAAGGCTTCTCGTGCCAAGCACAAGTTCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCGTGGTGTTGCCATGAACCCCGTCGACCATCCCCACGGTGGTGGTAACCACCAACATATTGGTAAGGCTTCTACCATCTCCCGATACGCCGTCCAGGGTCAAAAGGCCGGTCTTATCGCCGCCCGCAGAACGGGTCTTCTCCGTGGTACCCAGAAGACAAAGGAGTAAAGTGGTGGCTGGGTTCATGGTCTCATTGGGATGGTGTTTACTGGCTTGCTTGCATCTATTGAAGGTACTGCCAAGAGCAGATGGCTGGTAGCTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATT]
consensusID : consensus_6748#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 675 fasta sequence
[GGCCCCTGCTAAGTTCAGGAGCCTCGGTTTTGCCAAGCCGCCCCGGCTTCCTTCGAGTGTGTCGTCCCGCGAGATCGTGCCCCCCTGCTGGTCCGGGGTGCCCCCCTCGCCAAGGTGGTCTTCCGTCCCCCCTCCGGATTCAAGCAGGTCCCCGAGACTTTTATCGCCAACGAAGGCATGTACCCCGGCCCATTCATCTACGCCGGAAAGAAGGCTGCCCTGACCGTGGGCAACGTCCTCCCTCTCGGTGAGATGCCCGAGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAACCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCAAGCTTCCCTCTGGTGCCAAGAAGGTTGTCCACTCCGGTGCCCGAGGAATGATCGGTATCGTCGCTGGCGGTGGCCGAACTGACAAGCCTCTCATGAAGGCTTCTCGTGCCAAGCACAAGTTCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCATGGTCTCATTGGGATGGTGTTTACTGGCTTGCTTGCATCTATTGAAGGTACTGCCGAGAGCAGATGGCTGGTAGCTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATTTTGAAGGCCGTTTCTCTGTGAAAAAAA]
[-] EMBL CA763691 [GGCCCCTGCTAAGTTCAGGAGCCTCGGTTTTGCCAAGCCGCCCCGGCTTCCTTCGAGTGTGTCGTCCCGCGAGATCGTGCCCCCCTGCTGGTCCGGGGTGCCCCCCTCGCCAAGGTGGTCTTCCGTCCCCCCTCCGGATTCAAGCAGGTCCCCGAGACTTTTATCGCCAACGAAGGCATGTACCCCGGCCCATTCATCTACGCCGGAAAGAAGGCTGCCCTGACCGTGGGCAACGTCCTCCCTCTCGGTGAGATGCCCGAGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAACCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCAAGCTTCCCTCTGGTGCCAAGAAGGTTGTCCACTCCGGTGCCCGAGGAATGATCGGTATCGTCGCTGGCGGTGGCCGAACTGACAAGCCTCTCATGAAGGCTTCTCGTGCCAAGCACAAGTTCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCATGGTCTCATTGGGATGGTGTTTACTGGCTTGCTTGCATCTATTGAAGGTACTGCCGAGAGCAGATGGCTGGTAGCTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATTTTGAAGGCCGTTTCTCTGTGAAAAAAA]
[-] EMBL CA763690 [GGCCCCTGCTAAGTTCAGGAGCCTCGGTTTTGCCAAGCCGCCCCGGCTTCCTTCGAGTGTGTCGTCCCGCGAGATCGTGCCCCCCTGCTGGTCCGGGGTGCCCCCCTCGCCAAGGTGGTCTTCCGTCCCCCCTCCGGATTCAAGCAGGTCCCCGAGACTTTTATCGCCAACGAAGGCATGTACCCCGGCCCATTCATCTACGCCGGAAAGAAGGCTGCCCTGACCGTGGGCAACGTCCTCCCTCTCGGTGAGATGCCCGAGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAACCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCAAGCTTCCCTCTGGTGCCAAGAAGGTTGTCCACTCCGGTGCCCGAGGAATGATCGGTATCGTCGCTGGCGGTGGCCGAACTGACAAGCCTCTCATGAAGGCTTCTCGTGCCAAGCACAAGTTCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCATGGTCTCATTGGGATGGTGTTTACTGGCTTGCTTGCATCTATTGAAGGTACTGCCGAGAGCAGATGGCTGGTAGCTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATTTTGAAGGCCGTTTCTCTGTGAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6748#1 AAGCGGCCCAAGCCAGAACTCCTATTCACGATGGGTAGAGTCATTCGCAACCAGCGTAAG 60
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 --------------------CAACGTCGCCATGGGTCGTGTCATTCGCAACCAGAGAAAG 40
consensus_6748#1 GGTCGTGGATCCATCTTCACGGCCAACACGCGCCTGAACAAGGCCCCTGCTAAGTTCAGA 120
consensus_6748#2 -----------------------------------------GGCCCCTGCTAAGTTCAGG 19
consensus_6748#0 GGTCGCGGCTCGATCTTCACGGCCAACACCCGCCTGAACAAGGCCCCTGCCCAGTTCCGC 100
********* ***** *
consensus_6748#1 AACCTCGATTATGCCGAGC-GCCACGGCTACCTTCGAG-GTGTCGTCC-GCGAGATCGT- 176
consensus_6748#2 AGCCTCGGTTTTGCCAAGCCGCCCCGGCTTCCTTCGAGTGTGTCGTCCCGCGAGATCGTG 79
consensus_6748#0 ACCTACGACTTCTCGGAGC-GTAATGGCTACATTCGGG-GTGTCGTAA-AGGAGATTGT- 156
* * ** * * *** * **** * **** * ******* ***** **
consensus_6748#1 CCACGATGCTGGTC-GCGGTGCCCCCCTCGCCAAGGTCGTCTTCCGTCACCCCTACCGAT 235
consensus_6748#2 CCCCCCTGCTGGTCCGGGGTGCCCCCCTCGCCAAGGTGGTCTTCCGTCCCCCCTCCGGAT 139
consensus_6748#0 TCACGACTCCGGTC-GTGGCGCTCCTCTCGCCAGGGTCACCTTCCGCAACCCCTACAAGT 215
* * * **** * ** ** ** ******* *** ****** ***** * *
consensus_6748#1 TCAAGCAGGTCACCGAGACTTTCATCGCCAACGAAGGCATGTACACCGGCCAATTCATCT 295
consensus_6748#2 TCAAGCAGGTCCCCGAGACTTTTATCGCCAACGAAGGCATGTACCCCGGCCCATTCATCT 199
consensus_6748#0 TCAAGCACAACACCGAGACCTTCATCGCCAACGAGGGCATGTACACTGGCCAGTTCATCT 275
******* * ******* ** *********** ********* * **** *******
consensus_6748#1 ACGCCGGAAAGAAGGCTGCCCTGACTGTCGGCAACGTCCTCCCTCTCGGTGAGATGCCCG 355
consensus_6748#2 ACGCCGGAAAGAAGGCTGCCCTGACCGTGGGCAACGTCCTCCCTCTCGGTGAGATGCCCG 259
consensus_6748#0 ACGCCGGAAAGAACGCTGCTCTCACCATCGGCAACGTCTTGCCCCTCGCCTCCGTCCCTG 335
************* ***** ** ** * ********* * ** **** * ** *
consensus_6748#1 AGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAA 415
consensus_6748#2 AGGGTACCGTCGTCTCCAACGTTGAGGAGAAGATCGGTGACCGTGGTTCTCTCGGCCGAA 319
consensus_6748#0 AGGGTACCGTCCTCACCAACGTCGAGGACAAGTCCGGTGACCGTGGTGCGCTCGGCCGTA 395
*********** ** ******* ***** *** ************* * ******** *
consensus_6748#1 CCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCA 475
consensus_6748#2 CCTCCGGCAACTACATCACCATTGTCGGCCACAACCCTGATGAGGGCAAGACCCGCATCA 379
consensus_6748#0 CCTCTGGTAACTACGTTACCGTCATCGGCCACAACCCCGACGAGGGCAAGACCCGTGTCA 455
**** ** ****** * *** * ************* ** ************** ***
consensus_6748#1 AGCTTCCCTCTGGTGCCAGGAAGGTCGTCCACTCCGGTGCCCGAGGAATGATCGGTATCG 535
consensus_6748#2 AGCTTCCCTCTGGTGCCAAGAAGGTTGTCCACTCCGGTGCCCGAGGAATGATCGGTATCG 439
consensus_6748#0 AGCTCCCATCCGGTGCCAAGAAGGTCCTTCCCAGCTCATGCCGTGGTATGGTTGGTATCG 515
**** ** ** ******* ****** * * * * *** ** *** * *******
consensus_6748#1 TCGCTGGCGGTGGCCGAACTGACAAGCCTCTCCTGAAGGCTTCTCGTGCCAAGCACAAGT 595
consensus_6748#2 TCGCTGGCGGTGGCCGAACTGACAAGCCTCTCATGAAGGCTTCTCGTGCCAAGCACAAGT 499
consensus_6748#0 TCGCTGGAGGTGGCCGCACAGACAAGCCTCTCATGAAGGCGTCGCGCGCCAAGCACAAGT 575
******* ******** ** ************ ******* ** ** *************
consensus_6748#1 TCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCGTGGTGTTGCCATGAACCCCGTCGACC 655
consensus_6748#2 TCGCTGTCAAGCGTAACAGCTGGCCCAAGACTCATGGTCTCATTG-GGATGGTGTTTACT 558
consensus_6748#0 TCGCTGCCAAGCGCAACAGCTGGCCCAGGACTCGTGGTGTTGCCATGAACCCCGTCGACC 635
****** ****** ************* ***** **** * * * ** **
consensus_6748#1 ATCCCCACGGTGGTGGTAACCACCAACATATTGGTAAGGCTTCTACCATCTCCCGATACG 715
consensus_6748#2 GGCT------TGCTTGCATCTAT-----------TGAAGGTACTGCCGAGAGCAGATGGC 601
consensus_6748#0 ATCCCCACGGTGGTGGTAACCACCAGCATATCGGTAAAGCCTCGACCATCTCGCGATACG 695
* ** * * * * * * * * * ** ***
consensus_6748#1 CCGTCCAGGGTCAAAAGGCCGGTCTTATCGCCGCC--CGCAGAACGGGTCTTCTCCGTGG 773
consensus_6748#2 TGGT---AGCTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATTTTGAAGGCCG 658
consensus_6748#0 CCGTCCAGGGTCAAAAGGCCGGTCTCATTGCCGCG--AGGAGGACAGGTCTGCTCCGTGG 753
** * ** * *** ** ** ** * * * * * * *
consensus_6748#1 TACCCAGAAGACAAAGGAGTAAAGTGGTGGCTGGGTTCATGGTCTCATTG-GGATGGTGT 832
consensus_6748#2 TTTCTCTGTGAAAAAAA------------------------------------------- 675
consensus_6748#0 TACCCAGAAGACCAAGGACTAAAGTGGTGCATGATACGGTGGCGTCAAAATGGGTCAATG 813
* * ** **
consensus_6748#1 TTACTGGCTTGCTTGCATCTATTGAAGGTACTGCCAA------GAGCAGATGGCTGGTAG 886
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 ACAACGATGCAAACGGTTATTCTCTCCATACTACCTACTCTCTGTGCGGGTGGCCGGGCG 873
consensus_6748#1 CTCCGAGGGCAAGTACTATGGCATTTGGCGCAAAAAAAATT------------------- 927
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 TTATAACAACACTTCTCGGCAGGCTGTGCTTTACATGGCTTGCGTGCATGATAGGTTCTT 933
consensus_6748#1 ------------------------------------------------------------
consensus_6748#2 ------------------------------------------------------------
consensus_6748#0 AGGGAATGTGATTCCGAAAAATGCATCTGGGCTGTACTTTTGGCAATGTGAAATGATACC 993
consensus_6748#1 -----
consensus_6748#2 -----
consensus_6748#0 ATTAC 998
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||