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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6750#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 955 fasta sequence
[CAAATTCACCATCCCATCCAATCTTGACGACGATGCCGCCGAGATCGCCGCTTCTCGCCCTCGTCTTCCTCGCCGCCGGCGTCCTATCCTCGGCCACCTCTCCGCCTCCGCCGCCGTGCAGCCGCTCGTGCGCCGCCCTCAACTGCGACTCCGTAGGGATCCGGTATGGCAAGTACTGCGGCGTTGGCTGGAGCGGCTGCGATGGAGAGGAGCCCTGCGATGACCTCGACGCCTGCTGCCGCGACCACGACCACTGCGTCGACAAGAAAGGTCTGATGAGTGTGAAATGCCATGAGAAATTCAAAAACTGCATGAGGAA-GGTAAAAAAGGCTGGCAAGA-TTGGCTTCTCTA-GGAAATG-CCCGTACGAGAT-GGCTAT-GGCAACAATG-ACCTCA-GGGATGGACAT-GGCCATCATGC-TCAGTCAGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTCTCCTTACGGAGGTACTCCATTTCTTAGATGATGGTTAACCGTATTTGATTGCACCAAAGTTTGATTTTTTTTTTACAGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTCTTTTCCCCTTGCTGCACAATTTGCAGCATATAGTATTTTTTTTGTACAAGAGATTTGGCATGTAAACTGAACCAAATGTTCCGGCTCACTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTACTTTGCTTTGATACGTTGGATCAGTAGGGGTCTGGATCTCTTTAACATAATAATGTAACACTCCTGAGTCTCTGAGCATGTTATGGACAAACTCTGGTGCTTGTGTAATCAGTGGCGTCTGTTGATTGATTGATTTGGTGCTTGAGGATGAAACAGTAGGCAGTGGGCACACACAACTGGAAAGTGTGTTGGAAAACAAAAGACATTACACATAAGAAATGATAGTATTACCGTT]
[+] EMBL AK108410 [CAAATTCACCATCCCATCCAATCTTGACGACGATGCCGCCGAGATCGCCGCTTCTCGCCCTCGTCTTCCTCGCCGCCGGCGTCCTATCCTCGGCCACCTCTCCGCCTCCGCCGCCGTGCAGCCGCTCGTGCGCCGCCCTCAACCGCGACTCCGTAGGGATCCGGTATGGCAAGTACTGCGGCGTTGGCT GAGCGGCTGCGATGGAGAGGAGCCCTGCGATGACCTCGACGCCTGCTGCCGCGACCACGACCACTGCGTCGACAAGAAAGGTCTGATGAGTGTGAAATGCCATGAGAAATTCAAAAACTGCATGAGGAA GGTAAAAAAGGCTGGCAAGA TTGGCTTCTCTA GGAAATG CCCGTACGAGAT GGCTAT GGCAACAATG ACCTCA GGGATGGACAT GGCCATCATGC TCAGTCAGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTCTCCTTACGGAGGTACTCCATTTCTTAGATGATGGTTAACCGTATTTGATTGCACCAAAGTTTGATTTTTTTTTTACAGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTCTTTTCCCCTTGCTGCACAATTTGCAGCATATAGTATTTTTTTTGTACAAGAGATTTGGCATGTAAACTGAACCAAATGTTCCGGCTCACTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTACTTTGCTTTGATACGTTGGATCAGTAGGGGTCTGGATCTCTTTAACATAATAATGTAACACTCCTGAGTCTCTGAGCATGTTATGGACAAACTCTGGTGCTTGTGTAATCAGTGGCGTCTGTTGATTGATTGATTTGGTGCTTGAGGATGAAACAGTAGGCAGTGGGCACACACAACTGGAAAGTGTGTTGGAAAACAAAAGACATTACACATAAGAAATGATAGTATTACCGTT]
[+] EMBL OSA238116 [ TCCCATCCAATCTTGACGACGATGCCGCCGAGATCGCCGCTTCTCGCCCTCGTCTTCCTCGCCGCCGGCGTCCTATCCTCGGCCACCTCTCCGCCTCCGCCGCCGTGCAGCCGCTCGTGCGCCGCCCTCAACTGCGACTCCGTAGGGATCCGGTATGGCAAGTACTGCGGCGTTGGCTGGAGCGGCTGCGATGGAGAGGAGCCCTGCGATGACCTCGACGCCTGCTGCCGCGACCACGACCACTGCGTCGACAAGAAAGGTCTGATGAGTGTGAAATGCCATGAGAAATTCAAAAACTGCATGAGGAA GGTAAAAAAGGCTGGCAAGA TTGGCTTCTCTA GGAAATG CCCGTACGAGAT GGCTAT GGCAACAATG ACCTCA GGGATGGACAT GGCCATCATGC TCAGTCAGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTCTCCTTACGGAGGTACTCCATTTCTTAGATGATGGTTAACCGTATTTGATTGCACCAAAGTTTGATTTTTTTTTTACAGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTCTTTTCCCCTTGCTGCACAATTTGCAGCATATAGTATTTTTTTTGTACAAGAGATTTGGCATGTAAACTGAACCAAATGTTCCGGCTCACTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTACTTTGCTTTGATACGTTGGATCAGTAGGGGTCTGGATCTCTTTAACATAATAATGTAACACTCCTGAGTCTCTGAG ]
[+] EMBL OSS15672A [ TCCCATCCAATCTTGACGACGATGCCGCCGAGATCGCCGCTTCTCGCCCTCGTNTTCCTCGCCGCCGGCGTCCTATCCTCGGCCACCTCTCCGCCTCCGCCGCCGTGCAGCCGCTCGTGCGCCGCCCTCAACTGCGACTCCGTAGGGATCCGGTATGGCAAGTACTGCGGCGTTGGCTGGAGCGGCTGCGATGGAGAGGAGCCCTGCGATGACCTCGACGCCTGCTGCCGCGACCACGACCACTGCGTCGACAAGAAAGGTCTGATGAGTGTNAAATGCCATGAGAAATTCAAAAACTGCATGAGGAAGGGTAAAAAAGGCTGGCAAGATTTNGCTTCTCTAGGGAAATGNCCCGTACGAGATGGGCTATGGGAAACAATGNCCCTCAGGGGTTGGACATGGGCCATCATGCTTCAGTCAGTT ]
consensusID : consensus_6750#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[TCAGGGATGGACATGGCCATCATGCTCAGTCAGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTNTCCTTACGGAGGTACTCCATTTNTTAGATGATGGTTAACCGTATTTGATTGCNCCAAAGTTTGATTTTTTTTTTACAGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTNTTTTCCCCTTGCTGCACAATTTGCAGCATATAGTATTTTTTTTGTACAANAGATTTGGCATGTAAACTGAACCAAATGTTCCGGCTCNCTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTACTTTGCTTTGATACGTTGGATCAGTAGGGGTNTGGATNTCTTTAACATAATAATGTAACACTCCTGAGTCTNTGAGCATGTTATGGGCAAAAAAAAAAAAAAAAAA]
[+] EMBL AU174087 [TCAGGGATGGACATGGCCATCATGCTCAGTCAGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTNTCCTTACGGAGGTACTCCATTTNTTAGATGATGGTTAACCGTATTTGATTGCNCCAAAGTTTGATTTTTTTTTTACAGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTNTTTTCCCCTTGCTGCACAATTTGCAGCATATAGTATTTTTTTTGTACAANAGATTTGGCATGTAAACTGAACCAAATGTTCCGGCTCNCTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTACTTTGCTTTGATACGTTGGATCAGTAGGGGTNTGGATNTCTTTAACATAATAATGTAACACTCCTGAGTCTNTGAGCATGTTATGGGCAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6750#0 CAAATTCACCATCCCATCCAATCTTGACGACGATGCCGCCGAGATCGCCGCTTCTCGCCC 60
consensus_6750#1 ------------------------------------------------------------
consensus_6750#0 TCGTCTTCCTCGCCGCCGGCGTCCTATCCTCGGCCACCTCTCCGCCTCCGCCGCCGTGCA 120
consensus_6750#1 ------------------------------------------------------------
consensus_6750#0 GCCGCTCGTGCGCCGCCCTCAACTGCGACTCCGTAGGGATCCGGTATGGCAAGTACTGCG 180
consensus_6750#1 ------------------------------------------------------------
consensus_6750#0 GCGTTGGCTGGAGCGGCTGCGATGGAGAGGAGCCCTGCGATGACCTCGACGCCTGCTGCC 240
consensus_6750#1 ------------------------------------------------------------
consensus_6750#0 GCGACCACGACCACTGCGTCGACAAGAAAGGTCTGATGAGTGTGAAATGCCATGAGAAAT 300
consensus_6750#1 ------------------------------------------------------------
consensus_6750#0 TCAAAAACTGCATGAGGAAGGTAAAAAAGGCTGGCAAGATTGGCTTCTCTAGGAAATGCC 360
consensus_6750#1 ------------------------------------------------------------
consensus_6750#0 CGTACGAGATGGCTATGGCAACAATGACCTCAGGGATGGACATGGCCATCATGCTCAGTC 420
consensus_6750#1 -----------------------------TCAGGGATGGACATGGCCATCATGCTCAGTC 31
*******************************
consensus_6750#0 AGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTCTCCTTACGGAGGTACT 480
consensus_6750#1 AGTTGGGCACCCAGAAGTTGGAACTGTAGCTTTAATTTGGCTTNTCCTTACGGAGGTACT 91
******************************************* ****************
consensus_6750#0 CCATTTCTTAGATGATGGTTAACCGTATTTGATTGCACCAAAGTTTGATTTTTTTTTTAC 540
consensus_6750#1 CCATTTNTTAGATGATGGTTAACCGTATTTGATTGCNCCAAAGTTTGATTTTTTTTTTAC 151
****** ***************************** ***********************
consensus_6750#0 AGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTCTTTTCCCCTTGCTGCACAATTTGC 600
consensus_6750#1 AGGAATGTATTGATTTGGGCAGCCTAAAAAGATTTNTTTTCCCCTTGCTGCACAATTTGC 211
*********************************** ************************
consensus_6750#0 AGCATATAGTATTTTTTTTGTACAAGAGATTTGGCATGTAAACTGAACCAAATGTTCCGG 660
consensus_6750#1 AGCATATAGTATTTTTTTTGTACAANAGATTTGGCATGTAAACTGAACCAAATGTTCCGG 271
************************* **********************************
consensus_6750#0 CTCACTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTA 720
consensus_6750#1 CTCNCTGGGTATGGGTAAAAAGGGTTTTCCTTTCCTTTATGCTGTAACATTATCCATTTA 331
*** ********************************************************
consensus_6750#0 CTTTGCTTTGATACGTTGGATCAGTAGGGGTCTGGATCTCTTTAACATAATAATGTAACA 780
consensus_6750#1 CTTTGCTTTGATACGTTGGATCAGTAGGGGTNTGGATNTCTTTAACATAATAATGTAACA 391
******************************* ***** **********************
consensus_6750#0 CTCCTGAGTCTCTGAGCATGTTATGGACAAACTCTGGTGCTTGTGTAATCAGTGGCGTCT 840
consensus_6750#1 CTCCTGAGTCTNTGAGCATGTTATGGGCAAAAAAAAAAAAAAAAAA-------------- 437
*********** ************** ****
consensus_6750#0 GTTGATTGATTGATTTGGTGCTTGAGGATGAAACAGTAGGCAGTGGGCACACACAACTGG 900
consensus_6750#1 ------------------------------------------------------------
consensus_6750#0 AAAGTGTGTTGGAAAACAAAAGACATTACACATAAGAAATGATAGTATTACCGTT 955
consensus_6750#1 -------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||