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Oryza sativa
cluster # 6754 cluster # 6754       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6754#0 length = 1320 sequences # 4  

consensusID : consensus_6754#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1320
fasta sequence
                              [AAGGGAGAAATCCAAACGCCCGAAAAATCTAGCCATGGTTCTCCTCGCCGCCGCCGCCGTCGGGCCACACAAAACCCTAAACCCTACCCTGAGCCCGCCGAGCTCCGGCGGCCGCCGCCCCCGCCTCCGCTTCCCGCTGCCCCTTCCGCGGGGCGGCCACCTCCGCTGCTCCGCGGGGTACCGCGAGGCGGCGGCGGCAGCGGCGTCGACGTCGTCGACGACGACGACGCCGCGGCCGACGGAGATCCCGTGGAGCAGGGAGCTCTGCAACTCCGTTCGGCTCATCGGGACGGTGGGCACCGAGGTGGAGCTGCGGCAGCTGCCCAGCGGCGGCTCCGTCGCGCGGGGGCGCCTCGCCATCTGGAAGTCGGCCACCGAGACCACATGGGTGACTCTAGCATTTTGGGATGACCTAGCGGTTGTGGCTTCTGAGCATGTGAAGAAGGGTGACCGAATATTTGTTTCTGGACGCCTTGTGTCGGACACTGTTGATGAGGGCCCTGAGAAACGACAGGTTTATTATAAGGTTGTGGTTCAACAGTTCAATTTCATTGAGTCCTTTCAGCAAGTGCAGTTATATGAGCCAGAGGCAGGCCTGGATACCTTAGGTGGAAAGCATGGAGATTATGTTGGTTCTACCTCTGGCTCGAGTGAGGGTAAAAGTAGGGACCATGTTGACTCATCCTCCCGTTCAACTGAACAGTTGTGGCAAGCCTTCTTTGCTAATCCTTTTGACTGGTGGGATAACAGGACAAATAAGAAGAACCCGAGGTATCCAGACTTCAAGCACAAACACACCGGTGAAGCATTGTGGGTTGATGGGAGGAACAATCCAAATTGGGTTATCTCCCAGTTGGCAATTCTGGACTCGAGAATGGGTTCTCTTCAAGGCAATGATAGGAAACCAGTTGCCTTTATGTATGCTGATGACTTCATGACACCTGACACCGACACTGAAGCCCATATGTGAAAGGAAACCTCCCATTCACCGATTTATCATAGCACTATGTATTAGATAGAAAATGTACTACTGCGATAGTGCACCTGCGCTCCTTCAATTTTGTTGTACATAGGTAGAATCGTGAAGTTTACCATAGAGGCGTGCGGCCATCTGTTGTAGTCAGTAGTAATGACAAATGCAGATGTAGTAAAGAATCGGATGGCCTTCCCTTAAATTTGCCTGAGAAACGGTGTACATCACTTGGTGTGTTTGCATCAGCTGAGCCTCAACTGACAAGTGACTTAATTACATTGGCATGCTCATTGGCTTAGATGGTGCAACAATGCAATCATCATCATATCTGCCATGAGTTGTGACCT]

[+] EMBL AK068169             [AAGGGAGAAATCCAAACGCCCGAAAAATCTAGCCATGGTTCTCCTCGCCGCCGCCGCCGTCGGGCCACACAAAACCCTAAACCCTACCCTGAGCCCGCCGAGCTCCGGCGGCCGCCGCCCCCGCCTCCGCTTCCCGCTGCCCCTTCCGCGGGGCGGCCACCTCCGCTGCTCCGCGGGGTACCGCGAGGCGGCGGCGGCAGCGGCGTCGACGTCGTCGACGACGACGACGCCGCGGCCGACGGAGATCCCGTGGAGCAGGGAGCTCTGCAACTCCGTTCGGCTCATCGGGACGGTGGGCACCGAGGTGGAGCTGCGGCAGCTGCCCAGCGGCGGCTCCGTCGCGCGGGGGCGCCTCGCCATCTGGAAGTCGGCCACCGAGACCACATGGGTGACTCTAGCATTTTGGGATGACCTAGCGGTTGTGGCTTCTGAGCATGTGAAGAAGGGTGACCGAATATTTGTTTCTGGACGCCTTGTGTCGGACACTGTTGATGAGGGCCCTGAGAAACGACAGGTTTATTATAAGGTTGTGGTTCAACAGTTCAATTTCATTGAGTCCTTTCAGCAAGTGCAGTTATATGAGCCAGAGGCAGGCCTGGATACCTTAGGTGGAAAGCATGGAGATTATGTTGGTTCTACCTCTGGCTCGAGTGAGGGTAAAAGTAGGGACCATGTTGACTCATCCTCCCGTTCAACTGAACAGTTGTGGCAAGCCTTCTTTGCTAATCCTTTTGACTGGTGGGATAACAGGACAAATAAGAAGAACCCGAGGTATCCAGACTTCAAGCACAAACACACCGGTGAAGCATTGTGGGTTGATGGGAGGAACAATCCAAATTGGGTTATCTCCCAGTTGGCAATTCTGGACTCGAGAATGGGTTCTCTTCAAGGCAATGATAGGAAACCAGTTGCCTTTATGTATGCTGATGACTTCATGACACCTGACACCGACACTGAAGCCCATATGTGAAAGGAAACCTCCCATTCACCGATTTATCATAGCACTATGTATTAGATAGAAAATGTACTACTGCGATAGTGCACCTGCGCTCCTTCAATTTTGTTGTACATAGGTAGAATCGTGAAGTTTACCATAGAGGCGTGCGGCCATCTGTTGTAGTCAGTAGTAATGACAAATGCAGATGTAGTAAAGAATCGGATGGCCTTCCCTTAAATTTGCCTGAGAAAC                                                                                                                                   ]
[+] EMBL AK059181             [                CGCCCGAAAAATCTAGCCATGGTTCTCCTCGCCGCCGCCGCCGTCGGGCCACACAAAACCCTAAACCCTACCCTGAGCCCGCCGAGCTCCGGCGGCCGCCGCCCCCGCCTCCGCTTCCCGCTGCCCCTTCCGCGGGGCGGCCACCTCCGCTGCTCCGCGGGGTACCGCGAGGCGGCGGCGGCAGCGGCGTCGACGTCGTCGACGACGACGACGCCGCGGCCGACGGAGATCCCGTGGAGCAGGGAGCTCTGCAACTCCGTTCGGCTCATCGGGACGGTGGGCACCGAGGTGGAGCTGCGGCAGCTGCCCAGCGGCGGCTCCGTCGCGCGGGGGCGCCTCGCCATCTGGAAGTCGGCCACCGAGACCACATGGGTGACTCTAGCATTTTGGGATGACCTAGCGGTTGTGGCTTCTGAGCATGTGAAGAAGGGTGACCGAATATTTGTTTCTGGACGCCTTGTGTCGGACACTGTTGATGAGGGCCCTGAGAAACGACAGGTTTATTATAAGGTTGTGGTTCAACAGTTCAATTTCATTGAGTCCTTTCAGCAAGTGCAGTTATATGAGCCAGAGGCAGGCCTGGATACCTTAGGTGGAAAGCATGGAGATTATGTTGGTTCTACCTCTGGCTCGAGTGAGGGTAAAAGTAGGGACCATGTTGACTCATCCTCCCGTTCAACTGAACAGTTGTGGCAAGCCTTCTTTGCTAATCCTTTTGACTGGTGGGATAACAGGACAAATAAGAAGAACCCGAGGTATCCAGACTTCAAGCACAAACACACCGGTGAAGCATTGTGGGTTGATGGGAGGAACAATCCAAATTGGGTTATCTCCCAGTTGGCAATTCTGGACTCGAGAATGGGTTCTCTTCAAGGCAATGATAGGAAACCAGTTGCCTTTATGTATGCTGATGACTTCATGACACCTGACACCGACACTGAAGCCCATATGTGAAAGGAAACCTCCCATTCACCGATTTATCATAGCACTATGTATTAGATAGAAAATGTACTACTGCGATAGTGCACCTGCGCTCCTTCAATTTTGTTGTACATAGGTAGAATCGTGAAGTTTACCATAGAGGCGTGCGGCCATCTGTTGTAGTCAGTAGTAATGACAAATGCAGATGTAGTAAAGAATCGGATGGCCTTCCCTTAAATTTGCCTGAGAAACGGTGTACATCACTTGGTGTGTTTGCATCAGCTGAGCCTCAACTGACAAGTGACTTAATTACATTGGCATGCTCATTGGCTTAGATGGTGCAACAATGCAATCATCATCATATCTGCCATGAGTTGTGACCT]
[+] EMBL CA999391             [                                                                                                                                                                                                                                                                                                              AGGTGGAGCTGCGGCAGCTGCCCAGCGGCGGCTCCGTCGCGCGGGGGCGCCTCGCCATCTGGAAGTCGGCCACCGAGACCACATGGGTGACTCTAGCATTTTGGGATGACCTAGCGGTTGTGGCTTCTGAGCATGTGAAGAAGGGTGACCGAATATTTGTTTCTGGACGCCTTGTGTCGGACACTGTTGATGAGGGCCCTGAGAAACGACAGGTTTATTATAAGGTTGTGGTTCAACAGTTCAATTTCATTGAGTCCTTTCAGCAAGTGCAGTTATATGAGCCAGAGGCAGGCCTGGATACCTTAGGTGGAAAGCATGGAGATTATGTTGGTTCTACCTCTGGCTCGAGTGAGGGGTAAAGTAGGGACCATGTTGACTCATCCTCCCGTTCAACTGAACAGTTGTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AT003457             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GGTTCTACCTCTGGCTCGAGTGAGGGTAAAAGTAGGGACCATGTTGACTCATCCTCCCGTTCAACTGAACAGTTGTGGCAAGCCTTCTTTGCTAATCCTTTTGACTGGTGGGATAACAGGACAAATAAGAAGAACCCGAGGTATCCAGACTTCAAGCACAAACACACCGGTGAAGCATTGTGGGTTGATGGGAGGAACAATCCAAATTGGGTTATCTCCCAGTTGGCAATTCTGGACTCGAGAATGGGTTCTCTTCAAGGCAATGATAGGAAACCAGTTGCCTTTATGTATGCTGATGACTTCATGACACCTGACACCGACACTGAAGCCCATATGTGAAAGGAAACCTCCCATTCACCGATTTATCATAGCACTATGTATTAGATAGAAAATGTACTACTGCGATAGTGCACCTGCGCTCCTTCAATTTTGTTGTACATAGGTAGAATCGTGAAGTTTACCATAGAGGCGTGCGGCCATCTGTTGTAGTCAGTAGTAATGACAAATGCAGATGTAGTAAAGAATCGGATGGCCTTCCCTTAAAaaaaa                                                                                                                                            ]


>consensus_6754#0 AAGGGAGAAATCCAAACGCCCGAAAAATCTAGCCATGGTTCTCCTCGCCGCCGCCGCCGT CGGGCCACACAAAACCCTAAACCCTACCCTGAGCCCGCCGAGCTCCGGCGGCCGCCGCCC CCGCCTCCGCTTCCCGCTGCCCCTTCCGCGGGGCGGCCACCTCCGCTGCTCCGCGGGGTA CCGCGAGGCGGCGGCGGCAGCGGCGTCGACGTCGTCGACGACGACGACGCCGCGGCCGAC GGAGATCCCGTGGAGCAGGGAGCTCTGCAACTCCGTTCGGCTCATCGGGACGGTGGGCAC CGAGGTGGAGCTGCGGCAGCTGCCCAGCGGCGGCTCCGTCGCGCGGGGGCGCCTCGCCAT CTGGAAGTCGGCCACCGAGACCACATGGGTGACTCTAGCATTTTGGGATGACCTAGCGGT TGTGGCTTCTGAGCATGTGAAGAAGGGTGACCGAATATTTGTTTCTGGACGCCTTGTGTC GGACACTGTTGATGAGGGCCCTGAGAAACGACAGGTTTATTATAAGGTTGTGGTTCAACA GTTCAATTTCATTGAGTCCTTTCAGCAAGTGCAGTTATATGAGCCAGAGGCAGGCCTGGA TACCTTAGGTGGAAAGCATGGAGATTATGTTGGTTCTACCTCTGGCTCGAGTGAGGGTAA AAGTAGGGACCATGTTGACTCATCCTCCCGTTCAACTGAACAGTTGTGGCAAGCCTTCTT TGCTAATCCTTTTGACTGGTGGGATAACAGGACAAATAAGAAGAACCCGAGGTATCCAGA CTTCAAGCACAAACACACCGGTGAAGCATTGTGGGTTGATGGGAGGAACAATCCAAATTG GGTTATCTCCCAGTTGGCAATTCTGGACTCGAGAATGGGTTCTCTTCAAGGCAATGATAG GAAACCAGTTGCCTTTATGTATGCTGATGACTTCATGACACCTGACACCGACACTGAAGC CCATATGTGAAAGGAAACCTCCCATTCACCGATTTATCATAGCACTATGTATTAGATAGA AAATGTACTACTGCGATAGTGCACCTGCGCTCCTTCAATTTTGTTGTACATAGGTAGAAT CGTGAAGTTTACCATAGAGGCGTGCGGCCATCTGTTGTAGTCAGTAGTAATGACAAATGC AGATGTAGTAAAGAATCGGATGGCCTTCCCTTAAATTTGCCTGAGAAACGGTGTACATCA CTTGGTGTGTTTGCATCAGCTGAGCCTCAACTGACAAGTGACTTAATTACATTGGCATGC TCATTGGCTTAGATGGTGCAACAATGCAATCATCATCATATCTGCCATGAGTTGTGACCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)