These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6764#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 528 fasta sequence [TGGTGGNGGCGAAAAGCGGACAAACACTCCAAATCGGGACTTGGCAGGCCGCCCAGTGGAACATGTGGTCACAGCTCCTGGAGGGCAGGTTTCTGCAAAAGTATGCCGAAGTCAGCACGTCCGAGACCCCAACAGGCGAAGACAGTGGAGGGACCCCCGCGGAACGTGCCGTGGCCGAGTCAGATCGCCTACTGTGCACGTTACCCTACCTACCCGCTATTTTCATCCGCGGCCACTCATGGCATCTAGCTGCAACCTCCCGGCAAGGCGATAAAACTATACTTTGGCATGAATACGCCTTTGGGACGACCCAGAGCGTTGTGGGCACATATAAAATCATAAGTGGATTGCAAAGCCTGCAGCGATATATTCGCGACGTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAACACTGACCGCGCTGCTGGGAAGGATTTATTTTTGGGCAGCGCGTGTTTCCTAGCATAGTGTGGTTCCGATTAAGATCCCCGAAGTTTTACTAAGTTGCAAGCAAAAAAA] [+] EMBL AT003730 [TGGTGGNGGCGAAAAGCGGACAAACACTCCAAATCGGGACTTGGCAGGCCGCCCAGTGGAACATGTGGTCACAGCTCCTGGAGGGCAGGTTTCTGCAAAAGTATGCCGAAGTCAGCACGTCCGAGACCCCAACAGGCGAAGACAGTGGAGGGACCCCCGCGGAACGTGCCGTGGCCGAGTCAGATCGCCTACTGTGCACGTTACCCTACCTACCCGCTATTTTCATCCGCGGCCACTCATGGCATCTAGCTGCAACCTCCCGGCAAGGCGATAAAACTATACTTTGGCATGAATACGCCTTTGGGACGACCCAGAGCGTTGTGGGCACATATAAAATCATAAGTGGATTGCAAAGCCTGCAGCGATATATTCGCGACGTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAACACTGACCGCGCTGCTGGGAAGGATTTATTTTTGGGCAGCGCGTGTTTCCTAGCATAGTGTGGTTCCGATTAAGATCCCCGAAGTTTTACTAAGTTGCAAGCAAAAAAA] [+] EMBL AT003695 [ ATCGGGACTTGGCAGGCCGCCCAGTGGAACATGTGGTCACAGCTCCTGGAGGGCAGGTTTCTGCAAAAGTATGCCGAAGTCAGCACGTCCGAGACCCCAACAGGCGAAGACAGTGGAGGGACCCCCGCGGAACGTGCCGTGGCCGAGTCAGATCGCCTACTGTGCACGTTACCCTACCTACCCGCTATTTTCATCCGCGGCCACTCATGGCATCTAGCTGCAACCTCCCGGCAAGGCGATAAAACTATACTTTGGCATGAATACGCCTTTGGGACGACCCAGAGCGTTGTGGGCACATATAAAATCATAAGTGGATTGCAAAGCCTGCAGCGATATATTCGCGACGTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAACACTGACCGCGCTGCTGGGAAGGATTTATTTTTGGGCAGCGCGTGTTTCCTAGCATAGTGTGGTTCCGATTAAGATCCCCGAAGTTTTACTAAGTTGCAAGCAAAAAAA] [+] EMBL AT003711 [ TCCAAGACCCCAGCAGGCAAAGNCAGTGGAGGGACCCCCGCGGAACGTGCCGT GCCGAGTCAGATCGCCTACTGTGCACGTTACCCTACCTACCCGCTATTTTCATCCGCGGCCACTCATGGCATCTAGCTGCAACCTCCCGGCAAGGCGATAAAACTATACTTTGGCATGAATACGCCTTTGGGACGACCCAGAGCGTTGTGGGCACATATAAAATCATAAGTGGATTGCAAAGCCTGCAGCGATATATTCGCGACGTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAACACTGACCGCGCTGCTGGGAAGGATTTATTTTTGGGCAGCGCGTGTTTCCTAGCATAGTGTGGTTCCGATTAAGATCCCCGAAGTTTTACTAAGTTGCAAGCAAAAAAA] consensusID : consensus_6764#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence [GCAAANACNNTGGGNGGGNCCCCCCGGAACGNNCCNGGGCCAAANCNAATCACCNTCTGGGNCCNTTTCCCNCCCNANCCGNTATTTTTATTCCGCGNCCCCTCATGGCATCTANCTGCACCCTCCCGGCAAGNNGATAAAACTATNCTTTGGCATGAATNCGCCTTTGGGACGAACCCAGAGCGTTGTGGGCACATATAAAATCATAANTGGATTGCAAAGCCTGCAGCGATATATTCGCGACNTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAACACTGACCNCGCTGNTGGGAAGGATTTATTTTTGGNCAGCGCGTGTTTCCTAGCATAGTGTGGTTCCGATTAAGATCCCCGAAGTTTTACTCAGTTGCAAGCAAAAAA] [+] EMBL AT003627 [GCAAANACNNTGGGNGGGNCCCCCCGGAACGNNCCNGGGCCAAANCNAATCACCNTCTGGGNCCNTTTCCCNCCCNANCCGNTATTTTTATTCCGCGNCCCCTCATGGCATCTANCTGCACCCTCCCGGCAAGNNGATAAAACTATNCTTTGGCATGAATNCGCCTTTGGGACGAACCCAGAGCGTTGTGGGCACATATAAAATCATAANTGGATTGCAAAGCCTGCAGCGATATATTCGCGACNTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGAACACTGACCNCGCTGNTGGGAAGGATTTATTTTTGGNCAGCGCGTGTTTCCTAGCATAGTGTGGTTCCGATTAAGATCCCCGAAGTTTTACTCAGTTGCAAGCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6764#0 TGGTGGNGGCGAAAAGCGGACAAACACTCCAAATCGGGACTTGGCAGGCCGCCCAGTGGA 60 consensus_6764#1 ------------------------------------------------------------ consensus_6764#0 ACATGTGGTCACAGCTCCTGGAGGGCAGGTTTCTGCAAAAGTATGCCGAAGTCAGCACGT 120 consensus_6764#1 ------------------------------------------------------------ consensus_6764#0 CCGAGACCCCAACAGGCGAAGACAGTGGAGGGACCCCCGCGGAACGTGCCGTGGCCGAGT 180 consensus_6764#1 ---------------GCAAANACNNTGGGNGGGNCCCCCCGGAACGNNCCNGGGCCAAAN 45 ** ** ** *** ** **** ******* ** **** * consensus_6764#0 CAGATCGCCTACTGTGCACGTTACCCTACCTACCCGCTATTTTCAT-CCGCGGCCACTCA 239 consensus_6764#1 CNAATCACCNTCTGGGNCCNTTTCCCNCCCNANCCGNTATTTTTATTCCGCGNCCCCTCA 105 * *** ** *** * * ** *** ** * *** ****** ** ***** ** **** consensus_6764#0 TGGCATCTAGCTGCAACCTCCCGGCAAGGCGATAAAACTATACTTTGGCATGAATACGCC 299 consensus_6764#1 TGGCATCTANCTGCACCCTCCCGGCAAGNNGATAAAACTATNCTTTGGCATGAATNCGCC 165 ********* ***** ************ *********** ************* **** consensus_6764#0 TTTGGGACGA-CCCAGAGCGTTGTGGGCACATATAAAATCATAAGTGGATTGCAAAGCCT 358 consensus_6764#1 TTTGGGACGAACCCAGAGCGTTGTGGGCACATATAAAATCATAANTGGATTGCAAAGCCT 225 ********** ********************************* *************** consensus_6764#0 GCAGCGATATATTCGCGACGTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGA 418 consensus_6764#1 GCAGCGATATATTCGCGACNTCTTTTGGCCGTGGTACCTTCGAGTTATTCTGGAAATCGA 285 ******************* **************************************** consensus_6764#0 ACACTGACCGCGCTGCTGGGAAGGATTTATTTTTGGGCAGCGCGTGTTTCCTAGCATAGT 478 consensus_6764#1 ACACTGACCNCGCTGNTGGGAAGGATTTATTTTTGGNCAGCGCGTGTTTCCTAGCATAGT 345 ********* ***** ******************** *********************** consensus_6764#0 GTGGTTCCGATTAAGATCCCCGAAGTTTTACTAAGTTGCAAGCAAAAAAA 528 consensus_6764#1 GTGGTTCCGATTAAGATCCCCGAAGTTTTACTCAGTTGCAAGCAAAAAA- 394 ******************************** **************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||