cluster # 6763

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6763 cluster # 6763 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6763#0 length = 662 sequences # 3

consensus_6763#1 length = 134 sequences # 1

consensusID : consensus_6763#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 662
fasta sequence

                              [ATGGGACTAAGAGCAGAGATAGAATCAAGGGAGAAAGCAGGTCGTGAGGCTGCTGAAGCTAAGATGCGTATGGCAATGGCCGAACAAGCTCGAGCAGAGGCCCAAGCGCACTCGGAGATGATAGGCCATGGTCCTTTGAGGGCCCACGCTGCAGCGTCCCAAGGCGAAGATGGTCCTAGTCATGAGATGATGCAAGAGCAGGGTGAGGATGGATGGGGAAATGCTCAAAGGGACGATGAAGATCCATCTGAAGATTTCCTTAATGATGAAAATGAACCTGAGAACGGGAACTCTGATATGCAAGAGGACTGGCGCAGATCAGGAGAACTCGATCTGAACTCTAGGTAAGATTGGTGAGCTGGCTGAGATTGTGGGGG-AAAATAAGAA-CCATGAAAGTAGGTGAAGGCATGCGTTACATCTGCCAATAACTTTTATCTCTAGTTCAATACTTAACTGGTTGTATGATCCGAGGTTAAGTTAGCTGCCTTTGTGGCTGTAAGCTCGTGATTTTAAGCTACCTGTTAGCTGCCCTGTTGTTAAACAGCGTGCAGAATGTTGTGATAGCCTCTTTTGTTGCACTTCACTCTGTTTTTTTAATGCGTTGTTAGGAGGATGGTTTTAAAAAAAATTGGTATTTCTGGNTTTCTAGCTGGTGCTCTCCA]

[+] EMBL BQ908393             [ATGGGACTAAGAGCAGAGATAGAATCAAGGGAGAAAGCAGGTCGTGAGGCTGCTGAAGCTAAGATGCGTATGGCAATGGCCGAACAAGCTCGAGCAGAGGCCCAAGCGCACTCGGAGATGATAGGCCATGGTCCTTTGAGGGCCCACGCTGCAGCGTCCCAAGGCGAAGATGGTCCTAGTCATGAGATGATGCAAGAGCAGGGTGAGGATGGATGGGGAAATGCTCAAAGGGACGATGAAGATCCATCTGAAGATTTCCTTAATGATGAAAATGAACCTGAGAACGGGAACTCTGATATGC AGAGGACTGGCGCAGATCAGGAGAACTCGATCTGAACTCTAGGTAAGATTGGTGAGCTGGCTGAGATTGTGGGGG AAAATAAGAACCCATGAAAGTAGGTGAAGGCATGCGTTACATCTGCCAATAACTTTTATCTCTAGTTCAATACTTAACTGGTTGTATGATCCGAGGTTAAGTTAGCTGCCTTTGTGGCTGTAAGCTCGTGATTTTAAGCTACCTGTTAGCTGCCCTGTTGTTAAACAGCGTGCAGAATGTTGTGATAGCCTCTTTTGTTGCACTTCACTCTGTTTTTTTAATGCGTTGTTAGGAGGATGGTTTTAAAAAAAA                                  ]
[+] EMBL CB685398             [                   TAGACTCTAGGGAGAAAGCAGGTCGTGAGGCTGCTGAAGCTAAGATGCGTATGGCAATGGCTGAACAAGCTCGAGCGGAGGCCCAAGCGCACTCGGAGATGATAGGTCATGGCCCTTTGAGGGCCCATGCTGCAGCGTCCCAAGGCGAAGATGGCCCTAGTCATGAGATGATGCAAGAGCAAGGTGAAGATGGATGGGGAAATGCTCAAAGGGACGATGAAGATCCATCTGAAGATTTCCTTAATGATGAAAATGAACCTGAGAATGGGAACTCTGATATGCAAGAGGACTGGCGCAGATCAGGAGAACTCGATCTGAACTCTAGGTAAGATTGGTGAGCTGGCTGAGATTGTGGGGGAAAAATAAGAA CCATGAAAGTAGGTGAAGGCATGCGTTACATCTGCCAATAACTTTTATCTCTAGTTAAGTACTTAACTGGTTGTATGATCCGAGGTTAAGTTAGCTGCCTTTGTGGCTGTAAGCTCGTGATTTTAAGCTACCTGTTAGCTGCCCTGTTGTTAAACAGCGTGCAGAATGTTGTGATAGCCTCTTTT                                                                                          ]
[+] EMBL CA767517             [                                        GTCGTGAGGCTGCTGAAGCTAAGATGCGTATGGCAATGGCCGAACAAGCTCGAGCAGAGGCCCAAGCGCACTCGGAGATGATAGGCCATGGTCCTTTGAGGGCCCACGCTGCAGCGTCCCAAGGCGAAGATGGTCCTAGTCATGAGATGATGCAAGAGCAGGGTGAGGATGGATGGGGAAATGCTCAAAGGGACGATGAAGATCCATCTGAAGATTTCCTTAATGATGAAAATGAACCTGAGAACGGGAACTCTGATATGCAAGAGGACTGGCGCAGATCAGGAGAACTCGATCTGAACTCTAGGTAAGATTGGTGAGCTGGCTGAGATTGTGGGGG AAAATAAGAA CCATGAAAGTAGGTGAAGGCATGCGTTACATCTGCCAATAACTTTTATCTCTAGTTCAATACTTAACTGGTTGTATGATCCGAGGTTAAGTTAGCTGCCTTTGTGGCTGTAAGCTCGTGATTTTAAGCTACCTGTTAGCTGCCCTGTTGTTAAACAGCGTGCAGAATGTTGTGATAGCCTCTTTTGTTGCACTTCACTCTGTTTTTTTAATGCGTTGTTAGGAGGATGGTTTTATTCTTAGTTGGTATTTCTGGNTTTCTAGCTGGTGCTCTCCA]




>consensus_6763#0
ATGGGACTAAGAGCAGAGATAGAATCAAGGGAGAAAGCAGGTCGTGAGGCTGCTGAAGCT
AAGATGCGTATGGCAATGGCCGAACAAGCTCGAGCAGAGGCCCAAGCGCACTCGGAGATG
ATAGGCCATGGTCCTTTGAGGGCCCACGCTGCAGCGTCCCAAGGCGAAGATGGTCCTAGT
CATGAGATGATGCAAGAGCAGGGTGAGGATGGATGGGGAAATGCTCAAAGGGACGATGAA
GATCCATCTGAAGATTTCCTTAATGATGAAAATGAACCTGAGAACGGGAACTCTGATATG
CAAGAGGACTGGCGCAGATCAGGAGAACTCGATCTGAACTCTAGGTAAGATTGGTGAGCT
GGCTGAGATTGTGGGGGAAAATAAGAACCATGAAAGTAGGTGAAGGCATGCGTTACATCT
GCCAATAACTTTTATCTCTAGTTCAATACTTAACTGGTTGTATGATCCGAGGTTAAGTTA
GCTGCCTTTGTGGCTGTAAGCTCGTGATTTTAAGCTACCTGTTAGCTGCCCTGTTGTTAA
ACAGCGTGCAGAATGTTGTGATAGCCTCTTTTGTTGCACTTCACTCTGTTTTTTTAATGC
GTTGTTAGGAGGATGGTTTTAAAAAAAATTGGTATTTCTGGNTTTCTAGCTGGTGCTCTC
CA

consensusID : consensus_6763#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 134
fasta sequence

                              [GTTAGCTGCCCTGTTGTTAAACAGCGTGCAGAATGTTGTGATAGCCTCTTTTGTTTCNCTTCACTCTGTTTTTTTAAGATGCGTTGTTAGGATGTTGGTTTTATTCTTAGTTACTTCTGATTTTCTAAAAAAAA]

[+] EMBL AT003532             [GTTAGCTGCCCTGTTGTTAAACAGCGTGCAGAATGTTGTGATAGCCTCTTTTGTTTCNCTTCACTCTGTTTTTTTAAGATGCGTTGTTAGGATGTTGGTTTTATTCTTAGTTACTTCTGATTTTCTAAAAAAAA]




>consensus_6763#1
GTTAGCTGCCCTGTTGTTAAACAGCGTGCAGAATGTTGTGATAGCCTCTTTTGTTTCNCT
TCACTCTGTTTTTTTAAGATGCGTTGTTAGGATGTTGGTTTTATTCTTAGTTACTTCTGA
TTTTCTAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6763#0      ATGGGACTAAGAGCAGAGATAGAATCAAGGGAGAAAGCAGGTCGTGAGGCTGCTGAAGCT 60
consensus_6763#1      ------------------------------------------------------------
                                                                                  

consensus_6763#0      AAGATGCGTATGGCAATGGCCGAACAAGCTCGAGCAGAGGCCCAAGCGCACTCGGAGATG 120
consensus_6763#1      ------------------------------------------------------------
                                                                                  

consensus_6763#0      ATAGGCCATGGTCCTTTGAGGGCCCACGCTGCAGCGTCCCAAGGCGAAGATGGTCCTAGT 180
consensus_6763#1      ------------------------------------------------------------
                                                                                  

consensus_6763#0      CATGAGATGATGCAAGAGCAGGGTGAGGATGGATGGGGAAATGCTCAAAGGGACGATGAA 240
consensus_6763#1      ------------------------------------------------------------
                                                                                  

consensus_6763#0      GATCCATCTGAAGATTTCCTTAATGATGAAAATGAACCTGAGAACGGGAACTCTGATATG 300
consensus_6763#1      ------------------------------------------------------------
                                                                                  

consensus_6763#0      CAAGAGGACTGGCGCAGATCAGGAGAACTCGATCTGAACTCTAGGTAAGATTGGTGAGCT 360
consensus_6763#1      ------------------------------------------------------------
                                                                                  

consensus_6763#0      GGCTGAGATTGTGGGGGAAAATAAGAACCATGAAAGTAGGTGAAGGCATGCGTTACATCT 420
consensus_6763#1      ------------------------------------------------------------
                                                                                  

consensus_6763#0      GCCAATAACTTTTATCTCTAGTTCAATACTTAACTGGTTGTATGATCCGAGGTTAAGTTA 480
consensus_6763#1      ------------------------------------------------------------
                                                                                  

consensus_6763#0      GCTGCCTTTGTGGCTGTAAGCTCGTGATTTTAAGCTACCTGTTAGCTGCCCTGTTGTTAA 540
consensus_6763#1      ----------------------------------------GTTAGCTGCCCTGTTGTTAA 20
                                                              ********************

consensus_6763#0      ACAGCGTGCAGAATGTTGTGATAGCCTCTTTTGTTGCACTTCACTCTGTTTTTTTAA--T 598
consensus_6763#1      ACAGCGTGCAGAATGTTGTGATAGCCTCTTTTGTTTCNCTTCACTCTGTTTTTTTAAGAT 80
                      *********************************** * *******************  *

consensus_6763#0      GCGTTGTTAGGAGGATGGTTTTAAAAAAAATTGGTATTTCTGGNTTTCTAGCTGGTGCTC 658
consensus_6763#1      GCGTTGTTAGGATGTTGGTTTTATTCTTAGTT---ACTTCTGATTTTCTAAAAAAAA--- 134
                      ************ * ********     * **   * *****  ******          

consensus_6763#0      TCCA 662
consensus_6763#1      ----