These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 591 fasta sequence [TCTTGTAGCTTCCAGCAGCTAGCTTAGCTCTTAGCTCTTCCCTTCATCTTGGCTCTTCTTGTAGAAGTAGCAAGTTAGCAAGCCTCCTCCATTATGAGCTCATGGTCATGGAGCGTGAGACTTATGGTTCTCACTCTCACTCTCCTGGGAGCAGAGCTGGCAGGCATCCGCCATGGCCGCCGAATAATCCCGAGCTTAGAAGGGGACTCGCCGTCGCCGTCGCCGGCGAGTAAGGGCTGCGGCCTTTTGACGGAGGAGATGGCGGCGCCGCCCGGCCATTACTACAGCAGCAGGCGCATGATGCAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGCCCAAACCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCACTGCAGAAGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGACCGATGCAATTAATCAACGCAAGTTATAGCACTACTAGGTAGCTTATCTTGCTTGATTAATGGCAAGAACAAAGGATGTATGGTGCGGCGATCGCTTGCGAATTCAAAAAAA] [+] EMBL AK062759 [TCTTGTAGCTTCCAGCAGCTAGCTTAGCTCTTAGCTCTTCCCTTCATCTTGGCTCTTCTTGTAGAAGTAGCAAGTTAGCAAGCCTCCTCCATTATGAGCTCATGGTCATGGAGCGTGAGACTTATGGTTCTCACTCTCACTCTCCTGGGAGCAGAGCTGGCAGGCATCCGCCATGGCCGCCGAATAATCCCGAGCTTAGAAGGGGACTCGCCGTCGCCGTCGCCGGCGAGTAAGGGCTGCGGCCTTTTGACGGAGGAGATGGCGGCGCCGCCCGGCCATTACTACAGCAGCAGGCGCATGATGCAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGCCCAAACCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCACTGCAGAAGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGACCGATGCAATTAATCAACGC ] [+] EMBL OSC9451 [ GCAGCTAGCTTAGCTCTTAGCTCTTCCCTTCATCTTGGCTCTTCTTGTAGAAGTAGCAAGTNAGCAAGCNTCCTCCATTATGAGCTCATNGTCATGGAGCGNGAGACNTATGGTTCTCACTCTCACTCNCCTGGGAGCAGAGCTGTCAGGCATCCGCCATGGCCGCCGAATAATCCCGAGCTTAGAAGGGGACTCGCCGTCGNCGTGGCCGACGAGTAAGGGCTGCGGCCTTTTGACGGAGGAGATGGCGGCGCCGCCCGGCCATTACTACAGCAGNAGGCGCATGATGCAGGAGGAGGAGGAGGATC ] [+] EMBL AU174119 [ TGGCAGGCATCCGCCATGGCCGCCGAATAATCCCGAGCTTAGAAGGGGACTCGCCGTCGCCGTCGCCGGCGAGTAAGGGCTGCGGCCTTTTGACGGAGGAGATGGCGGCGCCGCCCGGCCATTACTACAGCAGCAGGCGCATGATGCAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGCCCAAACCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCACTGCAGAAGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGACCGATGCAATTAATCAACGCAAGTTATAGCACTACTAGGTAGCTTATCTTGCTTGATTAATGGCAAGAACAAAGGATGTATGGTGCGGCGATCGCTTGCGAATTCAAAAAAA] consensusID : consensus_6758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence [CCAGAGGACGAGACAAGGGGGGAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGCCCAAGCCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCCCTGCAGAAGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGACCGATGCAATTAATCAACGCAAGTTATAGACCTAAAAAAAAAAAAAAAAAA] [-] EMBL CA760442 [CCAGAGGACGAGACAAGGGGGGAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGCCCAAGCCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCCCTGCAGAAGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGACCGATGCAATTAATCAACGCAAGTTATAGACCTAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6758#0 TCTTGTAGCTTCCAGCAGCTAGCTTAGCTCTTAGCTCTTCCCTTCATCTTGGCTCTTCTT 60 consensus_6758#1 ------------------------------------------------------------ consensus_6758#0 GTAGAAGTAGCAAGTTAGCAAGCCTCCTCCATTATGAGCTCATGGTCATGGAGCGTGAGA 120 consensus_6758#1 ------------------------------------------------------------ consensus_6758#0 CTTATGGTTCTCACTCTCACTCTCCTGGGAGCAGAGCTGGCAGGCATCCGCCATGGCCGC 180 consensus_6758#1 ------------------------------------------------------------ consensus_6758#0 CGAATAATCCCGAGCTTAGAAGGGGACTCGCCGTCGCCGTCGCCGGCGAGTAAGGGCTGC 240 consensus_6758#1 ------------------------------------------------------------ consensus_6758#0 GGCCTTTTGACGGAGGAGATGGCGGCGCCGCCCGGCCATTACTACAGCAGCAGGCGCATG 300 consensus_6758#1 -----------------------------------------CCAGAGGACGAGACA-AGG 18 * * ** * ** * * * consensus_6758#0 ATGCAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGC 360 consensus_6758#1 GGGGAGGAGGAGGAGGAGGATCATGGTGTGTCTGCGTCCAAGCGGGTGGTGCCGGAGGGC 78 * ******************************************************** consensus_6758#0 CCAAACCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCACTGCAGA 420 consensus_6758#1 CCAAGCCCACTGCACAACTGATCGATCGATCGAGGTAGTGTTTGTGTTTATCCCTGCAGA 138 **** *********************************************** ******* consensus_6758#0 AGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGAC 480 consensus_6758#1 AGTGCAGAAACTGATCAATCAGCGGACGAGTATGTATAGCGAGCTTGTATTGTAATCGAC 198 ************************************************************ consensus_6758#0 CGATGCAATTAATCAACGCAAGTTATAGCACTACTAGGTAGCTTATCTTGCTTGATTAAT 540 consensus_6758#1 CGATGCAATTAATCAACGCAAGTTATAGACCTAAAAAAAAAAAAAAAAAA---------- 248 **************************** *** * * * consensus_6758#0 GGCAAGAACAAAGGATGTATGGTGCGGCGATCGCTTGCGAATTCAAAAAAA 591 consensus_6758#1 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||