cluster # 6758

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Oryza sativa
cluster # 6758 cluster # 6758 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6758#0 length = 591 sequences # 3

consensus_6758#1 length = 248 sequences # 1

consensusID : consensus_6758#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 591
fasta sequence

                              [TCTTGTAGCTTCCAGCAGCTAGCTTAGCTCTTAGCTCTTCCCTTCATCTTGGCTCTTCTTGTAGAAGTAGCAAGTTAGCAAGCCTCCTCCATTATGAGCTCATGGTCATGGAGCGTGAGACTTATGGTTCTCACTCTCACTCTCCTGGGAGCAGAGCTGGCAGGCATCCGCCATGGCCGCCGAATAATCCCGAGCTTAGAAGGGGACTCGCCGTCGCCGTCGCCGGCGAGTAAGGGCTGCGGCCTTTTGACGGAGGAGATGGCGGCGCCGCCCGGCCATTACTACAGCAGCAGGCGCATGATGCAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGCCCAAACCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCACTGCAGAAGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGACCGATGCAATTAATCAACGCAAGTTATAGCACTACTAGGTAGCTTATCTTGCTTGATTAATGGCAAGAACAAAGGATGTATGGTGCGGCGATCGCTTGCGAATTCAAAAAAA]

[+] EMBL AK062759             [TCTTGTAGCTTCCAGCAGCTAGCTTAGCTCTTAGCTCTTCCCTTCATCTTGGCTCTTCTTGTAGAAGTAGCAAGTTAGCAAGCCTCCTCCATTATGAGCTCATGGTCATGGAGCGTGAGACTTATGGTTCTCACTCTCACTCTCCTGGGAGCAGAGCTGGCAGGCATCCGCCATGGCCGCCGAATAATCCCGAGCTTAGAAGGGGACTCGCCGTCGCCGTCGCCGGCGAGTAAGGGCTGCGGCCTTTTGACGGAGGAGATGGCGGCGCCGCCCGGCCATTACTACAGCAGCAGGCGCATGATGCAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGCCCAAACCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCACTGCAGAAGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGACCGATGCAATTAATCAACGC                                                                                            ]
[+] EMBL OSC9451              [              GCAGCTAGCTTAGCTCTTAGCTCTTCCCTTCATCTTGGCTCTTCTTGTAGAAGTAGCAAGTNAGCAAGCNTCCTCCATTATGAGCTCATNGTCATGGAGCGNGAGACNTATGGTTCTCACTCTCACTCNCCTGGGAGCAGAGCTGTCAGGCATCCGCCATGGCCGCCGAATAATCCCGAGCTTAGAAGGGGACTCGCCGTCGNCGTGGCCGACGAGTAAGGGCTGCGGCCTTTTGACGGAGGAGATGGCGGCGCCGCCCGGCCATTACTACAGCAGNAGGCGCATGATGCAGGAGGAGGAGGAGGATC                                                                                                                                                                                                                                                                             ]
[+] EMBL AU174119             [                                                                                                                                                             TGGCAGGCATCCGCCATGGCCGCCGAATAATCCCGAGCTTAGAAGGGGACTCGCCGTCGCCGTCGCCGGCGAGTAAGGGCTGCGGCCTTTTGACGGAGGAGATGGCGGCGCCGCCCGGCCATTACTACAGCAGCAGGCGCATGATGCAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGCCCAAACCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCACTGCAGAAGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGACCGATGCAATTAATCAACGCAAGTTATAGCACTACTAGGTAGCTTATCTTGCTTGATTAATGGCAAGAACAAAGGATGTATGGTGCGGCGATCGCTTGCGAATTCAAAAAAA]




>consensus_6758#0
TCTTGTAGCTTCCAGCAGCTAGCTTAGCTCTTAGCTCTTCCCTTCATCTTGGCTCTTCTT
GTAGAAGTAGCAAGTTAGCAAGCCTCCTCCATTATGAGCTCATGGTCATGGAGCGTGAGA
CTTATGGTTCTCACTCTCACTCTCCTGGGAGCAGAGCTGGCAGGCATCCGCCATGGCCGC
CGAATAATCCCGAGCTTAGAAGGGGACTCGCCGTCGCCGTCGCCGGCGAGTAAGGGCTGC
GGCCTTTTGACGGAGGAGATGGCGGCGCCGCCCGGCCATTACTACAGCAGCAGGCGCATG
ATGCAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGC
CCAAACCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCACTGCAGA
AGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGAC
CGATGCAATTAATCAACGCAAGTTATAGCACTACTAGGTAGCTTATCTTGCTTGATTAAT
GGCAAGAACAAAGGATGTATGGTGCGGCGATCGCTTGCGAATTCAAAAAAA

consensusID : consensus_6758#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence

                              [CCAGAGGACGAGACAAGGGGGGAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGCCCAAGCCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCCCTGCAGAAGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGACCGATGCAATTAATCAACGCAAGTTATAGACCTAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760442             [CCAGAGGACGAGACAAGGGGGGAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGCCCAAGCCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCCCTGCAGAAGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGACCGATGCAATTAATCAACGCAAGTTATAGACCTAAAAAAAAAAAAAAAAAA]




>consensus_6758#1
CCAGAGGACGAGACAAGGGGGGAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAG
CGGGTGGTGCCGGAGGGCCCAAGCCCACTGCACAACTGATCGATCGATCGAGGTAGTGTT
TGTGTTTATCCCTGCAGAAGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGA
GCTTGTATTGTAATCGACCGATGCAATTAATCAACGCAAGTTATAGACCTAAAAAAAAAA
AAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6758#0      TCTTGTAGCTTCCAGCAGCTAGCTTAGCTCTTAGCTCTTCCCTTCATCTTGGCTCTTCTT 60
consensus_6758#1      ------------------------------------------------------------
                                                                                  

consensus_6758#0      GTAGAAGTAGCAAGTTAGCAAGCCTCCTCCATTATGAGCTCATGGTCATGGAGCGTGAGA 120
consensus_6758#1      ------------------------------------------------------------
                                                                                  

consensus_6758#0      CTTATGGTTCTCACTCTCACTCTCCTGGGAGCAGAGCTGGCAGGCATCCGCCATGGCCGC 180
consensus_6758#1      ------------------------------------------------------------
                                                                                  

consensus_6758#0      CGAATAATCCCGAGCTTAGAAGGGGACTCGCCGTCGCCGTCGCCGGCGAGTAAGGGCTGC 240
consensus_6758#1      ------------------------------------------------------------
                                                                                  

consensus_6758#0      GGCCTTTTGACGGAGGAGATGGCGGCGCCGCCCGGCCATTACTACAGCAGCAGGCGCATG 300
consensus_6758#1      -----------------------------------------CCAGAGGACGAGACA-AGG 18
                                                               * * ** *  ** *  * *

consensus_6758#0      ATGCAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGC 360
consensus_6758#1      GGGGAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGC 78
                        * ********************************************************

consensus_6758#0      CCAAACCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCACTGCAGA 420
consensus_6758#1      CCAAGCCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCCCTGCAGA 138
                      **** *********************************************** *******

consensus_6758#0      AGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGAC 480
consensus_6758#1      AGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGAC 198
                      ************************************************************

consensus_6758#0      CGATGCAATTAATCAACGCAAGTTATAGCACTACTAGGTAGCTTATCTTGCTTGATTAAT 540
consensus_6758#1      CGATGCAATTAATCAACGCAAGTTATAGACCTAAAAAAAAAAAAAAAAAA---------- 248
                      ****************************  ***  *   *    *               

consensus_6758#0      GGCAAGAACAAAGGATGTATGGTGCGGCGATCGCTTGCGAATTCAAAAAAA 591
consensus_6758#1      ---------------------------------------------------